Cyprinodon variegatus (sheepshead minnow): 107097052
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Entry
107097052 CDS
T06110
Name
(RefSeq) tenascin-like isoform X1
KO
K06252
tenascin
Organism
cvg
Cyprinodon variegatus (sheepshead minnow)
Pathway
cvg04510
Focal adhesion
cvg04512
ECM-receptor interaction
cvg04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
cvg00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
107097052
04518 Integrin signaling
107097052
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
107097052
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
cvg00536
]
107097052
Glycosaminoglycan binding proteins [BR:
cvg00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
107097052
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
EGF_TEN
EGF_Teneurin
Fibrinogen_C
EGF_Tenascin
fn3
EGF_2
DUF7949
hEGF
EGF
Fn3_Dep-1_3rd
FN3_DSCAM-DSCAML_C
Fn3_Dep-1_2nd
Big_5
EGF_integrin
Motif
Other DBs
NCBI-GeneID:
107097052
NCBI-ProteinID:
XP_015249510
Ensembl:
ENSCVAG00000015061
UniProt:
A0A3Q2E9B0
LinkDB
All DBs
Position
Unknown
AA seq
2193 aa
AA seq
DB search
MDPGLFPQMSPLLTSFILILLAGPAVLNPSASRELQVRTPRDAEKDSFKVVISEGCSSQG
DSSDISQGGKEIDLVPGSPLVLTHKIKLVPSGSGSGSCGCDGDFAALRERLESLEREVSD
LREKCGETGGSCCTSESKGAGCLIKPENGECPNECSDQGRCVDGKCVCFPGYTGPDCSES
GCPGNCNDHGRCVNGECVCDSGFSGPDCTQKACPDNCNSHGRCVNGQCVCDTGFTGPSCS
EESCPRNCNRRGRCTNGKCVCNAGFTGADCSKKACPGNCNNHGRCVNGKCVCDTGFAGPD
CSKIICPENCNNKGRCVDGQCVCNEGFAGADCSEVACPGNCNNRGQCINGQCVCDDGFTG
KDCLEKACLNDCNNRGRCVDGNCVCDSPFTGSDCNEITCPGNCNDRGQCVNGQCVCDDGF
TGAECSERTCPNSCSNHGRCVDGQCVCESDFTGDDCSESACPENCNDRGRCIDGQCVCYE
GFTGADCSEQACPNNCNNNGRCVDGECVCDVGFTGPDCAVIGCPNDCSNKGRCIKGRCAC
RRGFTGPDCSQCKDGMTGPNCNTAMSGVPQLNVEDITESSATLIWTHPSVQYETYYITFT
SLKETDQQITKQLDGSLTTFTQTGLAAGQKYIVSIVGEINGRRGAESSTSFMTLISGPTN
LQVVKTTSTSAVVQWEQSQGEIDRYRLTITPNDGIGRTQEMTVEAGKSSAHIQQLEAGRV
YNVLLEAEKDAVRSKPATTEVVPGNIFPMAAIEDLTVQVTRAPGQDVGSISGDYSISVNA
KTRPLVNTKSRNGTRPQIRRPTFPKPGLSRPNATRIMSGTRHVVPGTLLKNPMPLKIQEL
LKINKTKPDVQIIGDPVPDHSKEESSSKKSDSKGAVVISGHNFAPTGESSSEEQSYTDSN
IQPDAGITEAENENHSDTSAQTKNFPNQDKKCMNKIKVTNIRLPFKNRNKGCREDAIGLA
GSALSSLEESPSSEEDDVDYTPDPLHKLIAETFDKLNITTISVHLAKPLNLSTDADIVSR
QILKGMKPLPPLLASSSFTAKSSYLSARKPSSPAAEPPSSLTDTVSSSLSSLPSPSSTKP
SLSRSSVSSSATSLEDLDQHGNNELDFTTNSAPTVKSEIPSSEESSITAFHNTYPKKGFI
RRPYPNLLRPRNKTHHHLRVPVNSPLNLGNTPIKETKDVSSSPSFSISNKSPALEADTPG
KDRNIEGDRTNPNATSGIEESKKKMLIERRLNPLRRPTFKGTYQRRLHPNLQNRTRPVSQ
LLTTHSKSLNPNTDTPKEQMFPIELEQNSTHVSEDSLPTKTVSANQGSEGTGTRIPHTDI
SNGFHRIVKERVLPFSRQPNILKQHQHGESAQNKTFMNLRQRQHPKGTMRRPFLGRKQNG
GSHAVGHQSNVPGKYSSVGNPESQPETQNTQRSNSGFQTNQSGEQMNGMLGKNSRTHEKK
