Cyprinodon variegatus (sheepshead minnow): 107096494
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Entry
107096494 CDS
T06110
Symbol
col4a2
Name
(RefSeq) collagen alpha-2(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
cvg
Cyprinodon variegatus (sheepshead minnow)
Pathway
cvg04382
Cornified envelope formation
cvg04510
Focal adhesion
cvg04512
ECM-receptor interaction
cvg04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
cvg00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
107096494 (col4a2)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
107096494 (col4a2)
09142 Cell motility
04820 Cytoskeleton in muscle cells
107096494 (col4a2)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
107096494 (col4a2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
cvg04147
]
107096494 (col4a2)
00536 Glycosaminoglycan binding proteins [BR:
cvg00536
]
107096494 (col4a2)
Exosome [BR:
cvg04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
107096494 (col4a2)
Glycosaminoglycan binding proteins [BR:
cvg00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
107096494 (col4a2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
107096494
NCBI-ProteinID:
XP_015248645
LinkDB
All DBs
Position
Unknown
AA seq
1664 aa
AA seq
DB search
MQRQHRGGTNLRLLLLCLYIAIIASGAQAGGKKHSGPCGGRDCSGGCKCFPEKGARGLPG
PLGPQGPQGPLGRPGDPGIQGQKGQKGDQGIGGIIGPKGGMGMTGVPGFSGNDGIPGHPG
QPGSRGKPGADGCNGTKGEPGFSGLPGYLGPPGNPGLYGKKGEKGDSLDVNVYMLRFRGD
PGTPGENGWPGLQGRPGSSGNRGPQGPKGPPGPPGVRGPKGTMTKVLKGIKGEAGEIGLP
GPPGNFTEQYRLPPPVPPQFRGDKGESGDLADNHDNKGESGITGFPGPRGESGADGPPGL
RGEPGDPGLNGVDGPKGVRGDPGELITSGGTALPGLPGYPGEEGPQGEKGPTGDPGYPGP
PGPPASSTQQAFVSFGPFGFKGERGDKGLPGDPGRPAVSPGSPGPDGRPGSRGPPGIKRS
MKEFFKGDKGFRGQPGNGGFKGIKGDHGECKCSGDNFPRGLAGPPGEPGDAGMTGEFGYD
GDIGDPGPRGADGLPGPAGINGFQGPKGRKGETGVARQKGYPGDPGDPGNDGIQGIPGAP
GPNGLNGFPGNRGLPGEGPIGERGDKGFPGWPGTAGPLGEIGKPGENFAGIKGLRGPSGD
EGLPGYDGIPGPPGSPGGCIPDGDGGQVDVTGACEPIPGPPGLPGPRGFSGISGSPGDRG
PKGVKGASGVKGEKGEQGDRGTSGFPGPQGFVGPRGEPGIPGTRGSEGTPGSPGIPGRDG
FQGDKGAHGEIMDASPGPPGDPGIPGLQGKKGQTGEPGPPGFAGINGMPGMIGFRGPKGA
PGLPGEEGRPGPAGTYGYPGDPGQSGPPGPTGAIGETGITGERGPDGDPGPPGPIGLKGM
PGAYGDDGTVGEQGPQGDPGQQGATGRPGIQGKKGEKGSPGTSGFGGVGGNPGLKGFEGQ
KGGAGVPGEPGLKGQTGKKGEKGESGLTGPRGIMSPKMLVDIKGVKGDHGHQGDPGFTGP
RGAKGVQGWPGLDGAHGLPGDPSTEKGVSGDPGAQGLPGVKGMPGSPGNRGIQGFDGMHG
NKGGKGSPGAYGQSGLKGRKGAKGDKGIRIDLPGSKGLRGEDGFDGEPGVKGILGPIGDI
GITGFDGVQGVKGQSGDPGIVGYQGLDGDRGTPGNQGQKGFPGIPGKDGLPGVPGFSGIK
GYPGLKGLFGLDGLKGQQGVKGTPGLTVYGPIGETGIKGNKGESGLPNSEPGAPGPAGLK
GYQGPPGDFGQPGEPGLRGLKGPDGSPNIPGKRGDPGLPGGPGLQGYPGARGQPGLDAFP
GEKGLQGDYGFPGSPGWKGYQGDPGPAGYKGADGVFGKKGPKGDQGYMGFPGQIGLKGER
GPTGPKGDTGIPGYPGAAGNRGPAPPSIRIPGERGPPGPRGIQGPKGSTGEPGPRGPPGD
PGFMGPIGDKGMPGISGTPGVPGFRGDVGEVGHHGLQGTEGQRGRPGIPGLPGMAGRSIS
