Cyprinodon variegatus (sheepshead minnow): 107098046
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Entry
107098046 CDS
T06110
Symbol
prpf4
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein Prp4
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
cvg
Cyprinodon variegatus (sheepshead minnow)
Pathway
cvg03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cvg00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107098046 (prpf4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cvg03041
]
107098046 (prpf4)
Spliceosome [BR:
cvg03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
107098046 (prpf4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40
WD40_CDC20-Fz
WD40_Prp19
PRP4
EIF3I
Beta-prop_WDR90_POC16_2nd
WD40_WDHD1_1st
Beta-prop_CAF1B_HIR1
Beta-prop_EML_2
WDR55
Beta-prop_TEP1_2nd
NBCH_WD40
Beta-prop_WDR75_1st
Beta-prop_TEP1_C
Beta-prop_EIPR1
WD40_MABP1-WDR62_2nd
WDR90_beta-prop_4th
Beta-prop_SCAP
Beta-prop_EML
WD40_MABP1-WDR62_1st
Motif
Other DBs
NCBI-GeneID:
107098046
NCBI-ProteinID:
XP_015250964
LinkDB
All DBs
Position
Unknown
AA seq
328 aa
AA seq
DB search
MSDEEDMAPAMKKSRVFYGSLEEKERERLTLEKASNMVTGSDALRAGIKAGNINISSGET
MEMEERVSERQQEALAEFERRRRARQITVSTDDAEVKAGLRALGEPITLFGEGPADRRER
LRSVLSVVGPDALKKSRKDEERAKRSHDECHQTWYHEGPSSLRDARLWLARYSLPRAMKR
LEAARAQKEVPEATKTIRQQELHKSLRFSVEPESKPDLVFFLFCSHHLATGSGDNTCKVW
ELRNRKCLYTVPAHQNLLSAVRFQPTDGHFLLTGAYDNTAKVWSHPGWMPLKTLAGHEGK
VMGVDMSPDGKLIATCSYDRTFKLWLSE
NT seq
987 nt
NT seq
+upstream
nt +downstream
nt
atgtcggacgaggaggacatggctccggccatgaagaagagtcgcgttttctacggcagc
ctggaggagaaggagcgagagcgcctcacgctggagaaggcgagcaatatggttacagga
agtgacgccttgagggcgggcatcaaggcgggaaacatcaacatctcatcaggagagacc
atggagatggaggaacgggtcagcgagcggcagcaggaagcactcgccgagtttgagcgg
cgccggcgagcccggcagatcaccgtatccaccgacgacgcggaggttaaagcaggcctc
cgagcgctgggggagccgatcacgttgttcggagagggcccggctgatcgccgtgagagg
ctgcgaagcgttttgtccgtggtcggtccagatgctctgaagaagtccaggaaagacgag
gaaagagccaaaaggtcccatgatgagtgccaccagacatggtaccatgaaggcccctcc
tccctgagagacgctcgcctgtggttggccagatactctctaccacgggcgatgaagcgt
ctcgaagccgcacgtgctcagaaggaggttcctgaggcgacaaagacgatccgccaacag
gagctccacaaatccctgaggttctctgtagaacctgagtctaaaccagaccttgttttt
tttttattttgcagccaccacctggccacaggaagtggtgacaacacctgtaaggtttgg
gagctgcgcaacaggaagtgtctgtacactgtccccgcccaccagaacctgctgtcagcc
gtccgcttccaacccacagacggtcactttctgttgaccggagcttacgacaacacggcg
aaggtctggagccacccgggctggatgccgctgaagacgctggcaggacatgaggggaag
gtgatgggcgtggacatgtcacctgatgggaagctgatcgccacctgctcttacgaccga
accttcaaactctggctgtccgaatga
DBGET
integrated database retrieval system
