Cyprinodon variegatus (sheepshead minnow): 107098261
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Entry
107098261 CDS
T06110
Symbol
topbp1
Name
(RefSeq) DNA topoisomerase 2-binding protein 1
KO
K10728
topoisomerase (DNA) II binding protein 1
Organism
cvg
Cyprinodon variegatus (sheepshead minnow)
Pathway
cvg03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cvg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
107098261 (topbp1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cvg03032
]
107098261 (topbp1)
03400 DNA repair and recombination proteins [BR:
cvg03400
]
107098261 (topbp1)
DNA replication proteins [BR:
cvg03032
]
Eukaryotic type
DNA Replication Initiation Factors
Other initiation factors
107098261 (topbp1)
DNA repair and recombination proteins [BR:
cvg03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
107098261 (topbp1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
BRCT
PTCB-BRCT
TopBP1_BRCT0
BRCT_2
RTT107_BRCT_5
LIG3_BRCT
ECT2_BRCT0
BRCT_TopB1_SLF1
Motif
Other DBs
NCBI-GeneID:
107098261
NCBI-ProteinID:
XP_015251316
Ensembl:
ENSCVAG00000009423
UniProt:
A0A3Q2E146
LinkDB
All DBs
Position
Unknown
AA seq
1503 aa
AA seq
DB search
MSTAVKQDFVVKFVEGKGSKPQHAVKAYKAILELQSEKFLKTIQEEEVLQMDRKDSSLFV
FSSFTTPAFLHCKKLGCRIVSPLVVLHCLQQQRCVPKAEKPVYNMAMADITISCTSLDKA
TRAEVMDLVQLMGGRVYCDLNVTVTHLIAGEVGSKKYLVAANLGKPILLPTWVKACWEKS
QDSLFRYTDLPVEDYLCPVLLGCTVCVTGLSGTERKEVQRLCEQHGAKYTGQLKMNECTH
LIVSEPTGQKYECARKWNVYCVSLHWLFDSIEKGFCQDESRYKVQRNASSTSRPHTSTPT
GTSKREDGSSLLGLSNISISTSVPVNDTALTNFTTSRLETPDPIDSVDLTVCPADDVLDG
CKLYLSGFPEKKLEKLRRLVNAAGGLRFNQPSEDLTHVVVREVDQELRKFLSTATHRPHV
VTVQWLLDCFSKGTLLPEEGYLHPECLPPASAAVSVPAHRLARPRSSVGPPVANPSTPRE
PITDEDLLSQYMDDEPTVVDMPPPAPENNDTKSFSVAAEPQPESWTPNHTRGPETDSLLQ
DGLFSGRSFLLVGFDSEAEAQLSILVKEQGGKVLMSRHRAVADFAVVPQLGCAVEATVDE
VVTDTWLAMCVEKESLLPLSSNPLFTPVPVREGYFPLTDCVLSVSQFTGAERESLVELAK
HLGASVQDYFVRLANQKKGMLANTHLVLQTPDGTKYQAAKKWGLPAVTMHWILESARTGK
RAAEERYLVDLPLSPEREEESFVSGSQQPAELHPARSSVEKPLLGPQSSKAVTPFDSGRV
QSKVACSLLNENPKENQNTPKQNQEGGRRKPAQKEPALQLDTPSRFLVRDHLFRPSFNFK
ETLRDLETPDGRSKPVESVETPLTDVINRNRRVALANSSGNKILEMQEVSASPQLAQETK
KEIPQKDSGPLSGAVICVGKKLIKMQSELNAIAASLGADFRWACDDTVTHYIYQGRVGDN
SREYKAVKERGLHVVSQHWLHACAEEERHVPESLYPFTYNPKMSLNLSQIPSSSQRSPPL
TRTQLKEAAESRNNKSELVAAEGSTVGHPVEGEETSETPEKRDTLEMRESLQRQLQEIMS
ATKMTTGRRTSVRLARMGSGFTDSGPNTPEGGRGGRSGSRRTLEALRVSRETMMDVNTEP
SQSEQIVWDDPTAREERAKLADNLQWPGSPSQHSEPLVAAPPPTAENGPHFKDSMTDSEL
VEMAACDVINQHMGQKVRSPPSEDPEEDMLTPKAPSIAFPLPKPLAAPEPQEKEEKKQPP
