Cyprinodon variegatus (sheepshead minnow): 107099777
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Entry
107099777 CDS
T06110
Symbol
frem1
Name
(RefSeq) FRAS1-related extracellular matrix protein 1
KO
K23380
FRAS1-related extracelluar matrix protein 1/2
Organism
cvg
Cyprinodon variegatus (sheepshead minnow)
Pathway
cvg04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
cvg00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
107099777 (frem1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04091 Lectins [BR:
cvg04091
]
107099777 (frem1)
Lectins [BR:
cvg04091
]
C-Type lectins
Lecticans
107099777 (frem1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cadherin_3
Frem_N
Cadherin_4
Lectin_C
Calx-beta
Motif
Other DBs
NCBI-GeneID:
107099777
NCBI-ProteinID:
XP_015253524
Ensembl:
ENSCVAG00000020543
LinkDB
All DBs
Position
Unknown
AA seq
2022 aa
AA seq
DB search
MGPQGPTLALTLLVGLLCLLTCSSDGSLVKVNKGLKVKRGQSVYLQEGDLQFHIPVQKDV
CKVEVVPNEPITQRVGKLVPQVFDCHYLSDEVKYVHNGCPLLKEDTVKLRLYRFTETETH
MEVFTLHVDIIAPECNIIKMGPKSLQVSEFYGLSDAIDGNVVSFHYERRSSLECSVQISP
QESHLPAHGRLVTGDPERATKRGDEPESFIHLQQQLDNKARAMCKSEHCLKGLKLVTFTK
VPCDDFLLMGLKYQHIDPPSPDIDYIVIRLDLKDTRSGSIYQSEQAWLPVRIVGAMPNQP
PKPSFMSMFILEVDQFILTPLSTATLDAEDEETPKQLLVFNITNPPKEGFITHLSDHTHP
ISSFTWLDLNDMLIAYQPPNSSHSQRRNYEVELEVYDFFFEKSSSITVHTSVRNADTNAP
RVSWNMGLSLLEGQSRPITWDQLQIVDNDNLNVVRVITVDGLLHGQLTVRGGKGFMFTIN
DIKAGVVCYHHDDSDSTKDFVIFRITDGRHQTRHKFPIKILPKDDSPPFLITNMLVEVLE
GQTTLLRGSTLKASDMDSSDDYILFNITRLPQAGEVMKIPGPGLAGYPVSRFLQKDLSQS
IVYYRHLGNEVFDDSFEVVLSDFHDPPNLSEPQVVVVHIASVPDQPPKEVPGSRRCLVVK
ETEIAHITRQQLHFVDPESPDSELTYTVTTPPFFSGHYSGSDAGRLFLVDSIPKFTKDSN
APVLRLFTQHAVNFMKVAYMPPIMDIGPHPQYIQFILSVTNHLGKTITGICFNITLMPVD
NQPPKVIANLLTVDEGGESLLGPEHLQVSDVDSLPEALRVELQRGPEHGVLHVGGHPLTP
GQNFTLQDLISRRVRYNHDSSETTEDTIELRATDGTNSVSFALPVKVVPINDELPVMVTG
LNPVLRCPEGEQIVITSEYIFATDVDSDNRSLAFLIARQPYHGVVLRNGVIVDRFIQADI
TAGIIAYRHTGLEIGLTPRHDTITFVISDGENETPALCCGRETPTRGRGKTPQTRDSLPV
YDLHITVFPVDSQPPSLETGEIFKVDEGGTAQITAAHLRASDMDSVLDQLVVSLISPPQF
GYIENVLPSPGFEKSNTGISIASFLYKDITKGYINYVQSRHQGIEPTADQFMLCVSDGKR
NSANIPFYIIINPTNDEIPEFMVQNITVQEGEMKHLDTSVFHAMDLDIPKNTLIFSVVRP
PQHGSIIHHSNGNPIMKRQEPDLWPSVAAFTMKDVKKGLDLMYLHDDSENMMDSFIVQLT
DGKHQLERRVMVEVLPVNDEEPHLIRNNGLEVKPGEARVISSVTLFAEDKDTPSTEIMYI
FESVPTQGILQLQEGHNWVTLTAGRRCTQDMVDMNLLRYIHTGHHATKTQDFFVFHLMDG
KNQSPPQHFQISVRDLEKGNIAIFVKPVNVSRGDRVVLTTDVLLATDDTDKPEELLYVIT
SPPAHGHIEYIKHPGVIISTFSQMDIAANLVAYVHDNRGEKATEKFQFVVSNGKTSRHGS
