Cyprinodon variegatus (sheepshead minnow): 107099324
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Entry
107099324 CDS
T06110
Symbol
cnot1
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
cvg
Cyprinodon variegatus (sheepshead minnow)
Pathway
cvg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cvg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107099324 (cnot1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cvg03019
]
107099324 (cnot1)
Messenger RNA biogenesis [BR:
cvg03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
107099324 (cnot1)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
107099324 (cnot1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
107099324
NCBI-ProteinID:
XP_015252873
Ensembl:
ENSCVAG00000018930
LinkDB
All DBs
Position
Unknown
AA seq
2391 aa
AA seq
DB search
MNLDSLSLALSQISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQTQFLIQECVSLISKPNFISTLCYAIDNPLHYQKSLKPSAHLFTQLSKVLK
LSKVQEVIFGLALLNSSNTDLRGFAAQFIKQKLPDLLRSYVDADLGGNQEGGFQDIPIEV
LHLLLSHLLFGQKGASGVGQEQIDAFLKTLCRDFPQERCPVVLAPLLYPEKRDIPMDRIL
PDSGELSKTIMESSLADFIQEVGYGFCASLDECRNIILQYGVREVTASQVARVLGMMART
HSGLSDGIPLQSISAPGSGIWSDGKDKNDGSQAHTWNVEVLIDVVKEVNPNLNFKEVTYE
LDHPGFLIRDSKGLQIVVYGIQRGLGMEVFPVDLFYRPWKHAEGQLSFIQQSLMNPEVFC
FADYPCHTVVIDLLKAPPEDDNREIATWKSLDLVESLLRLSEVGQYEQVKQLFSFPIKHC
PDMLVLALLQISTSWHSLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIMH
SMAEWYMRGEQYDQAKLSRILDVAQDLKSLSMLLNGTPFAFVIDLAALASRREYLKLDKW
LTDKIREHGEPFIQACVTFLKRRCPSIMGGLAPDKDQPKSAQLPPETLATMLACLQSCAG
SVSQELSETILTMVANRSNVMNKARQPPPGVMPKGRAPSASSLDAISPVQVSSCERPMMD
TLPGIGALSLGSTPTTHTQSMPCFPGSAISNPLSPSKAFPPLPNPNSSTPFGVHGSSQLP
GMDSGITSSIGSSLGMPSVSTDPFGTRKMSTPGLTPPTFQQSKMKASDLSQVWPEANQHF
SKEIDDEANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSTIKREREVFNCMLRNLFEEYR
FFPQYPDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPYGSKMYYFGIAALDR
FKNRLKDYPQYCQHLASIGHFLQFPHHLQECVQYIEYGQQSRDPPVKMQGSITTPGSLAL
AQVQAQSQQPPSLKAPQPGQPSTLVTTTTTTTTPAKISTISRPPASTFKKDMPPSINTTN
IDTLLVATDQTERIVEPPENVQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQYL
VMKRVSIEPNFHSLYSNFLDTLKNPEFVKMVLNETYRNIKVLLTSDKAAANFSDRSLLKN
LGHWLGMITVAKNKPILYTDLELKSLLLEAYVKGQQELLYVVPFVAKVLESSLRSMVFRP
QNPWTMAIMNVLAELHQEHDLKLNLKFEIEVLCKNLSLDINELKPGNLLKDKDKLKNLEE
QLSAPKKEAKPPEEILPPSNSGDFVQFAVPATTPAAPTTTCPTTGPPTPQFSYHDINVYA
LAGLAPHININVNIALLQAHPQLKQCVRQSVERAVQELVHPVVDRSIKIAMTTCEQIIRK
DFALDSEESRMRVAAHHMMRNLTAGMAMITCREPLLMSIATNLKNSFAAALRAPTPQQRE
MMEEAAARIAQDNCELACCFIQKTAVEKAGPEMDKRLATEFELRKHARQEGRRYCDPVVL
TYQAERMPEQIRLKVGGVDPKQLAVYEEFARNIPGFLPSNDHSQPTGFLAQPMKQQAWAT
DDVAQIYDKCITDLEQHLHAIPPALAMNPLTQGLRNLLEAVALARNSRDGIAALGLLQKA
VEGLLDATSGADADLLLRYRECHLLVLKALQDGRAYGPQWCNKQITRCLIECRDEYKYNV
