Cyprinodon variegatus (sheepshead minnow): 107098237
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Entry
107098237 CDS
T06110
Symbol
ptch1
Name
(RefSeq) protein patched homolog 1
KO
K06225
patched 1
Organism
cvg
Cyprinodon variegatus (sheepshead minnow)
Pathway
cvg04340
Hedgehog signaling pathway
Brite
KEGG Orthology (KO) [BR:
cvg00001
]
09130 Environmental Information Processing
09132 Signal transduction
04340 Hedgehog signaling pathway
107098237 (ptch1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sterol-sensing
Patched
Motif
Other DBs
NCBI-GeneID:
107098237
NCBI-ProteinID:
XP_015251257
Ensembl:
ENSCVAG00000011833
UniProt:
A0A3Q2CVH7
LinkDB
All DBs
Position
Unknown
AA seq
1553 aa
AA seq
DB search
MASAANAPSEQESREPDRPRITRRNRGDYPRGAPLDLDYLQRPSYCDAGFALEQISEGKA
TGRKAPLWLRAKFQRFLFRLGCYIQKNCGKFLVVGLMIFGAFAVGLRAANLETDVEKLWV
EVGGRVNQELKYTRQKMGEEAMFNPQLMIQTPREEGANILTVEALLQHLESALRASRVHV
YLYNRQWTLEHLCYKSGELVTETNYIMNQIIENLHPCLIITPLDCFWEGAKLHSGMVYLP
GENPKQWTNFDPKEFLEKLRKANIPVDTFEDMLEKAGVGHGYMDRPCLNPADPDCPNTAP
NKNSTKPFSVARILSGGCYGLSRKYMHWQEELIVGGTIKNGSGPLLSAQALQTMFQLMTP
KQMFDHFRDWEEVSHINWNEEKAAAILEAWQRKYSEAVLQSVAANSSQKVLSFTTTTLED
ILKSFSEISVIRVASGYLLMLAYACLTMLRWDCAKSQGAVGLAGVLLVTLSVAAGLGLCS
LLGISFNAATTQVLPFLALGVGVDDVFLLAHAFSETGQNKRIPFEDRTGECLKRTGASVA
LTSISNVTAFFMAALIPIPALRAFSLQAAVVVVFNFAMVLLIFPAILSMDLYRREERRFD
IFCCFYSPCANRVIQIEPQAYLDGADAGRYSPPPSYRTSPPSYHTPPPSYSSHSFAQQTQ
ITMQSTVQLRTEYDPRTQAFYTTAEPRSQISVQPINPVPTRSNHSSDCYNNNNNISGSRN
SRGSNGTRGNAASATFAHHYPAATSSGCMVPPGDSASTTSQTPENNSSTRDLLSQVGDAS
MGLGCLEPPCSRWTLASFAEKHYAPFLLRPTTKVVVIMLFLGLLGISLYGTTQVRDGLEL
TDIVPRETSEYDFIGAQFKFFSFYNMYVVTQRADYTQSQLLLHQLHQRFHSVHYVLKEDN
GTLPRMWLHYFRDWLNGLQKAFDEDWKAGRITVNSYKNGSDDGVLAYKLLVQTGRRDKPI
NKSQLTRQRLVDADGIINPGAFYIYLTAWVSNDPVAYAASQANIRPHPPEWLHDRTDSMP
ETRLSIPAAEPIEYAQFPFYLNGLRETPQFVEAIESVRAICNNYSRQGLPSYPNGYPFLF
WEQYVSLRHWLLLSISVVLACTFLICALFLLNPWTAGIIVLVLSLMTVELFGFMGLMAIK
LSAVPVVILIASVGIGVEFTVHVALAFLTAIGDRHKRAVLALEHMFAPVLDGAFSTLLGV
LMLAGSEFDFIVRYFFAVLAILTVLGVLNGLVLLPVLLSYFGPYPEVSPADGSSRLPTPC
PEAPPRVVHFSVRPHQTSGPATNSGAATDSSDSEYSSNATVSGISQEVQNYNRCMHSGQT
QREEQHYDHWTSRGRVARTEEERRTGSGQRPSPRQQPDPPAYNMPSFVPSQGCDSGLQHG
ITQRNCSRDPRGQQHWQASPPAHPRMDAFETATEAGGHHGSRSYREHSAGHSSYSYHNSQ
PHHHQQHHHHLPHQHVNNATFCQPITTVTASASVTVAVHPAPFSAQGPVSSFPEYTATDS
YCPSGPKEPEPAFQDPHVPLYSHTGTREAKVEAVELQDLELEAAERNCGRRAS
NT seq
4662 nt
NT seq
+upstream
nt +downstream
nt
atggcctcggctgctaatgcgccctccgagcaggaaagcagagagcccgatcggccgagg