TTANEQIEDLNKEDNTLIQLEAAANSNIKQRDDTGRDIGPTDKSKTVSKPLRRITLPKRQ
PIDTADMGHQHGTHRIAGKQEKELAKTNPTAKTVFDTENEWTEGSASEVSSSVDKREPLD
YVGVKNQTSDGFTVVWDSPEGKYKNFVLSRTVVERDEKPKQKEDKQEEDEDQISKELSSE
NGSNKDNNKVPEDVRVPNIQRGAVNKPADEDKVFKQVLPGSARSLQFDHLPPQTEYTITL
LGKGPGILSKLHKLVISTGPEPPSNIVFSKVTENSLTVSWTKPKSNVNGFKVTYTNADEG
EPVSVTVDSQDSSLDLSQLAPGSSYEVTIISTLGLDESDPIKDTVMTLPDPPTNLQAVNV
NDTTALLLWRPALATVDKYTIVYGSGSGSELRLTVSGNAAEQQLSGLEGSTTYTVTVTSQ
LGSLESSPATTSFTTKSSSRSDNDGANDLKASDVTPRSAVMSWIPSSKPVEKYVLLYGRE
GEDRKEMIVSPDQRQYKLTRLHPGSLYKVELQSIRGGQLIGSSYTDFTTGTLLFPYPTDC
SQELQNGVFTSDVVEIFPQGELGQSMNVYCDMETDGGGWTVFQRRKDGSVNFYNGWRDYV
SGFGNLSGEFWLGLDNIHNLTKMTRMNLRVDLRDGDEQVFAKYTKFSVAKRNYKLSVGGY
SGTAGDSLSYHDNCVFSTKDRDPAPWITRCAISYQGGWWYKNCHEANLNGLYGIDFKHQG
VIWKSWKGEDHSIQFTEMKMRPASFISTVSRAK
NT seq
6582 nt
NT seq
+upstream
nt +downstream
nt
atggatcccggtctattcccccaaatgtctcccctcttaacatccttcattctgattctt
ctggctggaccagcagttctgaacccatcagcctccagggagttacaggtcaggacacca
agggatgctgaaaaggactcattcaaggtcgtgatctcagagggatgctcctctcaggga
gattcgtctgatataagccaaggaggtaaagagattgatctggtgcctggctctcctctg
gtgctgacccataagatcaaactggttccatcagggtcaggttctgggtcttgtggatgt
gacggcgactttgctgcccttcgggagcgattggaaagtctagagcgagaggtgtctgac
cttcgggagaagtgtggagaaacaggaggaagctgctgtacctcagaaagcaaaggtgct
ggctgcttgataaaaccagaaaacggtgaatgtcccaatgagtgcagtgatcagggccgc
tgtgtggatggcaaatgcgtctgcttcccgggctacaccgggccagactgcagcgagtcc
ggctgtcctggaaattgtaacgatcatgggagatgcgtgaacggggagtgtgtgtgcgac
tctggtttctctggtcccgactgcacccaaaaggcctgtccagacaactgcaacagtcat
gggaggtgtgtgaacggccagtgtgtatgcgacactggtttcacaggtccaagctgttcg
gaagaatcttgccccagaaactgcaacagaaggggccgctgtaccaatgggaagtgtgtg
tgtaatgctggatttacaggtgcagactgctccaaaaaggcctgtccgggaaactgcaac
aatcatggcagatgtgttaatgggaaatgtgtttgtgacactggctttgctggtcctgac
tgctctaagatcatctgtcctgaaaactgcaacaacaagggccgctgcgttgatggacaa
tgtgtctgtaatgagggcttcgctggagcagactgctctgaggtcgcctgtcctggaaac
tgcaacaacagaggacagtgtataaacggacagtgtgtttgtgacgacggatttacaggc
aaggactgcctggaaaaagcatgccttaatgactgtaacaaccgagggagatgcgtagat
ggaaattgtgtctgcgacagtcccttcaccggttctgactgcaatgagatcacctgtcca
ggaaactgcaacgacagaggacagtgtgtaaatggacagtgtgtctgtgacgatggtttc
actggtgcagaatgctctgaaagaacctgccctaacagctgcagcaatcatgggagatgt
gttgatggccaatgtgtctgtgagagtgacttcaccggtgatgactgttcagagtccgct
tgtccagagaactgcaatgacaggggacgctgcattgatggacaatgtgtctgctatgag
gggttcactggtgcagactgctctgaacaagcttgtcccaataactgcaacaacaatgga
aggtgtgtggatggggagtgtgtttgcgatgtcgggttcacaggaccagactgtgctgtc
ataggctgtcccaatgactgcagcaacaaagggcggtgcatcaaaggaaggtgtgcttgt
cggcgaggatttactggaccggactgcagccagtgtaaagatggcatgactgggccaaac
