Cyprinodon variegatus (sheepshead minnow): 107097019
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Entry
107097019 CDS
T06110
Name
(RefSeq) sodium channel protein type 4 subunit alpha B-like
KO
K04838
voltage-gated sodium channel type V alpha
Organism
cvg
Cyprinodon variegatus (sheepshead minnow)
Pathway
cvg04261
Adrenergic signaling in cardiomyocytes
cvg04519
Cadherin signaling
Brite
KEGG Orthology (KO) [BR:
cvg00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04519 Cadherin signaling
107097019
09150 Organismal Systems
09153 Circulatory system
04261 Adrenergic signaling in cardiomyocytes
107097019
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
cvg04040
]
107097019
Ion channels [BR:
cvg04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
107097019
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
IQ_SCN5A_C
Na_trans_cytopl
PKD_channel
IQ
DabA
Motif
Other DBs
NCBI-GeneID:
107097019
NCBI-ProteinID:
XP_015249467
Ensembl:
ENSCVAG00000015521
LinkDB
All DBs
Position
Unknown
AA seq
1951 aa
AA seq
DB search
MAAMLLPTGPDGLRRFTRESLAALEQRIAEEQAKSSKDCTETHKNAETTKPRVDLEAGKQ
LPRIFGDIPTELVGVPLEDIDPFYYKNQKTFIVLNKGKAIFRFSATSALYILTPFHFIRS
IAIRILVHSLFSYFIMFTILTNCFFMAMSDPPTWTKYLEYTFTGIYTFESAIKIFARGFC
LVPFTFLRDPWNWLDFTVIVMAYVTEFVDLGNVSALRTFRVLRALKTISVIPGLKTIVGA
LIQSVRKLADVMILTVFCLSVFALIGLQLFMGLLRQKCVRSLNHCINSSYSPNTTFICNN
RTWSSPADFLSNEDNFYKVEGQKDALICGYGSDAGKCPDGFDCLKVGRNPNYDYTSFDTF
GWAFLALFRLMTQDYWEELFHQTLRSAGKTYMVFFVLVIFLGSFYLVNLILAVVAMAYEE
QNQATIAEAWQKEREFQLAMEHLRREQRMAAKRQAQETDSIVSPELSPFCMKAGSIRRSN
SRRRRSHRTLSEETAAEAAEEKLDPMDEAVPPLSPLPVHPFLATLSSHPLSTRRGSQNSI
FSSFRARNNSEADFGDDEYSIHGEVFRSRTSSTATPWKKRTGSIRSHCSQVLTPSFNVNG
RLNIFLDQNGITNMGLLTPTSMPAHSMERFREETKNGSGVDTAPRLLLQPSPTATERCSV
RRKRTHSSFSFFSDAMEELEESRQKCPPCWYVFAKKYLIWDCCPWWLKLKECVKFMVMDP
FLDLGITICIVLNTLFMALEHYPMTDEFNTMLSVGNLVFTGIFTAEMVLKLIALDPYYYF
QQGWNIFDGVIVCLSLMELGLSTVEGLSVLRSFRLLRVFKLAKSWPTLNTLIKIIGNSVG
ALGNLTLVLAIIVFIFAVVGMQLFGKNYQDCVCKISIDCQLPRWHMKDFFHSFLIVFRVL
CGEWIETMWDCMEVAGQPLCILVFMLVMVIGNLVVLNLFLALLLSSFSSDNLSAPEEDGD
LNNIQIAIGRIQIGVSWLSRNIVDFFSHGLRKHKQKAKKATQAEPVVGNHIESNGGTIGS
YGGKYIIPEEDSYMTNPNLTVIVPIAPGESDVEFLEEENSESSEDEDNKPEKISLSEGST
VDMRKPGEEEDDLLELDDDSMDPENCFPDLCLRYCQCCDIDTSRGLGQAWWRLRKTCYQI
VEHSWFETFIIFMILLSSGALAFEDIYIERRKVIKVVLEYADKVFSYIFVLEMFLKWIAY
GFKKYFTNYWCWLDFLIVDVSLISLVANSLGYSDFAAIKSLRTLRALRPLRALSRFEGMR
VVVNALIGAIPSIMNVLLVCLIFWLIFSIMGVNLFAGKFGKCVNRTGFIHSVSVVNNKSD
CLAMNDTQFYWTKVKVNFDNVGLGYLSLLQVATFKGWMEIMNAAVDSRGVEEQPSREINL
YMYLYFVIFIIFGSFFTLNLFIGVIIDNFNQQKRKISGQDIFMTEEQKKYYNAMKKLGTK
KPQKPIPRPANLLQAFFFDLVSQQAFDIMIMMLIIINMVTMMVETDEQSERMESILNIIN
LVFIVIFTTECLIKLFALRCYFFTVAWNIFDFVVIILSIVGIVLADIIEKYFVSPTLFRV
IRLARIGRVLRLIRAAKGIRTLLFALMMSMPALFNIGLLLFLVMFIYAIFGMANFAYVKK
QDGIDDMFNFETFGNSIICLFQISTSAGWDNLLSPIMSSSPEECDINFVNTGTNARGNCG
NPSVGIAFFVSYIIISFLIVVNMYIAIILENFSVATEESTEPLSEDDFEMFYEVWEKFDS
EATQFIEFSMLERFADALSEPLRIPKPNKIQLISMDLPMVSGDKIHCLDILFAFTKRVLG
ESGDMDTLKQQMEEKFMMTNPSKVSHEPITSTLRRKMEEVSAVIIQRCYRRHLVRRQMKQ
ASYLYRQINYEIVVDVENAPETEGLIASMFQHFAPIAPQGEQTEEDIILSSPPSYDSVTQ
GACMSSSLTARTTSRGPELRDPVENYEETFL
NT seq
5856 nt
