Cyprinodon variegatus (sheepshead minnow): 107098972
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Entry
107098972 CDS
T06110
Symbol
vps8
Name
(RefSeq) vacuolar protein sorting-associated protein 8 homolog
KO
K20178
vacuolar protein sorting-associated protein 8
Organism
cvg
Cyprinodon variegatus (sheepshead minnow)
Pathway
cvg04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
cvg00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
107098972 (vps8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cvg04131
]
107098972 (vps8)
Membrane trafficking [BR:
cvg04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
107098972 (vps8)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Vps8
Clathrin
zf-RING_UBOX
zf-RING_11
zf-RING_5
zf-RING_2
ANAPC4_WD40
zf-C3H2C3
SLX1_C
PHD_4
zf-rbx1
Motif
Other DBs
NCBI-GeneID:
107098972
NCBI-ProteinID:
XP_015252374
Ensembl:
ENSCVAG00000010354
LinkDB
All DBs
Position
Unknown
AA seq
1404 aa
AA seq
DB search
MSQSPDSRSLLSASSQLNLMEVESIDDKEFDIPQVDTPPTLESILSQMEEEEEPFVLEDT
CILNTDNMDAQSCDTSSLASSDSGDPAHLKRKRRPLDQSAAVHGSVLRLSLLKGISAQMV
AASDKVDAGLPTAIAMSGVIAVGTSHGLALVFGKDTNQALRLCLGSKTTGAEFGAVSALS
INHDCSRLLCGFAKGQITMWDLANGKLLRTITDAHPPGTAILHVKFTDDPTLAVCNDSGG
SVFELTFRRVMGMRSCDSRCLFSGSKGEVCCVEPLRTPPDLKDHPITCYSLLAMASLTKI
LVIGLKPSLNVWMTLPYTKSDPTSVPQLAWQFVPVQKTVNPVLAFCKGDTVHFLLVKKEE
SGTIHVIKQRQLHLSCDIISLNWINSCTLVLLDSHEKLHVVDRPSQEVLETLDLEQVQLV
YNSRHFKSLATGGNVSQALALVGEKACYQSLSSHAGQIVCLGTKSAHIMSLRSWKERLDC
FLKQEHFPEALSLAWSFHEGTAKAVVGLHSDSQKRKAAISDKMVELLLQFAEFALKKCPD
QGKVQVMEQHFQDMVPVLVDYCLLLHKADLLFNQLYSRLLENTVAKGVFLESLESYIVAN
RLGHITTPVMKDLLAHYHDNGMMDSLERCIVHLDVTSLDIQQVVQVCWDNQLYDAVIYIF
NRGMNDYITPMEKLFSVIGPRVKEGRSLTGDDVVMGNKLLVYISCCLAGRAYPIGDIPED
LVVQVKNQVFEFLIRLHSGDSSQKEEVFPFIHTLLHFDTREFLNVLAMVREQFGHSKAVH
HQNRIFFFILKVMVDNPDFTPSQVGGLFTFLARQLAKPNNTLFVNRNLFDQVLEFLCCPD
DDSRHTERQQVLLELLQVGGVVQFNEERLFTLAEKAKFYQICEFLYEKKHLYERIVDCYL
RDPLRQSEIFSYIHNLMSMPGYSSEEKLKVKQKVLQHMQELVSLCPAKLADLVTWHFADE
VQSIISSLQDDQLLFQFLRCLLEPQEGSQPASLLPLDPELYELLLDLMCRFESQELLKFL
QTSQHYRLDEAIQITQKYGCNEAKAYLLEKKGDIHGAFACLLQTLKERLHVLSAEVSRDG
EGAADRRDDKELDLTLMNVRNSLNQMILFCHRNCQNLDQEQGKDLWFPLLDAMMASQKEV
MGLKDKHVSDGLKEMTLKVLNCMSSFISLPAIIQHILQDPVYGRGKLAEIQGLILGMLDT
FTYEQTLLETTTSLLNHDLHWSLAHLRSVVTRGLHPRQDCCNICLQHYKRKQDATEEIVV
FSCGHLYHLQCLQQKDCGRGQSSELPQPWRCYKCSSSHGGRGGASVEPSRSRSASLAQTR
FSSGHQQKGGEAHGKKVLAAVTLDVQQELSWDQLRGLYRGPSRLSILSEVSHGQGGERPG
FLVPAQSGAENFHLKLAPPPLFEE
NT seq
4215 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcagtctccagacagcagaagccttttgtccgcttcttcgcaactcaacctcatg
gaagtagaatcgattgacgataaggagtttgacatcccccaagtggacacgcctcccacc
ctggagagcatcctcagtcagatggaggaagaggaggagccgtttgttttggaggacacg
tgcattttaaacacggacaacatggatgctcagtcctgtgatacgtcctccttggccagc
tcggacagcggagaccctgcgcacctcaaacgaaagaggaggcctctggatcagagcgcg
gccgtccacggctcggtccttcgtctcagcctgctgaagggcatctctgcccagatggtc
gctgcttcagacaaagtggacgccgggcttcccaccgccatagccatgtctggagttatc
gctgtaggaacatctcatggtctcgccttggtattcggaaaagataccaaccaggctctg
cggctgtgtctgggcagcaagacgacaggagcagagttcggcgccgtgtccgctctcagc
atcaaccacgactgctctcgtcttctgtgtggatttgctaaaggccagattaccatgtgg
gatctggctaacgggaagcttctgaggaccatcacagacgcccatcctccaggaactgcc
atactgcatgtgaagttcacagacgacccgactctggcggtctgcaacgacagcggaggc
tctgtgtttgagctgacattcaggcgggtcatggggatgcgctcctgtgactcccggtgt
ctgttcagcggctctaaaggagaagtgtgctgcgtggaacctctgcggacgcctccggac
ctcaaagaccatcccatcacctgctactctctgctcgccatggcctccctcaccaagatc
