Cyprinodon variegatus (sheepshead minnow): 107098987
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Entry
107098987 CDS
T06110
Symbol
ddx43
Name
(RefSeq) probable ATP-dependent RNA helicase DDX43
KO
K17043
ATP-dependent RNA helicase DDX43 [EC:
5.6.2.7
]
Organism
cvg
Cyprinodon variegatus (sheepshead minnow)
Brite
KEGG Orthology (KO) [BR:
cvg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cvg03041
]
107098987 (ddx43)
Enzymes [BR:
cvg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
107098987 (ddx43)
Spliceosome [BR:
cvg03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
107098987 (ddx43)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
KH_1
MOEP19
ResIII
KH_PNO1_2nd
KH_2
SNF2-rel_dom
CMS1
KH-I_KHDC4-BBP
Motif
Other DBs
NCBI-GeneID:
107098987
NCBI-ProteinID:
XP_015252389
LinkDB
All DBs
Position
Unknown
AA seq
699 aa
AA seq
DB search
MADWEDEYDADGVAIQDPVPKITVTSKKIVGSGEDGNVYLGFKSANQFGNWREARDERSW
EGSEFRSRRGPTVRGGGPRECRSGNEMSDRSKPLIFKVENMSIGRIIGRGGAKIRELEES
SGARIKVNRGDDEGEVVLFGSSAVQQKAKEMIEELVADRTPQFGYGRGRCSDGERFGGGV
DRGAMPSNGSVWSQEAIQASKDAPARPFIDWNDIRENRAKYEELKWKDLPPLKKKFYIEA
ASVSVLTPEEVCEWRKENNNIFVDDIKEEGEKRPIPNPCRTFLEAFEPYPEIMENIERVG
FVKPTPIQSQAWPVLLSGEDLIAIAQTGTGKTLAYLLPGFIHMDGQLVPRAERDGPGMLV
LTPTRELALQIEAECNKYSYKGYKSVCIYGGADRKGQINLVKGGVDIVIATPGRLNDLQM
NELINLRSITYLVLDEADRMLDMGFEPQILKILLDIRPDRQTVMTSATWPTGVRRLAKSY
LKNPMMVYVGTLDLASVNTVKQTLLIVQEEEKKSYVFDFIRNMQPLDKVLIFVGRKIVAD
DLSSDMSLQGIAVQCLHGDREQSVREEALRDFKESHVRILVATDLASRGLDVHDITHVFN
YDFPRNIEEYVHRVGRTGRAGRTGAAITLLTRDNWRMASELISILERAGQDVPEELVLMA
ERYEKHRREKELLSPREHGRGGRGGGGRGGRDRGQKYRF
NT seq
2100 nt
NT seq
+upstream
nt +downstream
nt
atggctgactgggaagatgagtacgacgcagacggtgtggccattcaggacccggtacct
aaaataacagtgactagtaagaaaatagtcgggagtggtgaagatggaaatgtttatttg
gggtttaaaagtgcaaaccagtttggaaactggagagaggcgagagatgagcgcagctgg
gagggatccgagttcaggagccgaagaggtccaacagtccgcggcggaggccccagagag
tgtaggagtggaaacgagatgtccgacaggtccaaaccactgatttttaaagtggaaaac
atgtcaatcggaaggataatcggtcgtggtggagctaaaattcgtgaacttgaagaaagt
agtggtgcaaggatcaaggttaacaggggagatgatgaaggagaagtggttctgtttgga
tcatctgcggttcagcaaaaagccaaagaaatgatcgaagagcttgtggcagacagaacc
cctcagtttggttacggtagagggcggtgcagcgatggggaaaggtttggaggaggagtg
gatcgaggagccatgcccagtaatggctcggtgtggtcacaggaggcgatacaggcctca
aaggatgctccggctcgtcctttcatagactggaacgacatccgagaaaacagagcaaag
tacgaggagctgaaatggaaagacctccctccactgaagaagaaattttacatcgaagca
gcgagtgtgtctgtcctcactcctgaggaagtctgtgaatggaggaaggaaaataataat
atatttgtggatgacataaaggaggagggagagaagcgacccatacccaatccctgccgt
acttttctggaggcattcgaaccttatcccgagattatggaaaatattgagcgtgttggt
tttgtcaaaccaacccctatacagtctcaggcatggcctgtgttactcagtggggaggac
ctgatagcgattgctcagacaggcactgggaaaactctggcctacctgctgccagggttc
atccacatggatggacagcttgtgcccagagctgagagggacggtccaggcatgttggtg
ctgacccccaccagagagcttgctctgcagattgaagcagagtgcaacaagtacagttat
aaaggatacaaaagcgtctgcatctatggaggggctgacaggaaaggccagatcaacctg
gtgaaaggcggggtggacatcgtgatcgccacgcctggacgcctcaacgacttgcagatg
aacgagctcatcaatctgcgctccatcacctacttggtgctggacgaggcggatcggatg
cttgatatgggctttgaaccccagattctgaagattttgctggacatccgtccagaccga
cagactgtcatgaccagtgccacctggcccacaggtgtaagaagattggctaaatcctac
ctaaagaatcccatgatggtttacgtgggcaccctggacttggcttcagtcaacacggtg
aagcagacactgctgattgttcaggaggaggagaaaaagtcgtatgttttcgactttatc
aggaatatgcaacccctggataaagtcttaatctttgtgggcaggaagattgtagccgat
gacctatcgagtgacatgtccctgcaaggcatcgctgtgcagtgtctccatggagaccga
gaacagagcgtccgggaggaggctctcagggactttaaggagagtcatgttcgcatcctg
gtcgccacagatctggcttccagggggctggatgtccacgatataacccacgtgtttaac
tacgacttcccacgaaacatagaggagtacgtccatcgcgtgggccgcacaggcagagcg
gggcgaacgggtgctgccattaccctgttgacgagagataactggaggatggcctcagag
ctgatctcaatcctggagagagcaggacaggacgtcccagaagagttggtgctcatggcg
gagagatacgagaagcacaggagggagaaagagctgctttctccaagagaacatggaagg
ggtggaagaggaggtggagggagaggcggcagagaccgaggccagaaataccgattctga
DBGET
integrated database retrieval system
