Cyprinodon variegatus (sheepshead minnow): 107096494
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Entry
107096494 CDS
T06110
Symbol
col4a2
Name
(RefSeq) collagen alpha-2(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
cvg
Cyprinodon variegatus (sheepshead minnow)
Pathway
cvg04510
Focal adhesion
cvg04512
ECM-receptor interaction
cvg04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
cvg00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
107096494 (col4a2)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
107096494 (col4a2)
09142 Cell motility
04820 Cytoskeleton in muscle cells
107096494 (col4a2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
cvg04147
]
107096494 (col4a2)
00536 Glycosaminoglycan binding proteins [BR:
cvg00536
]
107096494 (col4a2)
Exosome [BR:
cvg04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
107096494 (col4a2)
Glycosaminoglycan binding proteins [BR:
cvg00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
107096494 (col4a2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
107096494
NCBI-ProteinID:
XP_015248645
LinkDB
All DBs
Position
Unknown
AA seq
1664 aa
AA seq
DB search
MQRQHRGGTNLRLLLLCLYIAIIASGAQAGGKKHSGPCGGRDCSGGCKCFPEKGARGLPG
PLGPQGPQGPLGRPGDPGIQGQKGQKGDQGIGGIIGPKGGMGMTGVPGFSGNDGIPGHPG
QPGSRGKPGADGCNGTKGEPGFSGLPGYLGPPGNPGLYGKKGEKGDSLDVNVYMLRFRGD
PGTPGENGWPGLQGRPGSSGNRGPQGPKGPPGPPGVRGPKGTMTKVLKGIKGEAGEIGLP
GPPGNFTEQYRLPPPVPPQFRGDKGESGDLADNHDNKGESGITGFPGPRGESGADGPPGL
RGEPGDPGLNGVDGPKGVRGDPGELITSGGTALPGLPGYPGEEGPQGEKGPTGDPGYPGP
PGPPASSTQQAFVSFGPFGFKGERGDKGLPGDPGRPAVSPGSPGPDGRPGSRGPPGIKRS
MKEFFKGDKGFRGQPGNGGFKGIKGDHGECKCSGDNFPRGLAGPPGEPGDAGMTGEFGYD
GDIGDPGPRGADGLPGPAGINGFQGPKGRKGETGVARQKGYPGDPGDPGNDGIQGIPGAP
GPNGLNGFPGNRGLPGEGPIGERGDKGFPGWPGTAGPLGEIGKPGENFAGIKGLRGPSGD
EGLPGYDGIPGPPGSPGGCIPDGDGGQVDVTGACEPIPGPPGLPGPRGFSGISGSPGDRG
PKGVKGASGVKGEKGEQGDRGTSGFPGPQGFVGPRGEPGIPGTRGSEGTPGSPGIPGRDG
FQGDKGAHGEIMDASPGPPGDPGIPGLQGKKGQTGEPGPPGFAGINGMPGMIGFRGPKGA
PGLPGEEGRPGPAGTYGYPGDPGQSGPPGPTGAIGETGITGERGPDGDPGPPGPIGLKGM
PGAYGDDGTVGEQGPQGDPGQQGATGRPGIQGKKGEKGSPGTSGFGGVGGNPGLKGFEGQ
KGGAGVPGEPGLKGQTGKKGEKGESGLTGPRGIMSPKMLVDIKGVKGDHGHQGDPGFTGP
RGAKGVQGWPGLDGAHGLPGDPSTEKGVSGDPGAQGLPGVKGMPGSPGNRGIQGFDGMHG
NKGGKGSPGAYGQSGLKGRKGAKGDKGIRIDLPGSKGLRGEDGFDGEPGVKGILGPIGDI
GITGFDGVQGVKGQSGDPGIVGYQGLDGDRGTPGNQGQKGFPGIPGKDGLPGVPGFSGIK
GYPGLKGLFGLDGLKGQQGVKGTPGLTVYGPIGETGIKGNKGESGLPNSEPGAPGPAGLK
GYQGPPGDFGQPGEPGLRGLKGPDGSPNIPGKRGDPGLPGGPGLQGYPGARGQPGLDAFP
GEKGLQGDYGFPGSPGWKGYQGDPGPAGYKGADGVFGKKGPKGDQGYMGFPGQIGLKGER
GPTGPKGDTGIPGYPGAAGNRGPAPPSIRIPGERGPPGPRGIQGPKGSTGEPGPRGPPGD
PGFMGPIGDKGMPGISGTPGVPGFRGDVGEVGHHGLQGTEGQRGRPGIPGLPGMAGRSIS
VGYLLVKHSQSEQTPMCPVGMSKLWDGYSLLYLEGQEKAHNQDLGLAGSCLPRFSTMPFL
