Cyprinodon variegatus (sheepshead minnow): 107099327
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Entry
107099327 CDS
T06110
Symbol
palb2
Name
(RefSeq) partner and localizer of BRCA2 isoform X1
KO
K10897
partner and localizer of BRCA2
Organism
cvg
Cyprinodon variegatus (sheepshead minnow)
Pathway
cvg03440
Homologous recombination
cvg03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
cvg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
107099327 (palb2)
03460 Fanconi anemia pathway
107099327 (palb2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cvg03400
]
107099327 (palb2)
DNA repair and recombination proteins [BR:
cvg03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA complex
107099327 (palb2)
FA (Fanconi anemia) pathway
Downstream FA components
107099327 (palb2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PALB2_WD40
DUF4718
Motif
Other DBs
NCBI-GeneID:
107099327
NCBI-ProteinID:
XP_015252887
Ensembl:
ENSCVAG00000018661
LinkDB
All DBs
Position
Unknown
AA seq
1326 aa
AA seq
DB search
MEDNVSDFLHSEEQLKTTLHCDDKEKLRRKLEQLQREYLKTAQRLKRAERLDAVRRHVKS
RISLHKHQEQREPVVTSNSLISPSSFILNKASIPDSQQYQADAVDSDASRRKPVIQFSLP
GDSAYPQTPDPSNDIARSHRPSPALRLRSKRSRLRWERRSADALDSRQEQAEGIENTEIK
ENVVNESEEQFSESPSLLLTHWSTQESTESGDKMVKENQRPQDDRGEETDQDVHLKFGKP
ALTTDEGQDVRENSLMDSELREDGIRQSKESDPVGCEEKKQENTKQNAAQVTGIEKQEEI
VENKVEKNQTTANEKAASLLDSCTLVEGLLFPVEYYIRTTRRMALSQSQPDVQAVIQSRL
SAGRHRRSRGRSRGTHRDSQQRDRNTQTDSSSSTTPSTSLEPLKPSTANPCEDCSQSSID
TSSSDIPEGPFPPPVPSLRPPRGRRKGRGRGRGRSLRPPGCKQTPITAIPSTQSIHQADE
THASATPLPEDQETSGPQQSSTHSFPAQPAVVSGAPTNNAANAQEKVYPIFLKCSTSRSQ
QMNTGTSDWASLLLPPVSSLPQTPPPSLPSLIRSLKNLDILQDFHLPDDQFASLKLHKLR
QVAMESGHEQFSTPSHNTRRRSNCLYSAICPPTPCRLPLSLTPLISNWPCPNESEQTECK
LTDNLSNKSVTEELCDPDVSGTNMKLDVDKLKDSSKAILEVQGITGSCELEERDTGTQSC
TFSSRTANSINCVDLEAHQDVVGRSVCKENAHSDESKVEQPAGKHIRLHDPIPTDPQFED
CSVAEQRSFCFSESKTAEEAPTTFTDSPVCSKATAKLPVNGLNLQYSSGDYEEPKTNLSK
DTKMKNTDSQFVFKSPLESVVSSFTPPYIPSSTPASIPVLPSLGITPNPAQLTSSPSAPA
LYPPPPHSPSTQELSPPDLSPISFITSLPPSVPSPALSDQDKRGEPAACPTASSIQLQSS
AVEKGMTKEETADKWLLRCTHTLEAPAGGSLVDACCVSGQGGALSVAAAGKWAVCLWSQT
SESDWSLRHTWTFSEPVINIFPVPDSEGLMFVSLGQLEIRELRMLSCFSLRQMLICEGII
HAVVGLFNSRVVTSSDSTVGSTLQVFTLSDSSSRLSSQPLVSPGVCVSALAPVEGLPDAL
IGTDEGGHLFIWNLKTGQLLSRVLLEHSLSNTACLRGYSHCGLLLVLLQHQFLRSLDLEN
KEKQEKNEILSEGKLKPALFSLVGINPLSGKSVLVTAVRPPKSWTGRICEVDINRSSIVG
LSQSGRVCVWELGDGGTPRTMEAPEDEDWQLARWGEEDSLVIGHQNGDVSLHSYSSVKQI
HHTKKD
NT seq
3981 nt
NT seq
+upstream
nt +downstream
nt
atggaggacaatgttagtgattttttgcacagtgaggaacagcttaagactacgctgcac
tgtgatgacaaggagaagcttcgtaggaaactggagcagctacaaagggaatatctgaag
accgctcagagactgaagcgtgccgagcgtttggatgcagtgagaaggcatgtgaaaagt
aggatttctctccacaagcaccaagagcagagagagccagtggttacatccaactctctc
atcagtccctcctcgtttattctcaacaaggcaagcatccctgactcacaacagtatcag
gcagatgcagtagattctgatgcatccaggaggaaaccggtgatacaattctcgctccct
ggagactctgcatacccacaaaccccagatcccagcaatgacatcgctagaagccacaga
cccagcccggccttgcggctgcgctcaaaacgtagccgcttacgctgggaaaggaggagt
gctgacgctctcgacagcagacaggagcaagctgaagggattgaaaacacagaaattaaa
gaaaatgttgtcaatgaaagtgaagagcagttttccgagtcgccttctttgctactcaca
cattggagcacacaagaaagcactgaatctggagacaaaatggtaaaggagaaccaaaga
ccccaggatgacagaggagaggagactgatcaggatgttcatctgaaatttggtaaacct
gctttaaccacagatgaagggcaagatgttagagaaaacagtttgatggatagtgagtta
agagaagatggtattaggcaaagcaaggagagtgatccagtaggatgtgaagagaagaaa
