Cyprinodon variegatus (sheepshead minnow): 107096512
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Entry
107096512 CDS
T06110
Name
(RefSeq) probable global transcription activator SNF2L2
KO
K11647
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-]
Organism
cvg
Cyprinodon variegatus (sheepshead minnow)
Pathway
cvg03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
cvg00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
107096512
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cvg03021
]
107096512
03036 Chromosome and associated proteins [BR:
cvg03036
]
107096512
Transcription machinery [BR:
cvg03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
107096512
Chromosome and associated proteins [BR:
cvg03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
REST complex
107096512
Chromatin remodeling factors
BAF complex
107096512
PBAF complex
107096512
GBAF(ncBAF) complex
107096512
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
SnAC
Bromodomain
HSA
BRK
QLQ
ResIII
HDA2-3
DEAD
Motif
Other DBs
NCBI-GeneID:
107096512
NCBI-ProteinID:
XP_015248677
Ensembl:
ENSCVAG00000016571
LinkDB
All DBs
Position
Unknown
AA seq
1536 aa
AA seq
DB search
MSTPSDTSGGMSHPGPSPGAGLSPGPILGPSPGPDPSPGSVHSMMGPSPGPGTPNAPHGM
QSQGQGDYSQDNMYPMHKPMEAAMNDKTMSEAMHFSHMKGVGMRSLHSGMGPPQSPMDQH
SQGYMSPHPSPMGIHEHASSPMSGGGGGPTPPHIPPSQSGPMMPMDPQGGMPNMSAMGPQ
GRGPSAFSPVQLQQLRAQILAYKILARGQPLPDNLQLAVQGKRSLPTMQQQQPVPQQQQQ
QQQQQQPPQQQQASGASPYRPSGMAPMSGPQSSPCPTPAMQGHNQSTAAKPWTDGQGGDN
QANAQKHLTPVPSGRPSPAPPPIPAGPSGPLPGSSAAAHPPGQQVSPMLQMQQKQNRITP
VQKPQGLDPVGILQEREYRLQARIAHRIQELESLPGSLPPDLRTKATVELKALRLLNFQR
QLRQDVVACMRRDTTLETALNSKAYRRSKRQTLREARMTEKLEKQQKLEQEKKRRQKHQE
YLNSILQHAKDFKEYHRSVSGKTQKLTRAVANWHTNTEREQKKETERIEKERMRRLMAED
EEGYRKLIDQKKDKRLAYLLQQTDEYVANLTSLVYEHKAAQAAKEKKRRKKKKKKVEGDG
EGTSAIGPDGEPMDESSQMSELPVKVIQTSTGKVLQGTDAPTSGQLEAWLEMNPGYEVAP
RSDSEESGSEFEEEDEEEMGKAETEEKKKTDPSGDEGDKHDAKNIIESAKQDVDDEYSVP
TGQTSSQSYYGVAHAVIEKVEKQSSLLINGTLKHYQIQGLEWMVSLYNNNLNGILADEMG
LGKTIQTIALITYLMEYKRLNGPYLIIVPLSTLSNWVYELDKWAPSVVKIAYKGTPALRR
GLVPQLRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYV
APRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEETI
LIIRRLHKVLRPFLLRRLKKEVESQLPEKVEYVIKCDMSAIQKVLYRHMQKGILLTDGSE
KDKKGKGGAKTLMNTIMQLKKICNHPYMFQHIEESFAEHLGYPNGIISGHDLYRASGKFE
LLDRILPKLQATGHRVLLFCQMTSLMTIMEDYFGYRNFQYLRLDGTTKSEDRAALLKKFN
EEGSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLR
LCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEQNEEEDEV
PDDETLNQMIARNEDEFELFMRMDMDRRREDARNPKRKPRLMEEDELPSWIIKDDAEVER