RFQLSSLSPQERIDYSHLIEELGGVVLDKQSFDPSCSHIIVGSPLRNEKYLAAMAAGKWI
LHRSYLEACRSVGHFIQEDDYEWGSSSILDALPSITSQQRRLALAAMRWRKALQGGSEHG
GAFSGWTVMLNIDQSRESGFRRLLQSGGAKVLPSPSPSLYRETTHLFADFSRLKPGDFRV
DVAEATAQGVTCLKPEYIADYLMQEPAPQIELYCLTAAAPEEAPGTKRKVEADTSRLKRS
RLN
NT seq
4512 nt
NT seq
+upstream
nt +downstream
nt
atgtctacagctgtaaagcaagactttgtggtgaagtttgtggaaggcaaaggctctaaa
ccacagcatgctgtcaaagcatataaggccattctggagctgcagtcagagaagttttta
aaaaccatccaggaggaagaagtgttacagatggataggaaggacagctctctgtttgtt
ttcagtagcttcaccactccagctttcctgcactgcaaaaagcttggttgcagaatagtg
agtccactggtggttttgcactgcctgcagcaacagcgttgtgtcccaaaagcagaaaaa
ccagtgtataatatggcgatggctgatattaccatatcctgcacgagcctggataaagca
actcgggctgaggtgatggatttggtgcagctcatgggtgggcgggtctattgtgacctt
aatgtgactgtcacacacctgattgccggggaggtaggaagcaaaaaatacctggtggca
gccaacctgggaaaaccaattttgctgcctacatgggtcaaagcctgctgggaaaaatca
caagatagccttttcaggtacacagacctgcccgttgaggactacctgtgccccgtcctg
cttggatgcaccgtctgtgtaacaggcctctccggcacggagcgcaaagaggtgcagagg
ctctgtgagcaacacggcgccaaatacaccggccagctcaaaatgaacgagtgcacacac
ctcattgttagtgaaccgacaggtcagaagtatgaatgtgccaggaagtggaacgtgtat
tgtgtgtctttgcactggctgtttgacagcatagagaagggcttctgtcaggatgagagc
aggtacaaggtgcagaggaatgcatcatcaaccagtcggcctcacacttcaactcctacg
ggcaccagcaagagagaagatggatcatctctgttgggcctgagcaacatttccatcagc
actagtgtgccggtaaacgacactgctctcaccaatttcaccaccagtcgattggagacg
cccgatcccatagacagcgtagacctcaccgtgtgccctgctgatgatgtgctggacggc
tgtaagttgtatctaagtggtttccccgagaagaagctggagaagttgcggcggctggtt
aacgctgctggaggcctgcgcttcaaccagcccagtgaggatctcactcatgtagtcgtg
agggaagtggaccaggagctccgcaaatttctgtccacagctactcacaggccacatgtg
gtaacagtgcagtggctgctggactgcttctccaaaggcactctgctcccagaagaggga
tacctccatcctgaatgtcttcctccagcatccgctgctgtgtctgtcccagctcatcgc
ctggccagaccgcggtcatcagtcggcccacccgtcgccaaccccagcactcccagggaa
ccaataacagacgaggatcttctttcacaatacatggacgatgaacctacagtggtcgat
atgccaccaccagcaccagagaataacgacacaaagtccttcagtgtagctgcagagcct
caacctgaatcctggacccccaaccacactagaggaccagagacagactcgctgctgcag
gacggcctgttttctgggagatctttcctgcttgttggctttgattcagaggcagaggct
cagctctcgattctggtgaaggagcaaggagggaaggtgttgatgagccgccatcgagcg
gtagcagattttgctgtggtccctcagctgggatgtgcagtggaggccaccgtggatgag
gtggtcactgatacatggctggccatgtgtgtggagaaggagtccctcctgccgctgtcc
tctaaccctttgttcacccctgttcctgtgagggagggatattttcctctcacagactgc
gtcctctcagtcagtcagtttactggggcagagagggagtctctggtagagctggccaag
catcttggagccagtgtccaggattactttgtgcgcctggccaaccagaagaaaggcatg
ctggccaacactcacctggtgctacagactcctgacggaacaaagtaccaggcagctaag
aagtgggggcttcctgctgtcaccatgcactggatactggagtctgctcggacggggaag
