Cyprinodon variegatus (sheepshead minnow): 107096789
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Entry
107096789 CDS
T06110
Symbol
vps39
Name
(RefSeq) vam6/Vps39-like protein
KO
K20183
Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39
Organism
cvg
Cyprinodon variegatus (sheepshead minnow)
Pathway
cvg04140
Autophagy - animal
cvg04148
Efferocytosis
cvg05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
cvg00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
107096789 (vps39)
04148 Efferocytosis
107096789 (vps39)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
107096789 (vps39)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cvg04131
]
107096789 (vps39)
Membrane trafficking [BR:
cvg04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
107096789 (vps39)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Vps39_1
CNH
zf-Vps39_C
TPR_Vps41
Clathrin
Motif
Other DBs
NCBI-GeneID:
107096789
NCBI-ProteinID:
XP_015249083
Ensembl:
ENSCVAG00000006184
LinkDB
All DBs
Position
Unknown
AA seq
858 aa
AA seq
DB search
MHDAYEPVNILEKLPLQIDCLAAWGEWLFSHLPVVHRWLFVLQPQLSPRTLYVVSQYKIL
VSLLENNIHVHDLLTFQQITVVSKAKGATLIACDLQQTSTGEQSLRMCVAVKRKLQLYYW
KDREFHELQSDLGVPDIPKSMAWCENSICVGFKRDYYLIRLDGRGSIKELFPTGKQLEPL
VAPLADGKVAVGQDDLTVVLNEEGVCTQKCALNWTDIPIAMEHQPPYIIAVLPRYVEIRT
LEPRLLVQNVELQRPRFITSAGPNIVYVASNHFVWRLVPVSIASQIRQLLQDKQFELALQ
LAKMKDDADGDKKQQIHHIQNLYAFNLFCQKKFDDSMQVFAKLGTDPTHVIGLYPDLLPS
DFRKQLHYPNPLPTLSVAELEKAHLALIDYLTQKRSHLVKQLNDSDPSTTSPLMEGTPTI
KSRKKLLQIIDTTLLKCYLHTNVALVSPLLRLENNHCHIEESEYVLKKSQKYSELIILYE
KKGLHQKALQVLLDQSTKANSPLKGHERTVQYLQRLGAENLGIIFEFSPWVLKICPEDGL
KIFTEDLPEVETLPRDKVLQFLKEGFEELAIPYLEHIIYEWDEKGPEFHNVLIQLYLSRV
QGLMKQYLNSLPEGVPAVPAGHEKGELGSFRNKLLSFLDISTSYEPGRLISDFPFDGLLE
ERALLLGRMGKHEQALFIYVHVLNDTHMAEEYCHRHYNSSVEGNKDVYLSLLRMYLSPPD
SHYLGPITMELTEPKANLQAALQVLELHHSKLNTSKAINLLPANTQIREIRVFLESVLEE
KAQMKRCNQVLKSLLQAEFLRVQEERIFHQQVKCVITEEKTCRVCKKKIGNSAFARYPNG
VVVHYFCCKDRSVCPTEQ
NT seq
2577 nt
NT seq
+upstream
nt +downstream
nt
atgcacgacgcttatgagccagttaatattttggaaaagcttccccttcagatcgactgt
cttgctgcttggggtgagtggcttttttcacaccttcctgtcgttcatcggtggttgttt
gtccttcagcctcaactgtcccccaggacactatacgttgtctctcagtacaaaattctt
gtcagtcttttggagaacaacatccacgtccatgacctcttgacctttcagcagatcact
gtggtgtctaaagccaaaggggccacactcatcgcatgcgacctgcagcaaacaagtaca
ggagagcaaagcctcagaatgtgcgtggcagtgaaaaggaaactccagctgtattactgg
aaggatagagagtttcatgagctgcagagcgacttgggtgtgccagatattccaaagtcc
atggcttggtgtgaaaactccatctgtgttggtttcaaacgggactattaccttattcgg
ctggatgggcgcggctccatcaaggagctcttccccactgggaaacagttggagcctctg
gttgcccccctggctgatggaaaggtggctgttgggcaggatgaccttactgtggtactt
aatgaagaaggagtttgcacccagaagtgtgccctgaactggacagacatccctatagcc
atggagcaccagcctccatacatcattgcagtcctcccgcggtacgtggagatccggacc
ttggagccacggctgctggtgcagaatgtggagctgcaaaggccacgtttcatcacatca
gcagggccaaatatcgtttatgtcgccagcaaccattttgtttggcgcctggttccggtg
tcgatagccagccagatccgacagcttctccaggacaagcagtttgagctggcgcttcag
ctcgcaaaaatgaaggatgatgcagatggtgacaagaagcagcagattcatcacatccag
aacctttacgccttcaacctgttttgccagaagaaatttgatgactccatgcaggtgttt
gctaaacttggcaccgatcctacacatgtgatcggactttacccagacctactcccatca
gacttccgcaaacagctgcattacccaaaccctctgcctacgctgtctgtcgccgagctg
gagaaagctcatctggcccttatagattatcttacccagaaacgcagccaccttgttaag
cagctgaacgactctgacccctccaccacgtctccactcatggagggcacaccgaccatt
aaaagccgcaaaaagctcctgcagatcattgacaccacgttgctgaaatgttatctgcat
acaaacgtggcccttgtctctcctcttcttcgactggaaaacaaccactgtcacattgag
gaaagcgagtacgtcctgaagaaatcccagaagtacagcgagctcatcattctgtatgaa
aaaaagggcttacaccagaaagctttgcaggttctgttggaccaatccaccaaggccaac
tctcctctgaaaggccatgagcgaaccgtccagtacctccagcgacttggagcagagaat
ctgggcataatcttcgagttttccccatgggtgcttaagatctgtccagaggatggcctg
aagatctttactgaagatctgcctgaggtggagactttgcctcgagacaaagtgcttcag
ttcctgaaggaaggctttgaggagctggccatcccgtatctggagcacatcatctacgag
tgggatgagaagggcccggagttccacaacgtcctgattcaactgtacctgagcagggtt
caaggcctgatgaaacagtacctcaactcgctgccagaaggggttcctgctgttcctgct
gggcatgagaaaggtgaactgggaagcttcaggaataagctgctgtccttcctggatatt
tctaccagctacgaacctggcagactcatcagcgactttcctttcgatgggttgctggag
gaacgggctttgctcctgggtcgcatgggtaaacacgaacaggctcttttcatatatgtt
cacgttctcaacgacacccacatggctgaagaatactgtcaccggcattataacagttca
gtggagggaaataaggacgtttatctgtccttgctgcggatgtacctctccccccctgac
tctcactacctggggcccattacgatggagctcactgagcctaaggcaaacctgcaggca
gccctgcaggtcctggagctgcaccacagcaagctgaacacctccaaggctattaatctg
ctcccagcaaacactcagatccgagagataagggtgtttcttgagagcgtcctggaggag
aaggcccagatgaagcgctgtaatcaggtgttgaagagtctcctgcaggccgagttcctc
cgggtgcaagaggaacgaatcttccatcagcaggttaaatgtgtaataacagaagaaaaa
acctgcagagtctgcaagaagaagataggaaacagtgcatttgccaggtatcctaatggt
gtggttgtgcattatttctgctgcaaagatcgcagcgtctgccccactgagcagtaa
DBGET
integrated database retrieval system