EAVELLIRNHLVNMQQYDVHLAQSMENGLHYMAVAFAMQLVKLLLVDERSVSHVTEADLF
QTIEILMRTCAHSRANAPEGLPQLMDVVRSNYEAMIDRAHGGPNFMMHSGISQASEYDDP
PGLREKAEYLLREWVNLYHSAAAGRDSTKAFSAFVGQMHQQGILKTDDLITRFFRLCTEM
CVEISYRAQAEQQHNPAASVAIIRAKCYHNLDAFVRLIALLVKHSGEATNTVTKINLLNK
VLGIVVGVLIQDHDVRHTDFQQLPYHRIFIMLLLELNAPEHVLETINFQTLTAFCNTFHI
LRPTKAPGFVYAWLELISHRIFIARMLAHTPQQKGWPMYAQLLIDLFKYLAPFLRNVELN
KPMQILYKGTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFPRNMRLPDP
FTPNLKVDMLSEINIAPRILTNFTGVMPSQFKKDLDSYLKTRSPVTFLSELRSNLQVSNE
PGNRYNIQLINALVLYVGTQAIAHIHNKGSTPSMSTITHSAHMDIFQNLAVDLDTEGRYL
FLNAIANQLRYPNSHTHYFSCTMLYLFAEANTEAIQEQITRVLLERLIVNRPHPWGLLIT
FIELIKNPAFKFWSHDFVHCAPEIEKLFQSVAQCCMGQKQAQQVMEGTGAS
NT seq
7176 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgactcgctctcgctggctttgtctcaaatcagctatctggtggacaattta
acgaagaaaaactaccgagccagccagcaagaaatacagcatattgtaaatcgtcacggc
cctgaggcagacaggcatttactacgctgtctcttctcccatgtggatttcagtggcgat
ggtaaaagcagtggcaaggattttcaccagacacagtttctgattcaggagtgtgtgtcg
ctgatttcaaagccaaactttatctctactctctgttacgccatcgacaatcccctgcac
taccagaagagtttgaagccatctgcccacctgtttactcaactgagtaaagtacttaaa
ctcagcaaggttcaagaggtaatttttggccttgctctccttaactccagcaacacagat
cttcggggatttgctgcacagttcatcaagcagaaacttcctgatcttctgcggtcctac
gtggacgcagatctcggaggaaaccaagaaggtggcttccaggacattcccatagaggtg
ttgcacctgctgctctcccatctactgtttggacagaagggagccagtggggtagggcag
gagcagattgacgctttcctcaagacactttgccgagatttcccccaggagcgctgtcct
gtggtgctcgcaccactgctgtaccctgaaaaacgggacattcccatggataggatctta
ccagactctggggagttatctaagaccatcatggagagttctcttgcagacttcattcag
gaagttggctatggcttttgtgccagccttgatgaatgcagaaacataattctccagtat
ggggttagagaggtgactgccagccaggtagccagggttctgggaatgatggctcgaacc
cactctggtctatctgatggcatcccacttcagtccatttctgctccaggaagtggaatt
tggagtgatggcaaggataagaacgacggctctcaggcacatacgtggaatgttgaggtt
ctcattgatgttgtcaaagaagttaatcccaacttgaacttcaaagaggtaacgtatgaa
ctggaccatccaggctttctaattcgggacagcaaaggcctgcagatcgtggtgtacggg
atccaacgaggcctggggatggaggtcttccctgttgatctcttttaccggccatggaaa
catgctgaggggcagctttcatttattcagcaatccctgatgaaccctgaggtgttttgc
tttgccgactacccgtgtcacactgtggtcattgacctcctcaaagctccgcctgaggac
gacaacagggagatagctacctggaaaagtctggacttggtggagagtcttcttcgactc
tctgaggttgggcaatacgagcaggtgaagcagctctttagcttcccaatcaagcactgc
ccggacatgttggtgttggcgctactgcagatctccacctcctggcactcgttacgccat
gagctgatttccaccctcatgccaatctttcttggaaaccatcccaactctgccattatc
ctgcactacgcctggcatggacagggacagtctccttccattcgtcagctgattatgcat
tcgatggcagagtggtacatgagaggggaacagtacgatcaggccaagctgtctcggatc
ctggatgtggcccaggacctaaagtctctgtcgatgctgctgaatggtactcctttcgca
tttgtcattgacctcgctgcacttgcctctcgccgggaatacctcaaacttgataaatgg
ctgactgacaaaatccgggagcatggggaaccatttatccaggcatgtgttacgtttctg
aaaagacgctgcccatctatcatggggggtctggctccagataaggaccagcccaaaagt