tgtaatactgccatgagtggtgtgccacagctgaatgttgaggatatcacagagtcttct
gccactttgatttggactcacccttctgttcaatatgagacctattacatcacctttacc
agcctgaaggagacagatcaacagataaccaagcagttggatggaagcctgactaccttc
acccaaacaggcctggcagctggacagaagtacatcgttagcattgttggagagattaat
ggcaggaggggagctgaaagctcaactagctttatgaccctcatctctggtccaacaaac
ctccaagttgtaaagaccacgtccacgtcagcagtagtccaatgggagcagtcacaggga
gagattgacaggtaccgtttgaccatcacaccaaacgacggaattggaaggactcaggaa
atgactgtagaagcaggcaaaagctctgctcatattcagcagctagaggcgggacgtgtg
tacaatgtcttgttggaggcagagaaggacgctgtccgtagcaagccagcgaccactgaa
gttgttcctggcaacattttcccaatggctgctatcgaggacctgaccgtccaggtcaca
cgagcaccgggacaagatgttggcagcatcagcggagactactcaatatctgtaaatgcc
aaaactagacctctggtcaacacaaagtcaagaaatggcaccagaccccaaataagaagg
cccacatttccaaaaccggggctgtcacgaccaaatgcaacaagaattatgtctggaaca
agacatgttgtgcctggtactttgctcaaaaacccaatgccactgaaaatacaagagctg
ttaaaaataaataaaactaaaccagatgtccagattattggtgaccctgtcccagaccat
agtaaagaggaatcaagttctaagaagagtgatagtaaaggtgcagttgtgatttctggg
cataattttgcaccaactggggaaagcagctcagaggaacaatcttacactgactcaaat
atacaaccagatgctggcattactgaggctgaaaatgaaaatcattcagatacctcagca
caaactaagaattttccaaaccaggacaagaaatgtatgaataaaattaaggtgactaac
atcagattaccttttaagaacagaaacaaggggtgcagagaagatgctatagggttggca
ggcagtgcattgtcaagtcttgaggaatcaccttccagtgaagaggatgacgttgattac
acaccagatcctttacacaaactcatagctgagacgtttgacaaattaaatatcacaaca
atttcagtccatctggcaaaaccactgaatctctcgactgatgcagacatagtaagtaga
cagattttaaaggggatgaagccacttcctcccctcttagcttcttcatcctttactgca
aaatcatcttatttatcagccagaaagccatcatcacctgctgctgaaccaccctcatct
ctaacagatacagtttcatcttcactttcatcattaccatcaccttcttcaacaaaacca
tctttgtcaaggtcctctgtatcatcctctgcaactagcttggaagacttagatcaacat
ggtaataatgaactagactttaccaccaactctgcacctactgtgaaaagtgaaatacct
agctcagaagaaagtagcataactgctttccacaacacttatccaaagaagggatttata
cgtcgcccttacccaaacttattacggcctcgaaacaaaacgcatcatcacctaagagtc
cctgtcaattctccacttaatttgggcaacaccccaataaaagaaacaaaggatgtttca
tcttcaccatctttttctatttcaaacaagtcacccgcactggaagcagacacacctggg
aaggatagaaacatagagggagacagaacaaacccaaatgcaacctctgggattgaagaa
agcaaaaaaaagatgctaatagagcgaagactaaaccctcttcgtcgccccacttttaag
ggaacataccaacgtcgcttacatccaaaccttcagaacagaaccaggccagtatcacag
ctcttaaccacacactctaaatctttaaatccaaacacagatacaccgaaagaacagatg
tttcccattgaattggaacagaattctacccatgtttcagaagattctttaccaactaaa
actgtgtctgcaaatcaaggaagtgaaggaactgggacaagaatcccccatacagacatc
tcaaatgggtttcatcgcatcgtaaaggaaagggttttgcctttctctcggcagccaaat
attcttaagcagcaccaacatggcgaatctgcacaaaacaaaacatttatgaacttgaga
caacgccaacatcccaaaggcacaatgcgcagaccattcttgggaagaaagcaaaatgga
ggctcacatgctgttggacaccagtctaatgtaccaggaaaatatagctctgttggcaat
