KEGG   Cyprinodon variegatus (sheepshead minnow): 107097695
Entry
107097695         CDS       T06110                                 
Symbol
smu1
Name
(RefSeq) WD40 repeat-containing protein SMU1
  KO
K13111  WD40 repeat-containing protein SMU1
Organism
cvg  Cyprinodon variegatus (sheepshead minnow)
Brite
KEGG Orthology (KO) [BR:cvg00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:cvg03041]
    107097695 (smu1)
Spliceosome [BR:cvg03041]
 Complex B
  Other components
   Complex B specific factors
    107097695 (smu1)
SSDB
Motif
Pfam: WD40 WD40_WDHD1_1st WD40_Prp19 WD40_CDC20-Fz WDR55 Beta-prop_EML_2 Beta-prop_TEP1_2nd WD40_MABP1-WDR62_2nd Beta-prop_EML EIF3I ANAPC4_WD40 Beta-prop_CAF1B_HIR1 Beta-prop_WDR90_POC16_2nd LisH_TPL Beta-prop_HPS5 NBCH_WD40 WD40_MABP1-WDR62_1st Beta-prop_NUP159_NUP214 Beta-prop_NWD2_C WDR90_beta-prop_4th Beta-prop_TEP1_C Beta-prop_RIG_2nd Beta-prop_WDR75_1st Beta-prop_IFT140_1st Beta-prop_DCAF4 Beta-prop_Nup120_160 Beta-prop_WDR19_1st Beta-prop_Vps41 Ge1_WD40 Beta-prop_SCAP Beta-prop_SPT8 Beta-prop_EIPR1 Beta-prop_IFT122_1st Beta-prop_WDR35_TULP_N Beta-prop_VPS8 Beta-prop_IP5PC_F WD40_RFWD3 RMC1_N Beta-prop_WDR11_2nd WD40_like TFIIIC_delta Mala_s_1-like VPS8_N Beta-prop_IFT122_2nd LisH
Other DBs
NCBI-GeneID: 107097695
NCBI-ProteinID: XP_015250434
Ensembl: ENSCVAG00000011918
LinkDB
Position
Unknown
AA seq 565 aa
MADSHQQTLYEKQDAARAVGGVRPADFTWPQREVLRAEPPQCQSGAAAAAGGNIPNMAVE
LEPTDVIRLIMQYLKENNLYRTLTTLQEETTVSLNTVQSIESFIEDVNRGHWDSVLLAIE
SLKLPDHTLINLYEQVVLELIEMREVGAARSLLRQTDPMIMLKQTQPERYAHLEKLLTFP
YFDPREAYPKGSSKEKRRRAIAEALAREVSVVPPSRLIGLLEQVSYIRRQINPDYLSPEM
TIDTSKEQRVQKESFPTQLYRHIKFGRRSHVECARFSSDGKYLITGSVDGFIEVWNFNTG
KICKDLKYQAQESFMMMDDAVLCMCFSQDADLLATGAQNGKIKVWKIQSGLCVRRFEHAH
NKGVTCLNFSKNNDHILSASSDQTIRIHELRSGKTLKELNGHSSIVKEACFTQDGFHIIS
ASSDGTIKIWNTKSCECLHTFKSQLVTPDVPVNNVIPLPQNPEEFVVCNRSSRLVIMNMR
GQTVKTFCSEQPLRACFICCTVSPHGEWIYCVGEDCVLYCFNYTSGRLEKTLTVHEKDVI
GIAHHPHENLIATYSEDGLLMLWKS
NT seq 1698 nt   +upstreamnt  +downstreamnt
atggccgactctcaccagcaaacactatacgaaaagcaagatgcggcacgtgcggtgggt
ggcgtccgacccgcggatttcacgtggccccagcgagaggttctccgagccgagcctcca
cagtgtcagtccggtgcggcagctgcagcaggaggaaacatcccaaacatggctgtggag
ctggagcccactgatgtgatccgtctaataatgcagtatctcaaggagaacaacctctac
cgcacactcaccaccttacaggaggaaaccacagtttctctcaacacagtgcaaagcatt
gagagctttattgaggatgtaaacaggggccactgggactctgttctgttggctatcgag
tctctcaagttgcccgaccacacgctgattaacctctatgaacaggttgtactggagctc
attgaaatgagggaggtgggtgcagctcgttcgctcctcagacaaaccgacccaatgatc
atgttgaagcagacccagcctgagaggtacgcccatctggagaagctgctgacctttcct
tactttgaccctcgtgaggcatacccaaagggcagcagtaaagagaagcgacgcagagcc
atagctgaggcattagcaagggaggtcagtgttgtccctccatctcgtctcattggactc
ctggaacaagtcagctacattaggcgacagataaatccagattatctctcccctgaaatg
acaatcgacacaagcaaggagcagcgggtgcaaaaagaaagctttccaactcagctctac
cgccacataaagtttggacgacgatcacatgtggaatgtgcccggttctcttctgatggg
aagtatttgatcaccggatcagttgatgggtttattgaggtctggaactttaacactgga
aaaatttgcaaggatctcaaatatcaagcccaagaaagcttcatgatgatggatgatgct
gtgctgtgtatgtgcttcagtcaagatgcagatttattggccacaggagctcagaacggt
aaaataaaggtgtggaagatccaaagtggcctgtgtgtgcgcaggttcgagcatgctcac
aacaaaggggtgacatgtttgaacttttcaaagaacaacgaccacatcctcagtgcttcg
tctgaccaaaccataaggatccatgaactgaggtcaggcaagacgttaaaggagttaaac
ggccattcatcgattgtaaaggaggcatgcttcactcaggatggttttcacatcatcagt
gcctcatctgatggcaccattaagatctggaacacaaaatcgtgtgaatgccttcacacc
tttaaatcccagttagttacaccagatgtcccagtcaacaacgtgattccccttccacaa
aaccctgaggagtttgtggtgtgtaaccgctccagcagattggtcatcatgaacatgcgc
ggccagacagtgaagaccttttgttctgagcagccactgagagcgtgcttcatttgttgc
actgtctcaccccacggagagtggatctactgtgtgggggaggactgtgtgctgtactgc
ttcaactacacatcagggaggctggagaaaacgctgactgtccatgagaaagatgtaatt
ggcatcgctcaccacccacatgagaacctgattgccacctacagcgaggatgggctgtta
atgctgtggaaatcctaa

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