Cyprinodon variegatus (sheepshead minnow): 107096430
Help
Entry
107096430 CDS
T06110
Name
(RefSeq) polyadenylate-binding protein 4-like isoform X1
KO
K13126
polyadenylate-binding protein
Organism
cvg
Cyprinodon variegatus (sheepshead minnow)
Pathway
cvg03015
mRNA surveillance pathway
cvg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cvg00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
107096430
09123 Folding, sorting and degradation
03018 RNA degradation
107096430
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cvg03019
]
107096430
03041 Spliceosome [BR:
cvg03041
]
107096430
Messenger RNA biogenesis [BR:
cvg03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
107096430
mRNA cycle factors
Stress granule specific factors
107096430
Spliceosome [BR:
cvg03041
]
Complex C
Other components
Complex C specific factors
107096430
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_occluded
RBD_DEAH11
RRM_5
RRM_7
RRM_10
RBD_RDR6
RRM_3
OB_RNB
POP1_C
ApbA_C
Motif
Other DBs
NCBI-GeneID:
107096430
NCBI-ProteinID:
XP_015248563
Ensembl:
ENSCVAG00000019246
LinkDB
All DBs
Position
Unknown
AA seq
625 aa
AA seq
DB search
MNTATGSYPMASLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFS
QPADAERALDTMNFDVVKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFS
AFGNILSCKVVCDENGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKERE
AELGAKAKEFTNVYIKNFGDDMDDERLKELFEKYGKTLSVKVMADSSGKSRGFGFVSFEK
HEDANKAVEEMNGTELNGKTVFVGRAQKKMERQAELKRKFEQLKQERISRYQGVNLYIKN
LDDTIDDEKLRKEFSPFGSITSAKVMLEEGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS
KPLYVALAQRKEERKAHLTNQYMQRIAGMRAMPANAIINQFQPTSGYFMPAVPQAQNRTT
YYAPNQLAQMRPNPRWQQQGGRGQGGFQGMGNSLRQPGPRANLRHMTPSSGAQGPRGAGQ
TMGPRQSMGVPGPRAMPPYKYATSVRNPNPQVVQPIALQQAQPAVHVQGQEPLTASMLAA
APPQEQKQMLGERLFPLIQAMHANLAGKITGMLLEIDNSELLHMLESHESLRSKVEEAVA
VLQAHQAKKDATQKVGGMATTAATS
NT seq
1878 nt
NT seq
+upstream
nt +downstream
nt
atgaacactgcgacagggagttatccgatggcttctctctacgttggcgacctgcacccc
gacatcacggaggctatgctgtatgagaagttcagccccgccggaccggtgctctccatc
cgggtctgcagggacatgatcacccgccgctccctgggatacgcttatgtcaacttctct
cagcccgctgacgctgagagagccctggacaccatgaactttgacgtggtgaaagggaag
ccgatcaggatcatgtggtcgcagagagacccatccctcaggaagtctggcgtgggaaac
gtcttcatcaagaaccttgacaagtccatcgacaacaaagctctgtacgacaccttctcc
gcttttggcaacatcctctcctgtaaggtggtgtgtgatgaaaatggttccaagggctac
gcatttgtccactttgagacgcaggatgcagcggatcgagccattgagaagatgaacggc
atgcttctgaatgaccgcaaggtgtttgttggtcgtttcaaatctcgaaaagaacgggag
gcagaactcggtgctaaagctaaggagttcaccaatgtttacatcaagaactttggcgac
gacatggacgatgaacggctaaaggaactcttcgaaaaatacggaaaaacactgagtgtg
aaggtgatggcagactcctcgggcaaatccagagggtttgggtttgtgagcttcgagaaa
catgaggatgccaacaaggcagtggaggaaatgaacggcaccgagctcaacggtaagacc
gttttcgtgggccgagctcagaagaagatggagcggcaggcggagctgaagaggaagttt
gagcagctcaaacaagaacgaatcagtcggtatcagggtgttaacctttacatcaagaac
cttgacgatacaatcgatgatgaaaagttgcgtaaagagttttctccatttggttccatt
acaagtgctaaggtgatgttagaagaaggccgctcaaagggctttggcttcgtttgcttc
tcttcccctgaagaggccaccaaggccgtgacagagatgaacggacgcattgttggctcc
aaacctttgtacgttgctctcgcccagcgcaaagaggagcgtaaagctcacctcaccaac
cagtacatgcagcgtatagctggcatgagggccatgccggctaacgccatcatcaatcag
ttccagcccaccagtggctacttcatgcctgctgtcccacaggctcagaatagaaccaca
tactatgcaccgaaccagctggctcagatgcgacccaaccccaggtggcagcagcaaggt
ggaagaggccaaggcggtttccaaggaatgggcaactcgctgcgtcagcctggaccccgg
gccaacctgagacacatgactcctagcagcggtgcacagggcccacgaggtgccggtcag
accatgggtccacgtcagtcaatgggagtccctggtcctagggccatgccgccctataaa
tatgccaccagtgtccgtaaccccaatccccaagtggtgcaacctattgccttacaacag
gctcaaccagctgtacatgttcagggccaggagccgcttacagcctccatgctagctgct
gccccccctcaggagcagaaacagatgttaggagagcgtctgttcccgctgattcaggcc
atgcacgccaacctggcgggaaaaatcaccggcatgctgctggaaattgacaactcagag
ctgctgcatatgttggagtcgcatgaatctctccgttcaaaggtggaggaagcagttgcc
gttctgcaggcccaccaagcaaaaaaagatgccacccagaaagtaggtggcatggcaact
actgctgctacatcctaa
DBGET
integrated database retrieval system