gcccagcttcctccagagactttagccaccatgcttgcctgtttgcagtcatgtgctggg
agtgtgtcccaggaattgtcagagacaatcctcaccatggttgccaatcgtagcaatgta
atgaataaagctcgacagcctccacctggagtgatgccaaaggggcgcgctccaagcgcc
agcagcctggatgccatctcacctgtacaggtatcgtcatgtgaaaggccaatgatggac
actctgcctggtataggtgccttgagtcttggtagcaccccaaccacccacactcagagc
atgccgtgcttccccggctcagctatcagtaatcctctttccccttcaaaggccttcccg
cctcttccaaaccctaactcgagcacaccttttggggttcatggcagctcgcagcttcct
ggtatggactctggtatcacctccagcattggttccagcctgggaatgccatcagttagc
actgatccctttggcacaaggaagatgagcacacctggcctgacccctcctaccttccag
cagagtaagatgaaggcctctgatctctctcaggtgtggccagaggctaaccagcacttt
agtaaggagatcgacgatgaagctaacagttacttccagcgtatttacaaccatccacct
cacccaaccatgtctgtggacgaagtactggagatgcttcagaggttcaaggactcgacc
atcaagcgggaacgagaagtgttcaattgcatgcttcgaaacttgtttgaagaatacaga
ttcttccctcagtatccagacaaagaactgcacatcactgcctgcctctttggtggtatt
attgagaagggtcttgtcacctacatggctctgggtctggccctgcgttacgttcttgag
gccttacggaaaccatacggatccaaaatgtattattttggtattgctgcactggatagg
ttcaaaaacagacttaaggactaccctcagtactgtcaacatctggcctcaatcggtcac
ttccttcagtttcctcaccatttacaagagtgtgtgcagtatatcgagtatggccaacag
tcacgtgaccctccggtgaagatgcagggatccatcaccacacccggaagtctcgccctg
gcccaggttcaggctcagtcccagcagcctccctctctcaaagcgccacagccaggccag
ccaagcaccctggtcaccaccaccaccacaacaaccacacctgccaaaataagcaccatc
tccaggcctccagccagcacctttaagaaggatatgcctccttcaataaacactaccaac
atcgacaccttgctggttgccactgaccaaacagagcggattgttgaacccccagagaat
gtccaggagaaaatagcttttatcttcaataacctttctcagtccaacatgacacagaag
gttgaggagttgaaggaaactgtgaaagaagagtttatgccatgggtgtctcagtacctt
gtgatgaagcgggtcagcattgagcctaactttcacagcctctattccaactttttggac
acgctcaagaacccagagtttgtcaagatggttctaaatgaaacttacagaaatatcaag
gtgcttctaacttctgacaaggcagctgctaacttctctgatcgctccctgctgaagaac
ctaggccactggttgggcatgattacagtggccaaaaacaagcctatcctctacacagac
ctggaactcaaatctctgttattagaagcctacgtgaaaggccagcaggagctcctttat
gtggttccctttgtggccaaagtcttggaatctagtctacggagcatggttttcagacct
cagaacccttggaccatggccattatgaatgttctcgctgagctccaccaggaacatgat
cttaagttaaatttaaagtttgagattgaagttctttgcaagaacttgtctcttgacatc
aacgagctgaagccagggaatctgctgaaggacaaagataagctgaagaacctggaggag
cagttgtctgcaccaaagaaagaggcaaagccgccagaagagatcctaccgccttctaac
tcaggagactttgttcaatttgcagttcctgcgacgaccccagctgcccccaccaccacg
tgccccactactgggcctcccactccacaattcagttaccatgacatcaacgtgtatgct
ctggcaggcctggctccacatatcaatataaatgtcaatatcgcgctgctgcaggctcac
cctcagctgaagcagtgtgtacgtcagtctgtggagcgagcagtccaagagctggtgcac
cccgtagtggaccgctccatcaaaatcgctatgacgacgtgtgagcagatcattaggaag
gactttgccctggattcagaggagtctcgcatgcgtgtggctgcacaccacatgatgaga
aacctgactgctggcatggctatgattacgtgccgcgagccgctactgatgagtatcgcc
accaacctaaagaacagcttcgctgctgcactgagggcaccaaccccacaacagagagaa
atgatggaggaggccgcagccaggattgctcaggacaactgtgaactagcttgttgcttc