agggcggcggaggagagatatttggtggatctccccttgtctccagagagagaagaagag
agctttgtcagtggatcccagcaaccagctgagctccacccagctcgatcttctgttgag
aagccgttgctgggtcctcagagcagcaaagcagtcaccccgtttgattctggccgcgtt
cagagcaaagtggcttgttctttgttgaatgagaatcccaaagaaaaccagaacactccg
aaacagaaccaggagggcggcagaaggaaaccagcccagaaggaacctgccctgcagctg
gacaccccctctcgattcctggtcagagaccatctcttcaggccgtcttttaacttcaag
gagacgctgagagatctggagacgcctgatggaagatcgaagcctgtagaaagcgtggag
actccactaactgatgtaatcaacaggaaccggagagttgctctggccaacagctcaggc
aacaagatcttagagatgcaggaggtctctgccagcccccagctggcacaggaaacaaaa
aaggagatcccacagaaagattctggacccctgagtggtgctgtgatctgtgtggggaag
aaactgatcaaaatgcaaagtgagctgaatgccatcgctgcctcgcttggagctgacttc
aggtgggcctgcgacgatacagtgacccactacatctaccagggtcgtgttggggataac
tcacgtgaatacaaagcagtgaaggagaggggactgcatgtggtctctcagcactggctg
cacgcctgtgctgaggaggagaggcacgtcccagagtctctgtatcctttcacctataac
ccaaagatgagtctgaacctgagccagatccccagcagctcccagaggtccccccctctc
acccgaacacaactcaaagaagcagctgaatccaggaacaacaagtctgagctagtcgct
gcagagggaagcacagtcggacatccggttgaaggagaagagacaagtgaaaccccagag
aaaagagacactttggaaatgagagagagcctgcaaagacagcttcaggagatcatgtcg
gccaccaagatgacaacgggaaggcggacttctgtcagactggccaggatgggatcaggg
ttcactgactcgggtccaaacacgcctgaagggggccggggtggacgcagtgggagcaga
cggaccctggaagctctgagggtttctagagaaacgatgatggacgtaaacactgagcct
tcccagagtgagcagatcgtttgggatgatcctacagccagggaggagagagccaagctg
gctgataatctacagtggcctgggagtccgtctcagcattcagagcccctcgtggcggcc
ccccctcccactgcagaaaatggaccacacttcaaggactccatgacagactctgagctg
gtggagatggctgcttgtgatgttataaaccagcatatgggtcagaaggtcagatcgcct
ccatcagaggatccagaggaggacatgcttactcctaaagctcccagcattgccttccct
ctccccaaaccactggcagcaccagagccacaggaaaaggaggagaaaaaacagccgccg
aggtttcagctgtcatccctcagccctcaggagcgcattgattacagtcatctcatagag
gagcttgggggcgttgtcctggacaagcagtcttttgaccccagctgctcccacatcatc
gtaggaagtccactgcgtaacgagaagtatctagccgccatggcagccggcaaatggatc
ctgcatcgctcgtacctggaggcctgtcgctcagtgggtcacttcattcaggaggacgac
tatgaatggggcagcagctcaatcctggatgctctgccctccatcacctctcagcagagg
aggttggccttagctgctatgcgctggagaaaagctctgcagggaggctcagaacacggc
ggagctttcagtggctggactgtgatgctgaacatcgaccagagcagagagtcaggcttc
aggcggttactgcagtctggtggagccaaggtgctgcccagtccctccccatcgctgtac
agagagaccacacacctgtttgcagatttcagtcgtctcaaacctggagacttcagagtg
gatgtagctgaggccacagcacaaggagtgacatgcttaaaaccagagtacattgcagat
tacctcatgcaggaaccagcaccacagatcgagctgtactgtctgactgcagctgctcct
gaagaagctcctggcactaaacggaaagtagaagcagacacttccaggctgaagaggagc
cgtctgaactaa
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integrated database retrieval system
