Cyprinodon variegatus (sheepshead minnow): 107098780
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Entry
107098780 CDS
T06110
Symbol
scaf8
Name
(RefSeq) protein SCAF8 isoform X1
KO
K13191
RNA-binding protein 16
Organism
cvg
Cyprinodon variegatus (sheepshead minnow)
Brite
KEGG Orthology (KO) [BR:
cvg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cvg03021
]
107098780 (scaf8)
03041 Spliceosome [BR:
cvg03041
]
107098780 (scaf8)
Transcription machinery [BR:
cvg03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
107098780 (scaf8)
Spliceosome [BR:
cvg03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
107098780 (scaf8)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CID
RRM_1
Transformer
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
107098780
NCBI-ProteinID:
XP_015252113
Ensembl:
ENSCVAG00000000925
LinkDB
All DBs
Position
Unknown
AA seq
1354 aa
AA seq
DB search
MEAVKAFNNELYTLTEYKPPISKAKMTQITKSGIKAIKFYKHVVQSVEKFIQKCKPEYKV
PGLYVIDSIVRQSRHQFGTEKDVFAPRFSKNIITTFQHLYRCPPDDKSKIVRVLNLWQKN
AVFKSDIVQPLLDMAAGIPPPSATPVLPSSAAPINNTTPGTPATPATPANIVQGLPDWAS
QITNTDTVAAVAQILQSPQGQQLQQLVQSLQMQQQKPQPSLLQALDAGLVVQLQALTAQL
TAATANSLNPLEQRVSSFNKKLLGSFDFGNNSERSEESKKDSSSQLPMVSESMNSSLFHQ
LAEQLQQQNLEQFQKQLLEHQQKAMSIEGQESMYGQENSVATAQTSAQQHLPEPENKMDD
SMDNQQQDMDLDDGPEGMEEELFEADEKKTLSTRSRTRSRSRSRSPKRRRSRSRSGSRKR
KHRKRSRSRSRDRKRKSSRSYSSERRAREREKERQKKGLPPIRSKTLSVCSTTLWVGQVD
KKATQQDLTNLFEEFGQIESINMIPPRGCAYICMVHRQDAYRALQKLSTGSFKIGSKIIK
IAWALNKGVKQEYKQFWDADLGVTYIPWEKVKLDDLDDFPEGGIIDQETVNDEWESTKTS
ELSKEGTSQVVSSETTVVSNPQTETYNQQVTMMPVQLPVAQAVPGAMGLVPPTFPVTMSI
PPPGYGPPPPFLRPSFNASHPPPGYLQAPHTAGMASVTTSLVQPSVASNQDGVMPPTSTI
PGSFLPSGIPGSGVFNPVGVQTQQANSEKIPPPAEGMDAAAELTLQGMQNAVRSGMGLLG
MHPSASLPHPLHQTGLSAPRMPGLLPMDVRPNLLQPGAAARFPLLMQQGPPQQPTGLLDN
SLHPRPRPPFPQMDPFNRAPNLSNENVSKTEDESSSGADEGKDQDYRFPPMEKPSTGLLP
TPPPEHREPLGGGGGAPGGGRPPLLQTPGAQPQRSSLAGRLQALAGFTPDNRWNQSKGDF
DERDGMRGGPQPPGGPKRFQDERPPPGQNFPNRFDNRPTGPNSGPVGGPQPWNRGGGPKP
PFNSENHKDLDDRRRPWERQRDRDERDFDFRRDMNGNRHNRERERERERDRERERGREAP
RESERDRDHDKEKERGGWTPLLPLPAPLLPTPPLNPNRVLNQGKPLAPLKLNPQFPAVFQ
PSPLPQGQNKPPLLRSPPTPQVQIRSPPPSQNLPPDSETHGEAPAETPQAKSPPSACSHQ
QSPDSKTANTLPEPPAQSETPPPMQSPPESVAQVTTETAASPDTKKQHDDSPVGFSQADD
EPREDKEEGPERVPTPEPQWANGPDQDSVNVTEPTPEASPEPRSTPGSAQPESETEPRHE
RLSSPKDPNNEQSEPQEDAPSQPVVDTVTDTEGT
NT seq
4065 nt
NT seq
+upstream
nt +downstream
nt
atggaggccgtcaaagccttcaacaacgagctgtacacattgactgagtacaagccaccc
atctctaaggccaagatgactcagatcaccaagtcaggaatcaaggccataaaattctac
aagcatgtagtccagagtgtagagaagttcattcagaagtgcaaaccagagtacaaggtc
cctgggctttatgtcatcgactccattgtcagacagtcccgccaccagtttgggacagag
aaagatgtttttgccccacgcttcagcaagaacatcattacaacgttccagcacctttat
cgctgccccccagatgacaagagcaagatagtgcgcgttctgaatctgtggcagaaaaat
gcggtgtttaagagcgacatcgtccagcctctgctggacatggctgcagggattcctcct
cccagtgctactcctgtcctgcccagcagtgctgcaccgatcaataacactacacccgga
accccagctacacccgccactccagcaaatatagtccagggtctgcctgactgggcctcc
cagatcacaaacactgatactgtcgctgctgttgcacaaatactgcagagtccccaggga
caacagcttcagcagctggtccagagtctgcagatgcagcagcagaagccccagccatca
ctgctgcaggccttggatgctggcctggtggtacaattacaagctctaacagctcagcta
actgctgccacagccaacagcctcaacccccttgagcaaagggtctcctcttttaataag
aaactgttgggttcttttgactttggaaacaattcagaacgcagtgaggaatctaaaaag
gactcatcttctcagctgcccatggtttctgaatccatgaacagctcactcttccatcaa