NT seq
+upstream
nt +downstream
nt
atggcagccatgctcttaccaacgggtcctgatggcttgcggcggttcactcgcgaatcc
ctggctgccctggagcagcggattgcggaggagcaagccaagagctccaaggattgcacc
gagactcacaagaatgctgagacaaccaaacccagggtggacctggaggcgggcaagcag
ctgccgcgcatctttggtgacattccaacagagctggtcggggtgccactggaggacatt
gatccattttactacaagaaccagaagacttttatagtactgaacaaagggaaggccatc
ttcagattcagcgccacatctgcactttatatattaactccatttcacttcatcagatcg
attgccatcagaattttagtccattcattgtttagctatttcataatgttcaccatcctg
accaactgtttcttcatggccatgtccgatccgccaacatggaccaaatatctggagtac
accttcactggcatttacactttcgagtcggcaataaagatttttgcgagaggattctgt
ttagtgccgtttaccttcctcagagacccttggaactggctcgacttcactgtcattgtc
atggcgtatgtcacagagtttgtcgaccttgggaatgtctctgctttgagaaccttcaga
gtactccgtgctctaaaaaccatctcagtcattccaggtctgaagacgatagtcggcgct
ctgatccagtctgtgaggaagctggccgatgtgatgatcctgaccgttttctgtctcagt
gtgttcgccctcatcggcctgcagctctttatgggccttctgcgacaaaaatgcgtccgt
agcctcaatcactgcatcaactcttcatatagccccaacacaacttttatttgcaacaac
aggacctggagctcgccagcagactttctcagcaatgaggataatttttacaaagttgaa
ggccagaaggatgctttaatttgtggatacggaagtgatgcagggaagtgtccggatgga
tttgattgcctcaaagttggaagaaatccaaactacgactacaccagttttgataccttt
ggctgggcttttctggcacttttccgcctcatgacccaagactattgggaggagctcttt
caccagactctgcgctcagctgggaaaacctacatggttttctttgttctggtgatcttc
cttggctccttctacctggtgaacctgatcctggccgttgtagccatggcttacgaggag
cagaatcaggcaactatcgctgaggcctggcagaaagagagggagtttcagctggccatg
gagcatctcagacgagagcaaagaatggcagccaaaagacaagcacaggagacagactcc
attgtgtccccagagttgtcgccattctgtatgaaagctggaagtatacgccgcagcaac
agcagaagaagaagatctcacaggactctttcagaggagacagcagctgaagctgctgaa
gagaagctggatcctatggatgaagctgtgcctcctttatcccccttgccagtccatccc
tttctggccacactgtcctctcaccccctcagcaccaggagaggaagccagaacagcatc
ttcagctctttccgcgctcgcaacaactcagaggccgacttcggggacgatgaatacagc
atccatggagaggtcttcaggagtcgcactagctcgactgcaacaccctggaagaagagg
acaggcagtattagaagccattgctcccaggtgttaactcctagcttcaatgtcaacggc
cgactgaacatcttccttgaccagaatggcatcaccaacatgggtttgcttactcctaca
tccatgccggctcacagcatggagagattcagggaagaaacaaagaatggcagtggagtg
gatacagctcccagacttctcctgcagccttcacccaccgccacagagcgatgctctgtg
cgcaggaaaaggactcacagctctttcagcttctttagcgacgccatggaagagctggag
gaatcaagacaaaagtgccccccttgctggtatgtgtttgccaagaagtatttgatatgg
gactgctgcccctggtggctgaagttgaaggagtgtgtgaagttcatggtgatggatcct
ttcctggatctggggatcaccatatgcattgtgctgaacactctgttcatggccttggag
cattacccaatgactgatgagttcaacaccatgctctcagtgggcaatctggtttttaca
ggcatctttacagctgagatggttttgaagctaatcgccctggatccctattactacttc
caacagggctggaacatcttcgacggcgtcatcgtctgcctcagtctgatggagctgggt
ctctccactgtagagggcctgtctgtgttgcgctctttcagactgttaagagtgtttaag
cttgcaaagtcctggcccactctcaacactctgatcaagatcatcggtaactccgttggc
gccctggggaacctgacgctggtgttggccatcattgttttcatcttcgctgtggtgggc
atgcagctatttggcaagaactaccaagactgtgtgtgtaagatctccattgactgccag
ctgccccgttggcacatgaaggacttcttccactccttcctgattgtgttccgggtgtta
tgtggcgagtggatcgaaaccatgtgggactgtatggaggtggctgggcagcctctttgc
atcctggtgttcatgttggtcatggtcattgggaacttggtggtgctgaatctctttctt
gccctattgctcagctctttcagctctgacaacctatccgctcctgaagaagatggcgac
ctgaacaacattcagattgccatcggtcgcatccaaatcggcgtttcttggctttctagg
