Cyprinodon variegatus (sheepshead minnow): 107098831
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Entry
107098831 CDS
T06110
Symbol
taf5l
Name
(RefSeq) TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
cvg
Cyprinodon variegatus (sheepshead minnow)
Pathway
cvg03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
cvg00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
107098831 (taf5l)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cvg03021
]
107098831 (taf5l)
03036 Chromosome and associated proteins [BR:
cvg03036
]
107098831 (taf5l)
Transcription machinery [BR:
cvg03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
107098831 (taf5l)
Coactivators
SAGA/TFTC/STAGA complex
107098831 (taf5l)
Chromosome and associated proteins [BR:
cvg03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
107098831 (taf5l)
STAGA complex
107098831 (taf5l)
TFTC complex
107098831 (taf5l)
SAGA complex
107098831 (taf5l)
SLIK complex
107098831 (taf5l)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_CAF1B_HIR1
WD40_CDC20-Fz
Beta-prop_EML_2
TFIID_NTD2
EIF3I
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
WDR55
Beta-prop_EML
WD40_MABP1-WDR62_1st
Beta-prop_WDR75_1st
Beta-prop_TEP1_C
WDR90_beta-prop_4th
Beta-prop_IFT122_1st
ANAPC4_WD40
Beta-prop_SCAP
NBCH_WD40
Beta-prop_RIG_2nd
Beta-prop_IFT140_1st
Beta-prop_DCAF4
Beta-prop_HPS5
Beta-prop_EIPR1
Beta-prop_SPT8
Beta-prop_Vps41
Beta-prop_WDR19_1st
WD40_like
PROPPIN
PEP5_VPS11_N
WD_LRWD1
DUF7165
Beta-prop_IP5PC_F
Cytochrom_D1
Lysis_col
Beta-prop_WDR35_TULP_N
Beta-prop_ELP1_1st
Motif
Other DBs
NCBI-GeneID:
107098831
NCBI-ProteinID:
XP_015252174
Ensembl:
ENSCVAG00000013917
UniProt:
A0A3Q2E5T9
LinkDB
All DBs
Position
Unknown
AA seq
599 aa
AA seq
DB search
MKRVRAEQIQNAVAQYLKRRQYVDTDGSLKGAKLFQSTEELAAGLTVQTESGCTNVVSAA
PCQADPQQYEIQFSRLRSFLSEAEISYAQEVSSLLYPLFVYLHLDMVHCGLKGAVDGFYV
RFHDAFLHDVEQRLVVEQLRHVVAAQDVAANPKLRSFLEHKYVVHLTEPAYSYLLRYLQS
DDNSALCRVLSTHLQVEVTASRRTEYQLYGAAGGSMATPISVSSSWLGGAEGGEGVEVPA
GIPQNEVALLALQDCIKKVREGPPSLTTICFYAFHHTEQMLNAAEVSPDSRLLAAGFDSS
AVKLWSLRARKLKARPHQADVSCIHLACDVREEEGDEEEGCGSEIKMLRGHSGPVYRTAF
LTDSSGLLSCSEDTTIRYWDLGSFTNTALYQGHAYPVWDVDVSPCSLYFASGSHDRTARL
WTFSRTYPLRLYVGHLSDVDCVKFHPNSNYLATGSTDKTVRLWSTQQGQSVRLFTGHRGT
VLSLAFSPNGKYLASAGEDQRVKLWDLAAGTLFKDLRGHTDSITSLSFSPDSSLVVSSSI
DNSVRVWDIRNSHGGTPADGSSSELVGLYVGNTSNVLNVQFMACNLLLVTGTALEKAEQ
NT seq
1800 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgggttcgggctgagcagatccagaatgctgtggctcagtacctgaagaggagg
cagtatgtggacactgacggctccctgaaaggagccaagctcttccagtccacagaggag
ttggcagccggcctgacagtgcagacggagtccggctgtaccaatgtggtctctgctgct
ccctgccaggcggacccccagcagtatgagatccagttctccaggctgcgctcctttctc
tcagaagcagaaatctcctacgcccaagaggtcagcagcctcctgtatcccctcttcgtt
tatcttcaccttgacatggtgcactgtggcctgaagggggcagtagatggtttttacgtc
cgttttcacgacgcttttcttcacgacgtagagcagcggttggtggtagagcagctccgt
cacgttgtggctgcgcaggatgtagcagccaaccccaagctgaggtcctttctggagcac
aagtatgtggtgcacctgacggagccagcgtacagctacctgctgcgctacctgcagagc
gacgacaacagcgccctgtgcagggtcctcagcacccatctacaggtggaggtcaccgcc
tccagaagaacagagtaccagctgtacggagccgccggaggctccatggccacgcccatc
tcggtgtcgtcctcctggcttggcggagcagagggcggggagggggtggaggtccctgca
gggatcccgcagaatgaggtggcgctgctggcgctgcaggactgcataaagaaggtccgg
gaaggcccgccctccctcaccaccatctgcttctacgccttccaccacacggagcagatg
ctgaacgccgccgaggtttctccggacagccggctgctggccgccggcttcgacagctcc
gccgtgaagctgtggagcctccgggccaggaagctgaaggccagaccgcaccaggccgac
gtctcctgcatccacctggcctgcgacgtgagagaggaagagggggacgaggaggaaggc
tgcggcagtgagattaaaatgctccgcggtcacagtggccccgtgtatcgcaccgccttc
ctgactgacagctccggcctgctctcctgctcagaggacaccaccatccgatactgggac
ctgggcagcttcaccaacacggcgctgtaccagggccacgcctacccggtgtgggacgtg
gacgtcagcccctgcagcctttatttcgccagcggctctcatgaccgcaccgcccgcctc
tggacgttctcccgcacctacccgctgaggctctacgtggggcacctctccgacgtcgac
tgcgtcaagttccaccccaactccaactacctggctaccggttcaacggacaagacggtc
cggctgtggagcacccagcaggggcagtcggtccggctcttcaccggccaccgcggcacc
gtgctgtcgctcgccttctcacccaacgggaagtacctggcctccgctggagaggaccag
cgcgtgaagctctgggacctggcagcagggactttgtttaaagacctgcgaggacacacg
gacagcatcaccagcctgtccttcagccccgacagcagcttggtggtgtcctcctctata
gacaactctgtccgggtgtgggatatccggaacagccacggcgggacgcctgccgacggc
tcgtccagtgagctggtggggctgtacgtgggaaacaccagcaacgtccttaatgtccag
ttcatggcctgcaacctgctgctggtcacaggaacggctctggagaaggctgagcagtag
DBGET
integrated database retrieval system
