Cyprinodon variegatus (sheepshead minnow): 107099314
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Entry
107099314 CDS
T06110
Symbol
col17a1
Name
(RefSeq) collagen alpha-1(XVII) chain
KO
K07603
collagen type XVII alpha
Organism
cvg
Cyprinodon variegatus (sheepshead minnow)
Pathway
cvg04382
Cornified envelope formation
Brite
KEGG Orthology (KO) [BR:
cvg00001
]
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
107099314 (col17a1)
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
107099314
NCBI-ProteinID:
XP_015252857
LinkDB
All DBs
Position
Unknown
AA seq
1425 aa
AA seq
DB search
MDEATTIKVISSGGGAAASSTVVTKSTTSGLTSDSDFSLSSGGSGVAKGGSEGASSSHRR
GSKAAKDSGGFSITAVEASSGGRFLAPGATASSGKGEGSKEARGGGSSSMSYSFGSGGRE
GKKEGGLGAVSYSLGGTKEGRKGSSSSAMAYSPAPKERRSVTTMAAALADVFDESSDSSL
EYSRKDYGSSNAMPTATSRGRTQSRESEIRARLQSASPPARWTELDDVKRLLRGNCSTST
SPTQSPNNTLPIPKKASVETKATPESSSEPYSSVWSGDMSSGYSFNTNPNNLSTTSHLYQ
AGSGVQNNLTLSAPSMNAGQSVSTSVYGVQNNLTGPAVLSPTGSSSQIVYGVQKNAPGLS
SPTVRPSSPTSYEASGKDFNFVQIEKENAPVKKESERRVMAKDTGKQFVSTAPATFSGTS
SEDSLKREKQQFLSSAVEEGTDGKCSTTKSSTKDKATYAEIRKDESGFGFCSCCSWWKWL
LALALSLLLLLGLLFGLIALGEEVRRLKKRVDALETVTGTASASSSRQTSSTGVNVIDPL
GSGYNGGTSSGSTLGPSDNSINLGASGPAGSGPGQDSAALQRMVHEIISTELRSNAVRET
LSYSLKGEKGEPGPKGDPGALGPKGDSGFPGLPGPPGPIGHSGLDGPRGPKGNPGEPGPE
GQPGQRGREGPVGPRGEAGPPGFGVKGDKGSQGEPGRPGLAGLPGVPGPKGVAGEQGIPG
GQGVPGPKGFQGEAGPPGAKGDRGTPGFPGIKGDNGERGPRGPAGEPGTPGPQGPAGTKG
SKGSAGEPGSMGPPGSRGSPGFPGDAGRQGPPGIQGPPGVAGLPGTPGSKGEPGSPGKVI
APINSDTVAVPGPPGPAGPPGPAGTPGLSGPIGPAGVPGQQGAKGERGDKGEKGDKGDQG
QRGEPGAGLPGLPGAPGSRGEPGPQGPPGEGKQGPPGRRGPPGDPGVGNPGPPGEKGEPG
SFLPTSETFFAGPPGPPGPQGPPGDIGAQGYQGEPGQPGLPGSPGEPGFPGRPGPPGPKG
DPGTAGGEPGTTYIPGPQGPPGPPGAPGSEVPNMGQYIAEYFQGNNIRQYLAGPPGPPGP
PGEPGSPGFSEDALVDSVASRVISYIQSSGPRAPGPPGSVSVSDIITLLQRDDVRVYLMG
PPGPPGPPGGPGISGYNFNPQEVAERVFIILKERGVLGTSGAPGPPGPPGPPGNLITNGF
QSLIGPPGPPGAPGFPGPQGPPGPPGPPGFGSYVSSDIRDYLESVYLRGPPGHKGEPGLG
SSIEWSPNSLDTIMAKRVSDYIKAHGVLDDIVEDYNSRIFQGPPGPPGPPGPAWFGSPGN
TTNLMEIIQSLKHGPPGPPGPPGPPGEMKLFGSHTNVVDIMDYIKSHGEIVGPPGRPGPK
GDAGLPGLPGAKGERGFPGLQGHRGPKGDRGDFSLTTRKRRSAGV
NT seq
4278 nt
NT seq
+upstream
nt +downstream
nt
atggacgaggcgacaacaattaaggtgatcagctcaggtgggggggctgcagcgagtagc
acagtggtcactaaatcaacaacctctggactcacatcagacagtgatttttctcttagc
tccggtggatcaggtgttgcaaaaggaggctcagaaggagccagcagctcccatcgccgt
ggatccaaagccgctaaggactctgggggcttcagcatcactgctgtagaagcttcctct
ggggggcggtttttggccccgggggccacagcgtcctcaggtaaaggagaggggtccaaa
gaggccagaggaggaggatcctccagcatgtcctacagttttggaagcggaggcagagaa
ggaaaaaaagaaggtggtctcggtgctgtgagctactccttaggagggaccaaggagggg
aggaaggggtcatcatcctccgccatggcctactcacctgctccgaaggagaggaggagc
gtgacaaccatggcagctgctctggcagacgtctttgacgaaagctcggattcttctttg
gagtacagcaggaaagattacgggagttcaaatgcaatgccgactgcaacctctagaggg
agaactcaaagcagagagagtgagatcagagccaggcttcaaagcgcttcaccgccagca
agatggacggagctggatgacgtgaagcgcttactgagggggaactgctccaccagcacc
agtcccactcagtcccccaacaacacgctccccattcccaagaaggccagcgtggaaact
aaggccacacctgagagctcctcagagccgtacagcagcgtttggtcaggagacatgagc
agtggatacagctttaacacaaaccccaacaacttatccaccacctcccatctttaccag
gcaggttcaggagtccagaacaacctgaccctcagcgctccctctatgaacgccggacag
tctgtcagcacctccgtgtatggcgtgcagaacaacctgactggtccagcagttctttca
cccactgggtccagctcacagatagtttatggagtgcagaaaaatgcccctggattaagt
tcccctacagtgagacccagcagtccgacaagttacgaggcttcagggaaagacttcaac