caagaaaacactaaacaaaatgctgcccaggtgacaggaattgaaaaacaggaggagatt
gttgaaaacaaagtagaaaagaatcaaaccacagccaatgaaaaagctgccagcctccta
gactcctgcacgttagttgaaggactacttttccctgtggagtactacattcgaaccaca
aggcgtatggcgctttcccagagccagcccgatgtgcaggcggtcatccagtctcggctc
agtgcagggcgccaccgcaggagtcgaggccgcagcaggggaacccacagggactcccag
caacgcgaccgaaacactcagacggattcatcctcttcgacaactccgtccacgtctcta
gagcctcttaaaccatctactgctaatccctgtgaagactgtagccagagctccattgac
acttccagctctgacattccagaaggtccctttccacctccagtccccagcctccgtcca
cccagaggaagaaggaaaggcagaggtagaggcagggggaggtctttgagaccacccgga
tgtaaacaaacccccattaccgctataccttctactcagtctatccatcaggctgatgag
acacatgcctctgcaacaccattaccagaagatcaagagacatctggaccccagcagtcc
tccacccacagctttccagcccaacctgctgtagtcagtggagctccaaccaataatgct
gctaacgcccaggagaaagtctatcccatcttcctgaagtgcagcaccagcagaagccaa
cagatgaacacaggcacatcagactgggcgtctcttctcctgccccccgtctcttcgttg
cctcaaacacccccgccttctcttccctctctgatccgcagtttgaagaacttagacatc
ctgcaagatttccacctccctgatgaccagtttgcctccctgaagctgcacaagctccgt
caggttgccatggaatcaggccacgaacagttctccaccccatcgcacaacacacggcga
cgctctaactgcctctacagcgccatctgtccaccgacgccctgtcgcctcccgctcagt
ctcacgcctttgatctcaaactggccctgtccgaacgagagcgagcagacagaatgcaag
ctcaccgataatttgagtaataagagcgtaactgaagaactatgtgatccagatgtttca
ggaactaatatgaagcttgacgtagacaaacttaaagattcgagcaaagccattttagag
gtgcaaggcatcactggaagctgtgagctggaagaacgtgacactgggactcagagctgc
acattctctagccgtactgctaattctataaactgcgttgacctggaagctcatcaggat
gtggtgggaaggagcgtgtgcaaagaaaatgctcactcagatgagtcaaaagtggagcag
cctgctggaaagcatattcgtttacatgatcccataccgacagatcctcagtttgaagat
tgttctgtcgctgagcaacggtccttttgtttcagtgaaagtaaaacagcagaggaggct
cctacaacctttacagattccccagtatgctctaaggctacagcaaagcttcctgtaaat
ggcttaaaccttcagtattcttcaggagattatgaagaacctaaaacaaacctttccaaa
gacacaaagatgaaaaatacagactctcaatttgtgtttaagtctcctctggagtcagtg
gtatcctcctttacacccccttacatcccctcatccactccagcatccatcccagtcctg
ccctccttgggaatcacccctaatcccgcccagctaacttcctcgccctctgctcctgct
ctctacccgcctccacctcatagcccttccactcaggaactgtctcctcctgatctctct
cctatctccttcatcacctccctccctcccagtgttccttctccagctttaagcgatcag
gataagagaggagaacccgccgcctgtccgactgcatccagtatccagctccagagctca
gctgtggagaagggaatgactaaagaggaaactgcagataaatggctgctgaggtgcaca
cacacactggaggcaccggctggcggctctctggtggatgcgtgctgtgtttcaggtcaa
ggtggtgctttgtctgttgcagccgcaggaaaatgggcggtatgcctgtggagccaaacc
tcagagtctgactggagcctcagacacacctggacctttagtgagcctgtgataaacata
tttcccgtcccagactctgaaggcctgatgttcgtatctttgggtcagctggagataaga
gagctgagaatgctgtcctgtttcagcctccggcagatgctaatatgcgagggcatcatc
catgcagtggttggcttgttcaactccagagtggttacctcctccgattctactgtaggc
tccaccctgcaggtgtttacgctgtcagacagcagcagcagactgagttctcagcctctt
gtgtctcctggtgtctgtgtgagcgctctcgctccagtagagggacttcctgatgctctc
attggtacagatgagggaggacacctttttatctggaatttaaaaactggccagctgctg
agcagagtgctgctagaacacagtttatccaacacagcctgcctcagaggttactcccac
tgtggattgttgctagttctgctgcagcatcagttcctgagatccctggatctagaaaat
aaagagaaacaagagaaaaatgagattctttcagaggggaagctgaagccagcattgttc
tctttagttggcataaatcctctgagtggaaaatctgtcttggttactgcggtgcgtcct
ccgaagagttggaccggcaggatctgtgaagtagacattaaccgctccagcatagtgggc
ctgagtcagagcggtcgtgtctgcgtgtgggagctcggagacgggggaacccctcggacg
atggaggctccggaggatgaggactggcagctagctcgatggggggaagaggactcgctg
gtgatcggacatcagaacggagacgtttccttgcattcctacagcagcgtcaagcagatt
catcacactaaaaaagactag
DBGET
integrated database retrieval system