YCNPGDLCYYASRNDKSFWLSTTAPLPMMPVEEGEIKPYISRCSVCEAPSVAIAVHSQDI
TIPQCPVGWRSLWIGYSFLMHTAAGNEGGGQSLSSPGSCLEDFRTTPFIECNGAKGTCHY
FANKHSFWLTSIDQSFHSQPSAETLKAGQLLSRISRCQVCMKNL
NT seq
4995 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaggcagcacagagggggaacaaacctgaggctgctgcttctttgcctttacatc
gccatcatcgcctctggagcgcaagctggtggaaagaagcacagtggtccatgtggggga
agagactgcagcggaggttgtaaatgctttccagaaaagggtgccaggggtctcccaggg
cctcttggtcctcagggcccacaaggacccctagggcgaccaggggatcctggtattcaa
ggacaaaaggggcagaaaggtgaccaaggaattggtggcatcataggtccaaaaggcggc
atgggaatgactggtgttcctgggttctctggaaacgatggaattcctggacacccagga
caacctggatccagagggaagccaggagcagacggctgtaacgggaccaaaggagaacca
gggttctcaggactaccgggttatttggggccccctggaaatcctggactatatggcaag
aagggagagaagggggattctctggatgtcaacgtttacatgctgcgcttcaggggagac
ccagggacacctggagaaaacggatggccggggcttcaaggaagaccagggtcctcaggt
aacagaggccctcaaggacccaagggtcctccgggtcctccaggggtccgtggaccgaag
ggtaccatgaccaaagtgttgaagggaatcaaaggagaagcaggagagatcggactacca
ggcccaccaggaaacttcactgaacagtatcgtctgcctccccctgtaccacctcaattc
agaggggacaagggagaaagtggagatctggcagacaaccatgacaacaaaggagaaagt
ggtataacgggattccctgggccccggggtgaaagtggtgcagatgggcctcctgggctg
aggggtgagcctggagatccagggctaaacggagtagatggtcctaagggagtcagaggt
gatccaggagagttgattacttcaggaggtactgcgcttcctggtcttcctggataccct
ggtgaggaggggccacaaggagagaagggtccaactggagatccaggctaccccggacct
cccggaccccctgcctctagcacacagcaagctttcgtttcctttggcccttttggtttt
aagggggaacgaggagataagggtctaccaggagacccaggaagacctgctgtctctcca
ggatctcctggaccggatggaaggccagggagcagaggccctcctggaatcaaaagatca
atgaaagagtttttcaaaggagataaaggattcaggggacaacctggcaatggaggattc
aaaggaataaaaggagatcatggagaatgcaagtgcagtggtgataatttcccccgtggt
ttagctggtcctcccggtgagcctggtgatgctgggatgactggggagtttgggtatgat
ggggatataggagacccaggtccccgaggagcagatggtttacctggacctgctggcatt
aatggtttccaggggcccaaaggtcgaaaaggagaaacaggtgttgcaagacaaaaagga
tatccaggggacccaggagacccagggaatgatggaattcaagggatacccggtgctcct
ggcccaaacggccttaatggtttccctggtaaccgcggccttccaggtgaaggtcctata
ggagaacgtggagacaaagggttccctggatggcccggtacggctggtcctttaggagag
ataggaaaaccaggtgaaaactttgcaggtatcaaaggactgcgtggtccttctggagat
gaaggcctccctggctatgatggaattcctggtccgcctggaagtcccggcggctgtata
ccagatggagatggaggacaggtggatgtgacaggtgcttgtgaacccatcccaggtcct
cctggcctgcctggacctcgtggatttagtggaatatcaggttctccaggggatcgtggc
cctaaaggtgtaaaaggtgcaagtggagtgaagggagagaaaggagaacaaggggaccgg
ggaacaagcggctttcctggaccacaaggttttgtcggtccccgaggagaacctgggatt
cctggcaccaggggttcagaaggtacccctggtagccctggtattcctggccgagacggg
tttcagggtgataagggtgcccatggagaaataatggatgcatcacctggacctccaggt
gacccaggaatacctggcttgcaaggaaaaaaaggccaaacaggagaaccgggaccacca
ggttttgcaggaataaatggaatgcctggaatgattggcttcagggggcccaaaggtgcc
ccaggcctgcctggggaagagggaagacctgggccagctggcacatatggctaccctggt
gatcctggtcagtctggtccacctggtccgactggcgctattggagagacaggaataacc
