Cyprinodon variegatus (sheepshead minnow): 107096860
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Entry
107096860 CDS
T06110
Name
(RefSeq) homeobox protein SIX5-like
KO
K19474
homeobox protein SIX5
Organism
cvg
Cyprinodon variegatus (sheepshead minnow)
Brite
KEGG Orthology (KO) [BR:
cvg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cvg03000
]
107096860
Transcription factors [BR:
cvg03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain SINE
107096860
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SIX1_SD
Homeodomain
Homeobox_KN
Motif
Other DBs
NCBI-GeneID:
107096860
NCBI-ProteinID:
XP_015249223
LinkDB
All DBs
Position
Unknown
AA seq
995 aa
AA seq
DB search
MASLSLESTEQSDNSPEDPSVAESKEDKESSHVSEHLLQSFQKSALSFSTDQVSCLCEAL
LQAGNVDRLWSFLSTIPPSSELLRGNETLLKAQALVAFHREEFKELYAILESHDFHPSNH
GFLQDLYLKARYKEAERSRGRSLGAVDKYRLRKKFPLPKTIWDGEETVYCFKEKSRNALK
ECYKSNRYPTPDEKKNLAKVTGLSLTQVSNWFKNRRQRDRTPSGTHSKSESDGNHSTEDE
AMDEATDKPEEPTSSTTSIISVSAVPCSTGGQLILNGSSGFLAASQPLLLNGNSLISSAG
AGVIINGLSLGDCQTVTLSPVAASSPLILNGAQVITKPGVSTQQHQAASSRAEQEASAVE
TKTVVLSTNGVQAPEPSTIISPPLQTKIKSDSDMDFMTSCNSEGGSQTVSPSSSSLSPSP
PALSSSTSLPSLVLTQNPQDQESVSLPASLPSSGLVISNSASQQGPWPSQLTPSTVSSIH
STPHIISLPQVVPSIHCAPVSQLVQSSTGAQCPQLVPVSPLTSVAPQFQSPHTQNIGSRP
QEQQQEPPTTISESAAAVASVPQLNNTTLQHINPTPIKVQPPQVLSLSSPTPGVPVSQAK
GSPSAQLASLSMPQLVPVSSIQTSPNFSFPQVVPASPALSIPSAGVPLQILASSPGSAGP
PQSPLRINQLSQIQRVGNSTSVAPAVQLLNPGIIQLPSPSTGNVVLGGSPYLSVQQGKLI
LTIPAGIQLTSLPLKPVQEASTVSANGVAGLLSPSTPPVACQPPHSSGSNSGGLAAPPLN
FISSSPLLCAPDTTSITTSQPPVVSTSPTLDQSVTMTTQSALTPESMLALGPMYSGVAPS
IQLSQPAWNPVSLSTSASLTLFDMRGKGELPVDPALLGLPGGESLLLGSSSLGREDETSS
PLRDPDEMDGEQKILTQLQSVPVDEDLGEIPQRAEGVVPQKAISFHQREEGAGSGHWPHV
HSGQQLVQEPPAERPKHRDFQFPNSTCWRTFRRNV
NT seq
2988 nt
NT seq
+upstream
nt +downstream
nt
atggcttccttgtctttagagtctacagaacaatctgacaatagcccagaagatccgtca
gtagccgagtccaaagaagacaaagaaagctctcatgtttcggaacatttgctccaaagt
ttccagaagtcggccctgagtttctccacagaccaggtttcatgcctgtgcgaggccctt
ctgcaggcgggtaatgtggatcgcctgtggagctttctctccaccatacctccttcgtcc
gagctgctacgtggcaacgagacgctgctgaaggcccaggcgctggtggctttccatcgg
gaggagttcaaggagctgtacgccatcctagagagccatgacttccacccgtctaaccat
gggttcctgcaggacctgtacctcaaagcccgctacaaggaggcagagaggtcccggggc
cgcagcctgggcgcagtggacaaataccggctcaggaagaagttccccctgcctaaaacc
atctgggacggagaggagacggtttactgcttcaaggagaagtcccggaacgctctgaag
gaatgctacaaaagcaacaggtaccccactccggacgagaagaaaaacctggctaaagta
accggactgtccctcacgcaagtcagcaactggttcaagaaccgcaggcagagggacagg