VGYLLVKHSQSEQTPMCPVGMSKLWDGYSLLYLEGQEKAHNQDLGLAGSCLPRFSTMPFL
YCNPGDLCYYASRNDKSFWLSTTAPLPMMPVEEGEIKPYISRCSVCEAPSVAIAVHSQDI
TIPQCPVGWRSLWIGYSFLMHTAAGNEGGGQSLSSPGSCLEDFRTTPFIECNGAKGTCHY
FANKHSFWLTSIDQSFHSQPSAETLKAGQLLSRISRCQVCMKNL
NT seq
4995 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaggcagcacagagggggaacaaacctgaggctgctgcttctttgcctttacatc
gccatcatcgcctctggagcgcaagctggtggaaagaagcacagtggtccatgtggggga
agagactgcagcggaggttgtaaatgctttccagaaaagggtgccaggggtctcccaggg
cctcttggtcctcagggcccacaaggacccctagggcgaccaggggatcctggtattcaa
ggacaaaaggggcagaaaggtgaccaaggaattggtggcatcataggtccaaaaggcggc
atgggaatgactggtgttcctgggttctctggaaacgatggaattcctggacacccagga
caacctggatccagagggaagccaggagcagacggctgtaacgggaccaaaggagaacca
gggttctcaggactaccgggttatttggggccccctggaaatcctggactatatggcaag
aagggagagaagggggattctctggatgtcaacgtttacatgctgcgcttcaggggagac
ccagggacacctggagaaaacggatggccggggcttcaaggaagaccagggtcctcaggt
aacagaggccctcaaggacccaagggtcctccgggtcctccaggggtccgtggaccgaag
ggtaccatgaccaaagtgttgaagggaatcaaaggagaagcaggagagatcggactacca
ggcccaccaggaaacttcactgaacagtatcgtctgcctccccctgtaccacctcaattc
agaggggacaagggagaaagtggagatctggcagacaaccatgacaacaaaggagaaagt
ggtataacgggattccctgggccccggggtgaaagtggtgcagatgggcctcctgggctg
aggggtgagcctggagatccagggctaaacggagtagatggtcctaagggagtcagaggt
gatccaggagagttgattacttcaggaggtactgcgcttcctggtcttcctggataccct
ggtgaggaggggccacaaggagagaagggtccaactggagatccaggctaccccggacct
cccggaccccctgcctctagcacacagcaagctttcgtttcctttggcccttttggtttt
aagggggaacgaggagataagggtctaccaggagacccaggaagacctgctgtctctcca
ggatctcctggaccggatggaaggccagggagcagaggccctcctggaatcaaaagatca
atgaaagagtttttcaaaggagataaaggattcaggggacaacctggcaatggaggattc
aaaggaataaaaggagatcatggagaatgcaagtgcagtggtgataatttcccccgtggt
ttagctggtcctcccggtgagcctggtgatgctgggatgactggggagtttgggtatgat
ggggatataggagacccaggtccccgaggagcagatggtttacctggacctgctggcatt
aatggtttccaggggcccaaaggtcgaaaaggagaaacaggtgttgcaagacaaaaagga
tatccaggggacccaggagacccagggaatgatggaattcaagggatacccggtgctcct
ggcccaaacggccttaatggtttccctggtaaccgcggccttccaggtgaaggtcctata
ggagaacgtggagacaaagggttccctggatggcccggtacggctggtcctttaggagag
ataggaaaaccaggtgaaaactttgcaggtatcaaaggactgcgtggtccttctggagat
gaaggcctccctggctatgatggaattcctggtccgcctggaagtcccggcggctgtata
ccagatggagatggaggacaggtggatgtgacaggtgcttgtgaacccatcccaggtcct
cctggcctgcctggacctcgtggatttagtggaatatcaggttctccaggggatcgtggc
cctaaaggtgtaaaaggtgcaagtggagtgaagggagagaaaggagaacaaggggaccgg
ggaacaagcggctttcctggaccacaaggttttgtcggtccccgaggagaacctgggatt
cctggcaccaggggttcagaaggtacccctggtagccctggtattcctggccgagacggg
tttcagggtgataagggtgcccatggagaaataatggatgcatcacctggacctccaggt
gacccaggaatacctggcttgcaaggaaaaaaaggccaaacaggagaaccgggaccacca
ggttttgcaggaataaatggaatgcctggaatgattggcttcagggggcccaaaggtgcc
ccaggcctgcctggggaagagggaagacctgggccagctggcacatatggctaccctggt