attacgcggaggaacaggggggactatccccgcggcgcaccgctggatctggactatctg
cagcggccgagttactgcgatgcgggctttgctctggagcaaatatcggaggggaaggcg
actgggaggaaagcacctctgtggctgagagcgaagttccagagatttttattccggctg
ggctgttacatacaaaagaactgtggaaagtttttggttgtgggccttatgatttttgga
gcttttgccgtgggtttaagggcagctaatctggaaacggacgtagagaaactctgggtg
gaagttggtgggcgtgttaaccaggaactgaagtacacacggcagaagatgggggaggag
gccatgtttaaccctcagctgatgatccagacgccgcgggaggagggagccaacatccta
actgtggaggcccttctgcagcacctggagtcagctctccgagccagcagagttcatgtt
tacctttataatagacaatggacattggaacacttatgctacaaatcaggagaattagtc
acagaaacaaattatatcatgaatcagataatagaaaatcttcatccctgcctcatcatc
acccctttggactgtttttgggaaggagctaaactccactctggaatggtctatctccca
ggtgagaacccaaagcaatggaccaattttgacccaaaggagttcctcgaaaagttacga
aaagcaaacattcctgtggatacctttgaggacatgttggaaaaggcgggcgttgggcac
ggctacatggatagaccttgtcttaaccccgctgaccccgactgccccaacactgcaccc
aataagaactcaactaagcctttcagtgtggcgaggattctgagtggtggttgctatggc
ctgtccaggaagtacatgcactggcaggaggaactcattgtggggggcaccataaagaac
ggcagcggccccctcctcagtgcccaggctttacagaccatgtttcagctgatgacacca
aagcagatgttcgatcactttcgggactgggaagaggtttcccacatcaactggaacgaa
gaaaaggctgcagctatactagaagcctggcagaggaaatactctgaggcagtgctgcaa
agtgtggcggcgaattcatcccagaaagtgttgtccttcaccaccaccaccttggaggac
attctcaagtctttttctgaaatcagtgttatccgtgtggccagtggatacctgctgatg
ctggcctatgcatgtctgactatgctgcggtgggactgtgccaagtcccagggtgccgtg
gggctagctggcgtcctgctggtaacgctgtctgtggcggccggtctgggcctctgttct
ctcctgggaatctccttcaatgctgccaccacgcaggttctcccctttcttgctctggga
gttggtgtggatgacgtcttccttctcgctcatgccttcagtgagaccggacagaataag
aggatcccattcgaggaccgtacgggggagtgtctgaagaggacaggggccagcgtggct
ctcacctccatcagcaacgttacggccttcttcatggctgccctcattcctatcccagcg
cttcgagctttctctttgcaggccgcagtggtagttgtgtttaactttgccatggtgctg
ctcatctttcccgccatcctcagcatggatctttaccgacgagaagaaaggcgttttgac
atcttctgctgcttctacagcccatgtgccaatagagtgatacagatcgagcctcaggcg
tacctggatggagcagatgcaggacgctacagccctccgccgtcgtatcgcacgtccccc
ccttcctatcacacccctcccccaagctacagcagccacagttttgcccagcagacccaa
atcaccatgcagtccacggtgcagctcagaacggagtacgacccccgcacccaagctttc
tacaccacagccgagcccaggtcacagatctcggtgcagccgatcaacccagttccgaca
agaagcaaccacagcagtgactgttacaataacaacaacaacatcagcggcagcaggaac
agtcgtggcagcaacggcaccagaggtaacgccgcctccgccaccttcgcccatcattat
cctgcagccacatccagcggctgcatggttcctccgggtgactcagcctcgacgaccagt
cagacgccagagaacaacagctccacgcgggacctgctgtctcaggtcggagacgcctcc
atgggcctgggttgtcttgagcctccctgttcacgttggaccttggcctctttcgctgag