tttgtgcagatagagaaggagaatgctcccgttaaaaaggagagcgagcggcgggtcatg
gctaaagacactgggaagcagtttgtgtccactgctcctgctacattctcaggcacttcc
tctgaggactccctaaagagggaaaagcagcagtttttatccagcgcagtggaggaagga
actgacggcaaatgttcaaccaccaaatcgagcacaaaagacaaagcaacctatgcagag
attcgtaaagatgagtcgggttttggcttctgctcctgctgcagctggtggaagtggctg
ctggccctggcactcagtctgctgctcctcctagggctcctcttcggactcatcgctttg
ggtgaggaagtgagacgcctgaagaaacgtgtcgacgccctggaaaccgtcactggcact
gcgtcggccagctccagtcggcagacgtcctccacaggcgtcaacgtcatcgacccactg
ggctccggatacaatggaggaacctcatccggctccactcttggcccatccgataactca
atcaaccttggggcaagcgggccggcaggaagtggaccgggtcaggacagcgccgccctg
cagaggatggttcatgagataatcagcactgaactacgttcaaatgctgttagagaaact
ctttcttattctctaaaaggagagaaaggagaaccaggacctaaaggtgatccgggggcg
cttggaccaaagggtgacagcggctttccaggcctgccaggtcctcctgggccgatcggg
cactcaggactggatggaccaagaggacccaaaggaaatccaggtgaaccaggtccagaa
ggacaaccaggccagagggggcgggaaggaccagtgggcccacggggagaagctggacca
cctggattcggagttaaaggagataaaggatcccagggtgaaccaggacgtcctggtctt
gctggtcttcctggagtacctggtcctaaaggtgttgctggggagcaggggatccctgga
ggtcaaggtgtacctggtccaaagggattccaaggtgaagctggacccccgggagccaaa
ggggatcgtggaacaccaggttttccaggaattaaaggagataatggagaaagaggccca
cgtggacctgcaggagaaccagggacccctggacctcaaggccctgcaggaacaaaggga
tctaaaggaagtgccggtgaacctggctccatgggacctcctggttcaagaggttcacca
ggttttcccggtgatgccggtcgccaaggacctcctggtatccaaggacccccaggtgtt
gcagggctcccaggcacgcctggaagcaaaggtgaaccaggatcacctggtaaagtcatc
gccccgataaattctgatactgtggctgttcctggacctccagggccagctggacctcca
ggtcctgctggtacccctggtttatcgggtcccattggtcctgctggtgtcccagggcaa
caaggggcaaaaggggaacgaggcgataaaggagaaaaaggagataagggagaccaaggt
caacgtggagagccaggggcaggacttcctggacttccaggggctccagggtcccggggt
gaacctggccctcagggtcctcccggtgagggtaagcagggtccgccgggccgccgaggt
cctccaggagatccaggcgtcggaaatccaggacctccaggagagaaaggagaacctggc
agcttcttgccaacttcagaaaccttctttgcgggaccccccggacctccaggaccacag
ggtccacctggtgatataggagcacaaggttaccaaggtgagccaggtcaacctggtctt
ccagggagtccaggggagccagggttcccaggccgccctggacctccaggaccaaaaggc
gacccaggaactgcaggaggtgaaccaggaaccacatatattcctggaccacagggacca
cccggaccaccaggtgcaccaggaagtgaagtacccaacatgggccagtatattgctgaa
tacttccagggtaacaacattaggcaatacttggctggacctcctggtcctcctggacct
cctggagaacctggctctcctggtttttcagaagacgccctggtggacagtgttgccagt
cgagttatttcctatatccagagttcaggtccaagagcacctggtccacctggatctgtc
tctgtcagtgacatcatcactctattgcagcgagatgatgtgagggtataccttatgggt
ccacctgggccaccaggacctcccggaggtccaggtatcagtggctacaactttaatcca
caggaggttgctgaacgtgtcttcattatcttgaaagagaggggggtgttggggacctct
ggagccccaggaccccctggtcctcctggtcctcctgggaacctgataacaaatgggttc
cagtctctcatcggccctccaggacctcctggtgctcctggctttcccgggccacaaggt
ccgccaggaccacctggaccaccaggatttgggagctatgttagctcagatatccgggac
tatctggagagtgtttacctcagaggccctccgggacataaaggagagccaggtttgggc
agtagcattgagtggagtccaaactctcttgacaccattatggctaaaagagtatccgat
tacatcaaagcccatggtgtactggatgacattgtggaggactacaacagtaggatcttt
caaggtcctccaggaccacctgggcctccaggtcctgcctggtttggttcccctggaaac
accacaaatctaatggaaattatccaaagtctaaagcatggtcccccaggaccaccggga
cctccaggtccaccgggggagatgaagctgtttggttctcacacaaatgttgttgacata
atggactatattaaaagccatggagagattgtgggaccacctggcagaccaggaccaaaa
ggagacgcaggactccctggactgcccggagcaaaaggtgaacgaggttttccaggactt
cagggacacagaggaccaaaaggagacagaggagatttctcgctgacaacaagaaagagg
agaagcgctggtgtttga
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