LTYEEEEEKMFGRGSRCRRDVDYSDALTEKQWLRMPLDHFVTLIFSISRSGRQLSEVFVQ
LPSRKELPEYYELIRKPVDFKKIKERVRNHKYRSLGDLEKDVMLLCQNAQTFNLEGSQIY
QDSIVLQSVFKSARQKIAKDEDSEDDSDEEDDDDYDSEAEAKSVRVRIKLGREGRSHDKG
KKRQSRGKAKPVVSDDDSDDDQDDNDQSDKSKSDED
NT seq
4611 nt
NT seq
+upstream
nt +downstream
nt
atgtccacgccttcagacacgtcaggtggcatgtcccatcctggcccatcaccaggggca
ggcctgtccccagggcccatcttgggccccagccctggaccggatccctcccctggttca
gttcacagcatgatggggcccagtcctggaccaggaacacccaacgcaccccatggcatg
cagagccagggacaaggcgattactctcaggacaacatgtatcctatgcataagcccatg
gaggcagcaatgaatgacaaaactatgtctgaggcgatgcatttcagccacatgaaaggt
gtgggcatgaggtccctccacagcggcatgggacctccacagagccctatggaccagcat
agccaaggttacatgtctccacatccgtccccgatgggaatccatgagcatgcttccagt
cccatgtcaggaggtggaggtggtcctacaccgccccacattcctccatctcagtcaggc
cccatgatgcccatggatcctcaaggagggatgcccaacatgtctgcaatgggcccacaa
ggacgtggcccctctgctttcagcccagtgcagctgcagcagctcagagcccagattctg
gcctataagattctggcccgagggcagccgctgccagacaacctccagctggccgttcag
ggcaaaaggagtctccccacaatgcagcagcaacagccggtgccacagcagcagcaacaa
caacagcagcagcagcaaccaccgcagcagcagcaggcatctggtgccagcccatacagg
ccttcaggtatggcgcctatgagcggcccccaatcaagcccctgcccaacaccagccatg
caaggacacaatcaaagcacagcagccaagccttggactgatggtcaaggtggtgacaat
caagcaaacgcacagaagcacctcactccggtacccagtggccgcccatctcctgcaccc
ccgccgatccctgcaggaccctctggaccgttgccagggagttcagcagctgctcaccct
ccgggtcagcaggtgtcccccatgctccaaatgcagcagaagcagaaccgaattactccg
gtccagaagcctcagggtttggacccagtgggaatcctgcaggagagagagtacagactg
caggcccggattgctcatcgcatccaggaactggagagtctacctggttccttgcctccg
gaccttagaactaaagctacagtggagctcaaggcgctacgtctgctcaacttccagcgc
cagctcaggcaggatgtggtggcgtgtatgaggcgagacacgaccctggagacggccctc
aactcgaaggcttacaggcgcagcaagcggcagacgctgagggaggcgcgcatgacagag
aagctggagaagcaacagaaactggagcaggagaagaagcgccgacaaaaacatcaggaa
tacctcaacagtattcttcagcatgccaaggactttaaggaataccaccgctcagtgtcc
gggaaaacccagaaactcaccagagctgtcgcaaactggcacacaaacaccgaacgggag
cagaagaaggaaactgagagaattgagaaggagagaatgagaagactgatggcagaggat
gaggaaggctaccggaaactcattgaccagaagaaggacaaacgtctggcctatttgctg
caacagacggatgaatatgtggccaacctcacatctctggtgtatgagcacaaagctgct
caggctgccaaggagaagaagaggaggaagaagaaaaagaagaaggtggaaggagacggc
gaaggcaccagcgccattggacccgatggagagcccatggatgagagcagccaaatgagc
gagctgccagttaaagtgattcagacgtcgactgggaaggttctgcaggggacagatgcc
ccgacgtctggccagctggaggcttggctggagatgaaccctgggtatgaagtcgcccca
cgttcagacagtgaggaaagtggctccgaattcgaggaggaggatgaagaggaaatgggc
aaggcggaaacggaggagaagaagaaaaccgatcccagtggagacgaaggggataagcac
gatgccaagaacatcatcgagtcagccaaacaagatgtggatgatgagtacagcgttccc