attcagaaaactgcagtggagaaagctggacctgaaatggacaagagattggccacggag
tttgaattgaggaagcatgcacgccaggaaggacgtcgctactgtgatcctgtcgtcctg
acctatcaggctgagcggatgcctgaacagatcaggctcaaggtggggggagtggaccct
aaacagctggctgtttatgaggagtttgccaggaacattccaggtttcctaccaagcaat
gatcactcccaacccactggcttcctggctcagcccatgaagcaacaggcctgggcgact
gatgatgtggctcagatttatgataagtgcatcacagacttggagcagcaccttcatgcc
attcctccagctctggccatgaaccctctgacccagggcctgaggaacctgctggaagct
gtggctttggcacgaaactccagggatggcattgctgcacttggcctcctgcagaaggct
gttgaaggtctgttggatgctaccagtggggctgatgctgacctcctacttcgctacaga
gagtgccacctgctggtgctgaaagctctgcaggatggacgggcctatggcccacagtgg
tgcaataagcagattaccaggtgtcttattgaatgccgggatgaatacaaatataacgtg
gaagcagtggagcttctgatcaggaaccatctggtgaacatgcagcagtatgatgtgcac
ctggctcagtcaatggagaacgggctgcactatatggctgttgcctttgccatgcagttg
gtgaagctgctgctggtggacgaacgaagcgtgagtcacgtcactgaagcggacctcttc
cagaccattgagattctaatgagaacctgtgcacactccagagccaatgcacctgagggg
cttcctcagctgatggatgttgttcgctccaattatgaagccatgattgatcgggcccat
gggggacccaacttcatgatgcactctgggatctcccaggcttcagaatatgatgatcct
ccaggtctgagggagaaggctgagtacctgctgagagagtgggtcaacctgtatcactca
gctgcagctggcagggacagcaccaaagctttctctgccttcgttggccagatgcaccag
cagggaatactgaagacagatgacctgatcacacggttcttccggctttgcacagaaatg
tgcgtggagatcagctaccgtgcacaggccgaacagcagcacaacccagcagctagcgta
gccatcatccgcgccaaatgttaccacaacctggatgccttcgtcaggctcatagccttg
cttgtgaagcactctggagaggccaccaacaccgtgacaaagatcaaccttctcaacaag
gttctgggtatcgttgtcggggtgctgatccaggaccatgacgtacgtcacacagatttc
cagcagctgccgtaccatcgtatttttatcatgctgctgttggagctcaacgcccccgaa
catgtcctggagaccatcaacttccagaccctcactgccttctgcaacacatttcacatc
ctgagacccaccaaagctcctggcttcgtgtacgcctggctggaactgatctcccatcgc
atcttcattgccagaatgctggcacacacaccccagcagaagggttggcccatgtacgca
cagctgctgattgacctctttaagtatctggcccccttcctaaggaatgtggagcttaac
aaacctatgcaaattctctataagggcaccctgagggttcttctggttctgctgcacgac
ttcccagagttcctctgtgattaccattatggcttctgtgatgttattccacccaactgc
atccagctccgtaaccttatcctcagtgccttcccacgcaacatgaggcttccggacccc
ttcacacccaacctaaaggtggacatgcttagcgagatcaacatcgctccccgtatcctc
accaacttcacaggcgtcatgccatcacagtttaagaaggatctggactcttacctgaag
acacgctcacctgtgactttcctgtctgagctgcgcagcaacctgcaggtgtcgaacgaa
ccaggaaaccgctacaacatccaactgatcaatgctttagtgttgtatgttggcacacag
gcaatcgctcacatccacaacaagggcagcactccatctatgagcaccataacacactct
gctcacatggacatcttccagaacctggctgtggacctggacactgaaggccggtacttg
ttcctgaacgccatcgccaatcagctgcgctaccccaacagccacacccattattttagc
tgtaccatgctgtacctgtttgccgaagccaacactgaagccatccaggagcagatcacc
agggttctgttggagaggctaattgtcaacagacctcacccgtggggacttcttatcact
tttatcgagctgatcaagaatcctgccttcaagttctggagtcatgactttgtgcactgt
gcgcccgagattgaaaagttgttccagtctgtggcccagtgttgcatggggcagaagcaa
gcccagcaggtgatggagggcactggtgccagctaa
DBGET
integrated database retrieval system