ctggctgaacaactccaacaacaaaacctggagcagtttcagaagcagctgctggagcat
caacagaaggccatgagcatagaggggcaggaatccatgtatgggcaggagaactctgtg
gcgacggctcagaccagcgctcagcaacaccttcctgagccagagaataagatggacgac
tccatggacaaccaacagcaggatatggatctagatgatggtcctgagggaatggaggag
gagctgtttgaagcagacgagaagaagaccttaagcacacgttccagaacacggtctagg
tcacgctccagatctcccaaacgtaggagatccaggtcccgctccggctcccggaaacgt
aaacatcgcaagcgctcacgctcccgatccagagatcgaaagaggaagtcatctcggtct
tactccagtgaaagacgcgcccgggaacgagagaaggaacggcagaagaaagggttacca
cccatacggtccaagactcttagtgtgtgcagcacgacgttgtgggtgggacaggtggat
aaaaaggccacacagcaagatctcaccaatctgtttgaagagtttggccaaattgagtcc
atcaatatgatccctccacgcggatgcgcctacatctgtatggttcacagacaggatgcg
taccgcgcccttcagaaactcagcactggctccttcaagatcggctccaagatcatcaag
attgcgtgggctctgaacaaaggtgtaaagcaagagtacaagcagttttgggatgcagac
ttgggcgtcacctacataccatgggagaaggtcaagctggatgaccttgatgactttcct
gaagggggaataattgatcaagaaactgtcaatgatgagtgggaatccaccaagacttct
gaactatccaaggaaggaacaagtcaggtggttagcagtgaaaccacagtggtatctaat
ccccaaaccgagacctacaaccagcaggttactatgatgcctgtacagctaccagtggcc
caagcagttcctggtgccatgggtttggtgcctcctacgtttccggtaacgatgagcata
cctcctccaggctacggaccaccgccaccatttttaagacccagcttcaatgcctctcat
cccccaccagggtatttgcaggctccacatacagcggggatggcctctgttactacatct
ctagtgcagccttctgtggcctccaaccaggatggtgtgatgcctccaactagcaccatc
cctggcagcttcctgccctcaggaataccaggaagtggtgtttttaatcctgtgggagtc
caaactcagcaggccaacagtgagaaaattcccccgcctgcagagggaatggacgcggca
gcagagctcacactacaaggcatgcagaacgcggtccgcagtggaatgggtctccttgga
atgcatccctcagcttcactaccccatccactgcatcaaacaggtctgagtgcaccaagg
atgccgggcttgttgcccatggatgtacgacccaacctccttcagcctggggctgccgcc
cgtttcccgctcctcatgcagcagggccctcctcagcagcccactggcctccttgataac
tcccttcatccccgtcccaggccccccttccctcagatggacccgtttaacagagccccc
aacctctccaatgaaaatgtctccaaaactgaagatgagtcctcctctggtgctgatgag
ggcaaagatcaagactaccgcttccctcctatggaaaagcccagcacaggccttctgcct
acccctccgccagagcatagggagccacttggaggaggtgggggggctccaggaggaggg
agacctccattactccaaacccccggagctcaacctcaaagatccagcttagcgggccgt
ttgcaggcgctggcaggatttactcctgataaccgctggaaccaaagcaaaggggacttt
gacgagcgagatggcatgcgtggaggaccacagcccccaggtggtccgaaacgctttcag
gatgagcgccccccacccgggcagaacttccctaaccgcttcgataaccgtccgacgggt
ccaaacagtggtccagttgggggcccccaaccctggaaccgcggaggcggacccaaacct
cctttcaatagtgaaaatcataaagatctagatgaccgaagacgtccgtgggaaagacag
agagacagggatgaacgagatttcgacttcaggagagacatgaacggtaatcgccacaac
cgcgagagagagcgggaaagggagcgggatagagagcgggaacgaggccgagaagccccc
agggagtccgaacgtgacagagaccatgacaaggagaaagaacgtggaggctggacgcct
cttctgccgctacctgcaccacttcttcctactcctcctctgaatcccaatagggtgctt
aaccaagggaaacctcttgctcctcttaaattaaacccccagtttccagcagttttccag
ccatctcctttgccccaaggtcagaacaaacctcctcttctgaggagtccgccgaccccc
caggttcagatcaggtctcctcctccgtcacagaacctgccgcctgattctgagacccac
ggggaagctcctgctgaaacacctcaggcaaagtcgcccccttctgcctgctcacaccaa
cagtcacctgacagcaagactgcaaacacattaccagaaccccctgctcagtcagaaacc
cccccaccaatgcagtcaccacctgagtccgtcgcccaggtgaccacagagaccgctgca
tccccagacactaagaagcaacacgacgactcacctgtgggcttctcacaggctgacgac
gagccacgagaggataaggaggaggggccagaaagggtccccacacctgagccccagtgg
gcgaatggaccagatcaggacagtgtcaatgtgactgagcccaccccagaggcctcccca
gagcccaggtccaccccaggctctgcccagcctgaaagtgaaacggagccacggcatgag
cgcctgtcgtctcctaaggacccaaacaatgaacagagtgagccccaggaggacgctccg
agtcagccagtggtagacactgtcacagacactgaggggacataa
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