aagcactatgctccattccttctgcgacccaccaccaaggtggttgtgattatgctattc
ctgggcctgctgggaatcagtctgtacgggaccacccaggtacgggacggcctggagctg
acggacatcgtccccagagagaccagcgagtacgacttcatcggcgctcagttcaagttc
ttctccttctacaatatgtacgtggtgacgcagcgggcggactacacccagagccagctt
ctcttacaccagctccaccagaggttccacagcgttcactacgtgttgaaagaggataac
ggcacgctgccccgcatgtggctgcactacttcagggactggctgaacggactccagaag
gcttttgacgaggactggaaggccggccggatcaccgtcaacagctacaagaatggttct
gatgatggcgtcttggcttacaaactgttggtgcagacaggacgcagggacaagcccatc
aacaagagccagttgactcgacagagactcgtggatgctgatgggatcatcaaccctggg
gctttttacatctacctaaccgcttgggtcagcaatgatcccgtggcgtatgccgcctca
caggccaacatccgtccacaccctcctgagtggctccacgaccggactgactccatgcca
gagacgcgtctaagcattcctgctgccgagcccatcgaatacgcacagttccccttctac
ctcaacgggctccgggagaccccacagtttgtggaggccatcgagagcgtgcgggcaatc
tgcaacaactacagccgacaaggcctgccctcctaccccaacggctaccctttcctcttc
tgggagcagtatgtcagcctgcgccactggcttctcctttccattagtgttgtacttgcc
tgcacctttctgatctgcgctctgttcctgctcaacccgtggaccgctggcatcatagtg
cttgttctctctctcatgactgtggagctttttggcttcatgggactaatggcaatcaag
ctgagtgcggtccctgtcgttattctcatcgcctcagtgggtattggagtggagtttacc
gtccatgtggctctggcattcctgacagccataggggatcgtcacaaacgggcagtcttg
gctctggagcacatgttcgccccggtgctggatggcgccttctccacgttactgggcgtc
ttgatgctggcaggctccgagtttgacttcatcgtcaggtatttttttgcagtgttagcc
atcctgacagttcttggagtactgaatggattggtccttctaccagtattactttcatac
tttggaccttatccagaggtttcaccagctgatggcagtagtcggttacctaccccctgc
ccagaggcccctcctcgagtggtccatttctcggtccgtcctcaccagacttctggacca
gccacaaactctggtgctgccacagactcatcagattcagagtacagctctaatgccaca
gtgtctggaataagccaagaggtgcagaactacaaccgctgcatgcacagtggacaaact
caaagagaggagcagcactatgaccactggaccagcaggggtagagtggcccggacagag
gaggagaggagaacggggtcaggacaacggccttcacccagacagcagcctgacccccct
gcctataatatgccttcatttgttccctctcagggttgtgattctgggctccaacatggc
attactcagcgaaactgcagcagggacccaaggggccagcagcactggcaggcctcgccc
ccggcccatccgcgcatggacgcttttgaaactgctactgaggctgggggccatcatggc
tctcgcagctacagagaacactcagctggccacagtagctactcttaccacaactcgcag
cctcatcatcaccaacaacatcatcaccatctcccgcaccaacacgtcaacaacgctact
ttttgtcagcccatcaccacggtgacggcatcagcatcagtcactgtagccgttcaccct
gccccattctctgcccaaggtccagtttcctccttcccagagtacactgcaacagacagt
tactgcccatcaggtccaaaggagccagagccagctttccaagacccccatgtgcctctg
tactcccacacagggactagagaggccaaggtggaggccgtggagctccaggacttggaa
ttagaggcagctgagaggaactgtggtagacgagctagctga
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integrated database retrieval system