ctggtgattggactgaagcccagcctgaacgtctggatgacgctgccctacaccaagtcg
gacccgaccagtgtcccccagctggcctggcagtttgttcccgtccagaagacggtcaac
cccgtccttgccttctgtaaaggagacaccgtccacttcctcctggtgaagaaggaggag
agcggcaccatccatgtgatcaaacaaagacaactccacctgagctgtgacatcatcagt
ctgaactggatcaacagctgcaccttggtgctgctggacagccacgagaagctgcacgtc
gtggaccggccctcgcaggaggttctggagactctggatctggagcaggtgcagctggtc
tacaacagtcgacacttcaaatcgttggcgaccggagggaacgtctctcaggctctggcg
ctggttggagaaaaagcctgctaccagtccctgtccagccacgcgggccagatcgtctgt
ctgggcaccaagtcggctcacattatgtccctgaggagctggaaggagcgcctggactgc
ttcctgaagcaggagcatttccctgaggctctgtctctggcctggtccttccatgagggc
actgccaaggctgtggtaggcctccattcagactcacagaagaggaaggcagcaatcagc
gacaagatggtagagcttctcctccagtttgcagagttcgctctgaagaagtgtccggat
cagggcaaagtccaggtcatggagcagcacttccaggacatggtgccggttttggtggat
tactgcctcctgctgcacaaggcagacctgctgttcaaccagctctactcgcgcctgctg
gagaacacggtggctaagggagtcttcctggagtccctggagtcctacatcgtggccaac
cggctcggtcacatcaccacgcctgttatgaaggacctcctagcccactaccatgataac
ggcatgatggacagcctggagagatgcatcgtccacctggacgtgaccagcctggacata
cagcaggtggtccaggtgtgttgggacaaccagctctatgatgctgtgatctatattttc
aaccgaggaatgaacgactacatcactccaatggagaaactcttttcagtgattggtcct
agagtcaaagaggggaggagcctaacaggcgatgatgtggtgatggggaataaactactg
gtttacatcagctgctgtctggctggaagggcgtatccaatcggagacatccctgaagat
ctggttgttcaggtgaagaaccaggtgtttgagttcctgattcgtcttcattcaggcgac
tcttctcagaaggaggaggttttcccgtttattcacactctcctccattttgatactcgg
gaatttctcaatgtcttggctatggtgagggaacaatttgggcatagcaaagctgtgcat
caccaaaacagaatctttttttttatattgaaggtgatggtggacaaccctgacttcact
ccctcccaggttggcggtctcttcaccttcttggctcgccagctggccaaaccaaacaac
acactgtttgtgaacaggaaccttttcgatcaggtcctggagttcctctgttgtccagat
gatgattctcgtcacactgaaaggcagcaggttctgctggagctgctgcaggttgggggg
gtggtccagttcaatgaagaaagactcttcactcttgcagagaaagccaagttctaccag
atctgtgagttcctgtatgagaagaagcatctgtatgagcgcatcgtggactgctatctg
agagaccctctgcgtcagtctgaaatcttcagctacatccacaacctgatgtccatgcca
ggctacagctctgaagagaagctaaaggtcaaacagaaggtgctgcagcacatgcaggag
ttggttagcctgtgtcctgctaagttagccgacctggtgacgtggcacttcgccgatgag
gtgcaatccatcatctcttcgctgcaggacgaccagctgctcttccagtttctccgctgc
cttctggagcctcaggaagggtctcagccggcatcccttctgcctcttgaccctgaactc
tatgagcttctgctggacctgatgtgccggtttgaatcccaagagcttctgaagttcctg
caaacatctcagcattacagactagacgaggctatacagataacgcagaagtacggctgt
aatgaagccaaggcctacctcctggagaagaagggagatatccatggagcgtttgcctgc
ttgctgcagaccctgaaggaaagactgcatgtcctgtcagcagaggtgagccgtgacgga
gaaggagcagctgacagacgagatgataaggagctggatttaacactgatgaatgtcagg
aattcattgaaccaaatgattctcttctgtcatcggaactgtcagaacctggaccaagag
caaggaaaggacctgtggttcccactgctggatgccatgatggcctcacagaaggaagtg
atggggctcaaggataaacacgtctcagatggtctgaaggagatgaccctgaaggtcctg
aactgtatgagcagctttatttccctccccgccatcattcagcacatactgcaggatccc
gtttatggacgaggaaagctggcggagattcaggggctcattctggggatgttggacacc
tttacctatgaacagacattgctggaaacaacaacaagtctgctgaaccacgacctccac
tggtccttggctcatctccgctctgtcgtcaccagagggcttcatccacgacaagactgc
tgcaacatctgcctgcagcactacaagaggaagcaggatgcgacggaggagatcgttgtg
ttcagctgtggccacctgtaccacctgcagtgcctccagcagaaagactgtgggcggggc
cagagctccgagctgccacagccttggaggtgctacaagtgttcttccagccatggagga
aggggcggggcttctgttgaacccagtaggagccgcagcgcgtcactcgcccagactcgt
ttctcatcaggacatcagcagaaaggaggcgaggcccacgggaagaaggtattggctgca
gtgacgctggatgtgcagcaggagctgtcctgggatcagctccggggtttataccgagga
ccatccaggctgtccatcctgtcagaggtgtcacatggccaaggaggcgagaggccgggc
ttcctggttccggcccaatcaggggcggagaatttccacctcaaactggctcctcctcct
ctgtttgaagagtag
DBGET
integrated database retrieval system