actgggcaaaccagctcccagtcttattatggggtggcccacgccgtcattgagaaggtg
gagaagcagtcgtctctgctgataaacggcacgctcaaacattatcagatccaggggctc
gagtggatggtgtccctctacaacaacaacctcaacggcatcctggctgatgaaatgggc
ctcggtaaaaccatccagaccatcgccctcatcacctacctgatggagtacaagaggctc
aacgggccctatctcatcatagtccccctatcgactttgtccaattgggtttatgaactt
gacaaatgggctccttctgtggtcaaaattgcgtacaagggcactcctgctctgcgtcgc
ggtcttgtacctcagcttcgcagcggcaaatttaatgttcttctgactacctatgagtac
atcatcaaggacaagcacatactggccaagatccgctggaagtacatgattgtggacgag
ggccatcgtatgaagaaccaccactgtaaactgacacaggtgttgaacacccactatgtg
gccccccgccggctcctccttaccgggaccccgctgcagaacaagctgcctgagctgtgg
gctctgctcaacttcctgctgcccaccatcttcaagagctgcagcacctttgagcagtgg
ttcaatgcacctttcgccatgactggagagagggttgaccttaatgaggaggagaccatt
ctaatcattcggcgtctgcataaggtgctccgcccatttttgcttcgaagactgaagaag
gaggtggaatctcaactgccagagaaagtggaatacgtcattaagtgtgacatgtcagcg
atccagaaggttctctaccgccacatgcagaaaggcatactgctaaccgacggctcagag
aaagacaagaagggcaaaggaggtgctaagaccctgatgaacaccatcatgcagctgaag
aagatctgtaaccatccgtacatgttccaacacatagaggaatcttttgctgagcacctg
ggctacccgaatggcatcatcagtggacatgatctatacagagcttctggaaagtttgag
cttctcgatcgaatcctacccaagctccaggccactggccacagggtgctgctcttctgc
cagatgacctctttgatgaccatcatggaggattacttcggttatcgtaacttccagtat
ttacggcttgatggaaccaccaaatctgaggaccgtgctgctctcctgaagaaatttaac
gaggaaggatctcagtacttcatttttctcctcagtaccagagcaggtggccttgggctc
aacctgcaggctgcagatacagtcgtcatctttgacagtgactggaacccacaccaggat
cttcaggcccaggatcgggctcaccgcatcggacagcaaaatgaggtccgtgtgcttcgt
ctctgcacggtcaacagcgtggaggaaaaaatcctggctgctgccaaatacaaactaaac
gtggatcagaaggttatccaagcaggcatgtttgaccagaaatcctccagccacgagcgg
cgggccttcctccaagccattttagaacacgaggaacagaacgaggaggaagacgaggtc
cctgatgatgaaacccttaaccagatgatcgcccgcaatgaagatgaatttgagctgttt
atgcgcatggacatggaccgtcgtcgagaagacgccaggaacccaaaacgtaagcctcgc
ttaatggaagaagatgagctgccttcctggatcatcaaggacgatgctgaggtggagagg
cttacctatgaggaagaagaagagaagatgttcggccgcggatcacgctgccgtcgggac
gtcgattacagcgacgccctgaccgaaaagcaatggctgcgaatgcctttggaccacttt
gtaacgttgattttctctattagcaggtcaggaaggcaactgagtgaggtgtttgtgcag
cttccatccaggaaggagctccctgagtactatgagctaatcagaaaacctgtggacttc
aaaaagatcaaggagcgagtgagaaaccacaaataccgaagtttgggagacctggagaag
gacgtgatgcttctctgtcagaatgcacaaacgtttaacctggagggatcccagatatac
caggactccattgttcttcagtcagttttcaagagtgccagacagaagattgccaaggac
gaagacagtgaggatgacagcgatgaggaagatgatgacgactatgactcagaggctgag
gctaagtctgtgcgggtgaggatcaagctgggcagggagggacgcagccacgacaaaggc
aagaagaggcaaagccgcggaaaggccaagccggtggtcagcgacgacgacagtgacgac
gaccaggatgataacgatcagtcggacaagagcaaaagtgacgaggactga
DBGET
integrated database retrieval system