cctgaatcacaaccagagacacaaaatacacaaaggtctaactctggtttccagactaat
cagtcaggagaacaaatgaatggaatgttgggaaaaaattccagaacgcatgaaaagaaa
actacagctaatgaacagatagaagatttaaacaaagaagataataccctgatccaactg
gaagctgcagcaaattccaacatcaaacagagagatgatactggcagagatattggtccc
acagataaaagcaagactgtttctaaacctttgagacgaatcacacttccaaaaagacaa
cccatagatacagctgatatggggcatcaacatggcacccacagaatagctggaaagcaa
gagaaagaacttgcaaaaacaaatcctactgcaaaaactgtttttgacactgaaaacgaa
tggacagaaggctctgcatctgaggtttcttcatcagtggacaagagagaacctctggac
tatgttggagtaaaaaaccagacctctgatggattcactgtggtatgggattcaccagaa
gggaaatacaaaaactttgttcttagtagaacagtggtggagagagacgaaaagccaaaa
cagaaggaagataaacaagaagaggacgaagatcaaattagcaaggaactctcatcagaa
aatggaagcaataaggacaataataaagtacctgaagatgttcgagtcccaaatatccaa
agaggtgcagtgaacaagccagcagatgaggacaaagtcttcaaacaagtgctgcctggt
tctgctcgctccctccagtttgatcacctacctcctcagacggagtacaccataaccttg
cttggaaagggtcctggcattctatccaaactgcacaagcttgtcatcagtacaggacca
gagcctccatccaacatagtgttcagcaaagtgactgaaaactctctgacagtgtcatgg
acaaaacctaaaagtaatgttaatggtttcaaagtcacctacaccaatgcagatgaaggt
gagccagtgtcagtgacagtggactcacaggactccagcctcgatctatctcagctggct
cctggatcctcttatgaagtcaccatcatttctacccttggactggatgagagtgatcca
atcaaagatactgtcatgacacttccagacccgcccactaacctgcaggctgtcaatgtc
aatgacaccacagcattgctcctgtggcgtccagcgttggccactgttgataagtacact
attgtttatggctcgggttcaggatctgaactgaggctcaccgtttctggaaatgcagcc
gagcagcagctcagtggcctggaaggatcaaccacttacactgtcacagtaacaagtcag
cttggaagcctggagagttcaccagctacaaccagctttaccaccaaaagcagctcaagg
tcggataatgatggggcgaacgatcttaaggccagcgatgtgacccctcggagtgctgtc
atgtcatggattccttcttcaaagccggtggaaaaatacgtcctgctttatggtagagaa
ggtgaagaccgaaaggaaatgattgttagcccagatcaaagacaatacaagctgactcga
ctgcatccaggatctctgtacaaagtggagctacagtctataaggggaggtcaactgata
ggcagcagttatactgacttcaccactggcacgctgctgttcccttaccccactgattgc
tctcaggaattgcagaacggtgtcttcacttcagacgtggtggaaattttccctcaaggg
gaacttggccagtcaatgaatgtctactgtgatatggagacagatggcggcggctggacg
gttttccagaggaggaaggacggctcggtgaatttctacaatggctggagggattacgtt
tctgggtttggaaacctgagtggggagttctggcttggccttgacaacattcacaacctg
actaagatgacaaggatgaatctacgagtcgacttacgagacggagacgagcaagtcttc
gctaagtatacaaaattttctgtggccaagaggaactacaaactgagtgtggggggttac
agcggcactgcaggtgactcccttagttaccatgacaactgcgtgttctccaccaaagac
cgagacccagcaccatggatcacccgctgtgctatttcttatcaaggaggctggtggtac
aagaactgccatgaagcaaacctgaacggcctctatggaattgacttcaaacatcagggt
gtgatctggaagtcatggaaaggagaagaccactccatccagttcacagagatgaagatg
agaccagcatccttcatatctacagttagcagagcaaagtga
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integrated database retrieval system
