Cyprinodon variegatus (sheepshead minnow): 107098178
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Entry
107098178 CDS
T06110
Name
(RefSeq) runt-related transcription factor 1-like isoform X1
KO
K08367
runt-related transcription factor 1
Organism
cvg
Cyprinodon variegatus (sheepshead minnow)
Pathway
cvg04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
cvg00001
]
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
107098178
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cvg03000
]
107098178
Transcription factors [BR:
cvg03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
Runt
107098178
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Runt
RunxI
TagH_SH3-like
Motif
Other DBs
NCBI-GeneID:
107098178
NCBI-ProteinID:
XP_015251176
Ensembl:
ENSCVAG00000017806
LinkDB
All DBs
Position
Unknown
AA seq
435 aa
AA seq
DB search
MNPGALGSSGPLSWAMYLMRKGQAGGGLFDPAPGRRYTPPSTSLASGGKMAEALPLGAQE
AGGGAAAMGKFRLAEHGMAEVISDHPGELVKTDSPNFLCSVLPTHWRCNKTLPIAFKIVT
LGDVPDGTLVTVMAGNDENYSAELRNATAVIKNQVARFNDLRFVGRSGRGKSFTLTITVF
TNPPQVATYQRAIKITVDGPREPRHSRQIQSSPSWSYDQSYPYLGQITTPAVHTAGPLSP
ARSSFGELSSRLSGSDLAAFGDPRMALERPFSSLPSLPESRFSNTRVHYPPTGAAFTYTP
THNPVSNGAISITMATAMASTQTGRYHTYLPPPYPANAPHQAQNGPFQSTSSPYHLYYST
TTGSYQFSMMAGGGANSDSHSPPRIFPPCTTASTGSSLLHPSLPNQNEGVGVEVESSHSS
SPTNMAAAEAVWRPY
NT seq
1308 nt
NT seq
+upstream
nt +downstream
nt
atgaatccaggggccttgggcagctcgggccccctgtcctgggccatgtacctgatgagg
aaaggccaggctggcggcggactcttcgatccggcccccggcaggcgatacacgcccccc
tccacctcgctggcctcgggggggaaaatggcggaggctttgcccctaggagcccaggag
gccggcgggggggcggctgcgatgggtaaattccgtctggcggagcacggcatggctgaa
gtgatttcggatcatccgggcgagctggtgaagaccgacagccccaacttcctctgctcg
gtgctgcccacccactggaggtgcaacaagaccctccccattgccttcaagattgtgacc
ctgggcgacgtccctgatgggaccctggtgacggtgatggcgggaaacgacgagaactac
tccgccgagcttcgtaacgccacggctgtcatcaagaaccaggtggctcgattcaacgac
ctgcgcttcgtcggccgcagcgggagaggaaaaagtttcaccctgaccatcacggtgttc
accaaccctcctcaagtcgccacctaccagagggccatcaagataacggtggacggtccc
agagagccacggcattccagacagatccagtcttctccatcttggagctacgatcagtcg
tatccttacctcggccagatcactactccagctgttcacacagctggtccactttcacct
gctcgctcctcttttggtgagctttcctcaaggctttcaggttcggacctcgcggccttt
ggtgatccgcggatggctttggaacggccgttcagttccctcccctccctgcctgaatcc
cgtttctccaacactcgggtgcactaccctcctacaggagccgcattcacttacactcca
acacacaacccggtctctaacggcgctatcagcatcaccatggccaccgccatggcgtcc
acccaaacaggacggtaccacacctacctgcctccaccttaccctgccaacgcccctcac
caagctcagaacgggccgttccagtccacttcgtccccctatcatctgtactactccacc
accaccggctcgtaccagttctctatgatggccgggggaggggccaacagtgactcgcac
tctccgcctcgtatcttcccgccttgcaccactgcctccacggggtcttctcttctacac
ccttctttgcccaatcagaacgaaggagtaggtgtggaggtggaatccagccacagtagc
tcgccaacaaacatggctgcggctgaagccgtatggagaccgtactga
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