gatcctggtcagtctggtccacctggtccgactggcgctattggagagacaggaataacc
ggagagagaggtccagatggagacccaggtcctccaggtccaatagggttaaaaggaatg
ccaggtgcttatggagatgatggcaccgttggagagcagggcccacaaggtgaccctgga
caacaaggtgcaactggaagaccgggaattcaaggaaagaaaggagagaaaggttctcct
ggaacgtctgggtttgggggtgtcggtggaaatcctggtctgaagggctttgaggggcaa
aaaggaggggcgggggtgcctggtgagcctggcctgaaaggtcagacgggaaaaaaggga
gagaaaggtgagtccggtctgaccggtccacgggggattatgtcccccaaaatgcttgtt
gacataaagggagtcaaaggagatcacgggcatcaaggcgatccaggttttaccgggcca
agaggtgccaaaggtgtacaaggttggccaggccttgatggagctcacggtctgccagga
gaccccagtactgaaaaaggtgtttctggagatccaggtgcacagggcctgccaggggta
aaaggaatgccagggtcacctggtaaccgaggcattcaaggctttgatggaatgcatggt
aacaagggaggcaaaggaagccccggtgcctacggtcagtcgggattgaaaggaaggaag
ggggccaaaggcgataaaggcattcgtatagaccttccaggatctaaaggactgagagga
gaggatggatttgatggagaaccaggtgtgaaaggaatactgggaccaattggggacatt
ggtataactggttttgatggtgtccaaggagtaaagggacaatctggagatccgggaata
gtgggttaccaagggttggacggggacaggggaactccaggaaaccagggtcaaaagggt
tttcctggtattccagggaaagatggtctgccaggcgttcctggcttctctggaattaaa
ggttaccccggccttaagggtctttttggattagatggactgaaaggacaacagggtgtc
aaaggaacaccaggtctgactgtttatggacccattggagagacaggaattaaagggaat
aaaggagaaagtggtttacccaatagcgagccaggtgctccaggtccagctggtttgaaa
ggctaccaggggcctccgggtgactttggtcaacctggagaaccaggactccgtggcctt
aaaggaccagatgggagcccaaacattcctggaaaaaggggggatcctggccttccagga
ggtcctggattgcaaggttatccaggagcaaggggacagcctggtttggatgcttttcca
ggagagaaaggtttacaaggagactatgggttccctggttcacctggttggaaaggatat
caaggagatccaggtccagcgggctacaagggggctgatggcgtctttgggaagaaagga
ccaaaaggagaccaaggttacatgggatttcctggacagataggtttaaaaggagagaga
ggaccaactggtccaaaaggagacactggaattccaggttatcctggggcagctggcaac
cggggtcctgctccaccttccattcgaattccaggagaaagaggtcctccgggaccacgg
ggtatccaaggcccgaaaggatctacaggggagccaggacctcgaggcccacctggagat
ccagggttcatgggaccaattggagataaaggtatgcctgggattagtggcactccagga
gtcccgggtttccgtggagacgttggagaagttggacaccatggtctccaaggaacggaa
ggtcaaagaggcaggccaggtatcccggggttacctgggatggctggccgcagcatcagc
gtgggctacttgcttgtgaaacacagtcagtcagagcagacgccgatgtgtccggtggga
atgtctaaactctgggacggttacagtctgctgtacctggagggtcaggagaaggcccac
aaccaggacctgggtttggctggttcctgcctcccacggttcagcaccatgcccttcctc
tactgtaaccctggagacctttgttactatgccagtaggaatgataagtccttctggttg
tcaaccactgctccccttcccatgatgcctgtagaggaaggagaaattaagccatacatc
agccgttgctccgtttgtgaggctccatcagtcgctattgcggttcatagccaagacatc
accattccacagtgtcccgtgggctggaggagcctgtggattggctactctttcctcatg
cacacagcagcaggaaacgaaggcggcggccagtccctgtcgtcgcctgggtcctgcctg
gaggacttccgcacaacaccgtttatcgagtgtaatggggccaagggcacatgccactac
ttcgctaacaaacacagcttctggctgacatctatagaccagtctttccacagccagccg
tccgcggagacattaaaagcaggccagctcctttcacgcatcagccgctgccaggtctgc
atgaagaacctgtga
DBGET
integrated database retrieval system