aatatcgttgacttcttcagccatggcttgagaaagcacaagcagaaggccaaaaaagcc
acccaggctgagccggtagttggaaatcatatagaaagcaatgggggaactattggaagc
tacggaggaaagtacatcatacctgaagaggacagttatatgaccaacccaaacttgact
gttatcgttcccatcgctcccggagagtcagacgtggagttcctggaagaggagaattca
gagtcatcagaggatgaagacaacaaaccagagaagattagcctctcagaaggaagcaca
gtggatatgaggaagcctggagaagaggaagatgacctattggagctggatgatgatagt
atggacccagaaaactgcttccctgacttgtgtttaaggtattgtcaatgctgtgacatc
gacaccagccgtggattgggtcaagcttggtggaggctgaggaagacctgctaccagatc
gtagaacacagctggtttgagaccttcatcatcttcatgatcctgctcagcagcggggct
ttggcatttgaagatatctacattgagaggagaaaagtcattaaggtggtgttggagtac
gctgacaaagtcttctcctacatttttgtgctggaaatgttcctcaaatggatagcatat
ggcttcaagaagtattttaccaactactggtgctggcttgattttctcattgtggatgtg
tctcttattagtcttgttgcaaattcactgggatattctgactttgctgccatcaagtca
ctaagaacgctccgggctttgagacctctcagagctctgtccagatttgaaggcatgagg
gtggtagtcaacgctcttataggagccattccctctattatgaacgtgctgcttgtatgc
cttatcttctggctcatcttcagtatcatgggagtcaacctgttcgctggcaagtttggg
aagtgtgtgaacagaacaggttttatccacagcgtctcagtggtcaacaacaaatcagac
tgtcttgccatgaatgacacccagttctactggacaaaggtgaaggttaactttgataac
gttggactcggctacctttcacttttgcaagtggcaacatttaagggatggatggaaata
atgaatgcagccgttgattccagaggggtggaggaacaacccagcagagaaatcaacctc
tacatgtacctctactttgtcatcttcatcatatttggctcctttttcacccttaacctc
ttcattggggttatcattgacaatttcaatcagcaaaaaagaaagataagtggacaggat
atctttatgacggaggagcagaagaagtactacaatgcaatgaaaaagttgggaactaag
aaacctcaaaagccaataccaagacccgcgaaccttctccaagccttcttctttgatctg
gtctcccagcaagccttcgacatcatgatcatgatgctcatcatcatcaacatggtgacc
atgatggtggaaaccgacgagcagtcggagcgaatggagtccatcctcaacattatcaac
cttgtcttcatcgttatcttcacgaccgaatgcctgattaagctctttgctctccgatgt
tacttctttaccgttgcatggaacatttttgactttgtggtcataattctctcaatagtg
gggatagtcctcgctgatatcattgagaagtactttgtttctccaaccctgtttcgagtc
atcagactggcaaggatagggcgcgtacttcgacttattcgagcagccaaaggaatacgg
actttactgtttgccttaatgatgtccatgccggcgctgttcaatattggcctcctgctt
ttccttgtcatgttcatctatgctatctttggcatggcaaactttgcctatgtgaaaaaa
caagatgggatcgacgacatgtttaactttgagacctttgggaacagcattatctgcctt
tttcagatcagcacctcagcaggatgggacaacctcctgagccccataatgtcaagctct
ccagaggagtgtgacattaactttgtcaatactggcaccaatgctagaggaaactgtggg
aacccatcagtgggcatagctttctttgttagttacattattatttcttttcttattgtg
gtgaatatgtacatagctataatcctggagaacttcagcgttgcaaccgaggagagcaca
gaacctctgagcgaggatgattttgaaatgttttatgaggtctgggagaagtttgactct
gaagccactcagttcatagagttctcgatgttggagaggtttgccgatgctctttctgag
ccgctgcgaatcccgaagcccaacaagatccagctgatttccatggaccttcctatggtc
agcggggacaagatccactgcctggacattttgtttgctttcacaaaacgtgtacttgga
gagtcaggtgacatggacaccctcaagcagcagatggaggagaagttcatgatgaccaat
ccctccaaagtttcccatgagcccatcacttctactctgcgacgtaaaatggaggaggtg
tcagcagtcatcatccagaggtgttacaggagacatctggtgagacggcaaatgaagcag
gcatcttacctctacagacagatcaactatgagattgtggtggatgtagagaatgctcct
gagacagaggggctcatagcatccatgtttcagcactttgctcctatagcgcctcaaggt
gaacagacagaggaggacataattttgtcctcaccaccatcttatgatagtgtgactcag
ggggcatgcatgagctcctctcttacagccagaaccacatctagaggccctgaactcagg
gacccagttgaaaactatgaggaaacgtttctttga
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integrated database retrieval system