ggagagagaggtccagatggagacccaggtcctccaggtccaatagggttaaaaggaatg
ccaggtgcttatggagatgatggcaccgttggagagcagggcccacaaggtgaccctgga
caacaaggtgcaactggaagaccgggaattcaaggaaagaaaggagagaaaggttctcct
ggaacgtctgggtttgggggtgtcggtggaaatcctggtctgaagggctttgaggggcaa
aaaggaggggcgggggtgcctggtgagcctggcctgaaaggtcagacgggaaaaaaggga
gagaaaggtgagtccggtctgaccggtccacgggggattatgtcccccaaaatgcttgtt
gacataaagggagtcaaaggagatcacgggcatcaaggcgatccaggttttaccgggcca
agaggtgccaaaggtgtacaaggttggccaggccttgatggagctcacggtctgccagga
gaccccagtactgaaaaaggtgtttctggagatccaggtgcacagggcctgccaggggta
aaaggaatgccagggtcacctggtaaccgaggcattcaaggctttgatggaatgcatggt
aacaagggaggcaaaggaagccccggtgcctacggtcagtcgggattgaaaggaaggaag
ggggccaaaggcgataaaggcattcgtatagaccttccaggatctaaaggactgagagga
gaggatggatttgatggagaaccaggtgtgaaaggaatactgggaccaattggggacatt
ggtataactggttttgatggtgtccaaggagtaaagggacaatctggagatccgggaata
gtgggttaccaagggttggacggggacaggggaactccaggaaaccagggtcaaaagggt
tttcctggtattccagggaaagatggtctgccaggcgttcctggcttctctggaattaaa
ggttaccccggccttaagggtctttttggattagatggactgaaaggacaacagggtgtc
aaaggaacaccaggtctgactgtttatggacccattggagagacaggaattaaagggaat
aaaggagaaagtggtttacccaatagcgagccaggtgctccaggtccagctggtttgaaa
ggctaccaggggcctccgggtgactttggtcaacctggagaaccaggactccgtggcctt
aaaggaccagatgggagcccaaacattcctggaaaaaggggggatcctggccttccagga
ggtcctggattgcaaggttatccaggagcaaggggacagcctggtttggatgcttttcca
ggagagaaaggtttacaaggagactatgggttccctggttcacctggttggaaaggatat
caaggagatccaggtccagcgggctacaagggggctgatggcgtctttgggaagaaagga
ccaaaaggagaccaaggttacatgggatttcctggacagataggtttaaaaggagagaga
ggaccaactggtccaaaaggagacactggaattccaggttatcctggggcagctggcaac
cggggtcctgctccaccttccattcgaattccaggagaaagaggtcctccgggaccacgg
ggtatccaaggcccgaaaggatctacaggggagccaggacctcgaggcccacctggagat
ccagggttcatgggaccaattggagataaaggtatgcctgggattagtggcactccagga
gtcccgggtttccgtggagacgttggagaagttggacaccatggtctccaaggaacggaa
ggtcaaagaggcaggccaggtatcccggggttacctgggatggctggccgcagcatcagc
gtgggctacttgcttgtgaaacacagtcagtcagagcagacgccgatgtgtccggtggga
atgtctaaactctgggacggttacagtctgctgtacctggagggtcaggagaaggcccac
aaccaggacctgggtttggctggttcctgcctcccacggttcagcaccatgcccttcctc
tactgtaaccctggagacctttgttactatgccagtaggaatgataagtccttctggttg
tcaaccactgctccccttcccatgatgcctgtagaggaaggagaaattaagccatacatc
agccgttgctccgtttgtgaggctccatcagtcgctattgcggttcatagccaagacatc
accattccacagtgtcccgtgggctggaggagcctgtggattggctactctttcctcatg
cacacagcagcaggaaacgaaggcggcggccagtccctgtcgtcgcctgggtcctgcctg
gaggacttccgcacaacaccgtttatcgagtgtaatggggccaagggcacatgccactac
ttcgctaacaaacacagcttctggctgacatctatagaccagtctttccacagccagccg
tccgcggagacattaaaagcaggccagctcctttcacgcatcagccgctgccaggtctgc
atgaagaacctgtga
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integrated database retrieval system