accccgtccgggacccacagcaaaagcgagtcagatgggaaccacagcactgaggacgag
gcgatggacgaagccaccgacaaaccagaggagccaacaagctccaccacctccatcatc
tctgtctctgcggtcccctgcagcacggggggccagcttatcctcaatggctccagcggc
ttcctggcagcttcacagccattgctgctgaacggaaactccctgatctccagtgccggg
gctggtgtcataatcaacgggctgagtctaggtgactgccagacggtcacgctgagccct
gttgcagccagctctcctctaatcctgaacggggctcaggtcataaccaaacccggggtc
agcacgcagcagcaccaagcggcctcttctagagcagaacaggaagcgtctgctgtggag
accaagacggttgttctgagcactaatggcgttcaagctccagaaccttccaccataatt
tctcctccacttcaaaccaaaataaaaagtgacagcgacatggattttatgaccagttgc
aattcagagggaggcagccagacagtatccccgtcctcttcgtctttatcgccctcccct
ccagctctgtcctcttcaaccagtcttccatcgcttgttttaacccaaaaccctcaagac
caagagtctgtctccctcccagcttctctgccctcctcaggcttggttatctccaactct
gccagtcagcagggaccttggccctcacagttaacaccttctacagtttcttctatccac
tccacccctcacatcatctctttgccccaagttgtgccttcaatccactgtgcaccagtc
tcccaactggtccagagctctacaggagcccaatgccctcagctagtcccagtatcccca
ctcacctcagtggctccacagtttcaaagccctcacactcaaaacataggtagcagaccg
caagagcagcagcaagagcccccaacaactatatctgaatctgctgctgctgtagcttct
gttccacagcttaacaacactaccctccagcacataaaccccacccccatcaaagttcag
cctccacaggttctctccttgtcttctcctacaccaggagtcccagtgtctcaagcaaaa
ggcagtccctctgctcagttagcctcactttcaatgcctcagctggttcctgtctcctcc
atccaaacctcccccaacttctctttcccccaggtggtgccagccagcccggcactctcc
atcccctctgctggtgtgcccttgcagatcttggcttcatcccctggatccgcagggcct
ccacagagcccgctcaggataaaccagctgagtcagatacagagagttgggaactcgacc
agcgtggccccggctgtacagctcctgaaccctgggatcattcagctaccttctccttcc
acagggaatgtcgttctcggtggaagcccatacctgagtgtgcagcagggaaagctgatc
ctgacaatcccagcagggatccagctcaccagtttacccctaaaaccagtccaagaagca
tccactgtctctgcaaacggagtggctggacttctgagtccctccactcctcctgtggcc
tgccagcctccacacagctcaggctcaaactccggtggactagcagctccccctttgaac
ttcatcagctcctcgcctctgctctgtgctcctgacaccaccagcatcaccaccagccag
ccgccggtagtctccacctctcccacgctagaccagtccgttaccatgacgacacaaagt
gcgcttactccagagagcatgctggcccttggccccatgtacagcggagtagcaccgagc
atccagctgtcccagccggcatggaaccccgtctccctctccacctcagccagtctgacc
ctgtttgacatgcgtgggaagggagagctacctgtagaccccgctttattaggtctaccc
ggaggagagtcgctcctgctggggagctcatctcttggaagggaagatgaaaccagctct
ccactgagggacccggatgagatggatggggagcagaagattctcacccagctccaatca
gtccccgtggatgaagacttgggagaaatcccgcagcgtgctgagggagtggtaccacag
aaagccatatccttccaccagagagaagaaggagctggcagcggccactggcctcacgtc
cactcaggtcagcaactggttcaagaaccgccggcagagagaccgaagcaccgagatttc
cagtttccgaactccacttgctggaggaccttcaggagaaatgtctga
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