LELHVEMVDRVLPSLTSNKGLQVPQGSTMILGPECLSLSDPDTPPGALTFSLHQPPQYGT
LLLAGVALTAGSNFSMKHIKELEVTYRHDGGPSQIDRFAFTASDTSRQGFLLDGKLQTEP
VFFTIQIKPLDKSSPEVMKLLPLWKAELLPDGRYGIFLTSRELKAQDRDSREEELIFCIV
RSPYFGYLENITTGVTKRTWQTEIVEDHIEEADEHFEVLLVSPEATVIGSISKAKLTIRD
QGKGECRPKQDQQAPLLGGKEIQPDAYPQHGSIRLEKLPLGKESVIWARGDSISTQGEDL
PRKKLRVVSNPKSISPSTVFHNGTDVVYTYHGIMQMRVEDDASSRMSRRANIRVVSRGSQ
PQRPGLTTDADSPREGRIQVKKGQARGNLVGARMCPQGWTFQGGRCFILSTEHKLTWNAA
NRACRERFKGNLASVLSKADMNWLWDFSGRKPFWIGLSNGKGGGLWEWAGGEPVSYTNWK
KAPPRSRMKGNRKCVLVWRRAKWQIRDCKSGKGHRFVCSVKL
NT seq
6069 nt
NT seq
+upstream
nt +downstream
nt
atgggtccccaaggtcccactctggccttgactttgcttgttgggcttctttgtttgctg
acctgctcatctgatggttccctggtgaaagtcaataagggcttaaaggtgaaacgaggt
cagtcagtctacctccaggaaggtgacctgcagttccacattcccgtccagaaggatgtg
tgcaaggtggaggtagtgccaaacgagcccataactcaacgagtgggaaaacttgtgcct
caggtgtttgactgccattatctgtctgatgaagtaaagtatgtccacaatggctgtccg
ttgttaaaggaagataccgtcaagcttcgcctatacaggttcacagagacagagacacac
atggaggtgtttactctccatgtggacattatagcgcctgaatgcaacatcattaagatg
ggtccaaaatccctccaggtctctgagttctacggcctctctgatgctattgatggtaac
gtggtctcctttcactatgaaaggagatccagtctggaatgtagcgtccagattagcccc
caggaatcccaccttccagctcacggccggctggtcaccggagacccagagagagccacc
aagagaggcgacgagccagaaagtttcatccacttacagcagcagctagataataaagca
agagcaatgtgtaaatctgaacactgccttaagggtctgaagctagtgacgttcactaaa
gtcccatgtgatgacttcctcctgatgggattaaagtaccaacacatagatcccccgtct
ccagatatagactacattgtaatcagacttgacctcaaggacaccaggagcggcagcata
tatcagtctgagcaggcctggcttccggtccggatagttggcgcaatgcccaaccagcct
cccaaaccatctttcatgtccatgtttatcttggaggtagaccagttcattctcacgccc
ctctccactgccacattggacgctgaagatgaggaaactccaaaacagcttctggttttt
aacatcacaaacccccccaaggaaggctttatcacccacctatctgatcacactcatccc
atctcatcctttacatggctcgatctgaatgacatgctcatagcatatcaacctccgaat
tcttcacattcccaacgaaggaattatgaggtagaattggaggtttatgatttcttcttt
gagaagagctcatcaataactgtccacacatctgtaaggaatgcagatacaaatgcacca
agagtgtcctggaacatgggtcttagtctgctggagggtcagtctcgtccgataacgtgg
gaccaattgcaaatcgtggataatgacaatctgaatgtagttcgagtcatcactgtggat
ggcctcctgcatggacaactaactgtaagaggtggaaagggtttcatgttcaccatcaat
gacataaaagcaggagttgtctgttatcaccatgacgacagcgactctacaaaggacttt
gtcatttttcgcatcaccgatggccgccatcagacccgacacaagtttcccatcaaaatt
ctccccaaagatgacagccctccgttccttataaccaacatgctggtggaggtcttggaa
ggccagaccaccctgctcagaggctccaccctcaaggcttcagacatggactctagtgat
gactatatcctctttaatatcactcgcctcccgcaggcaggagaggtcatgaaaatccca
ggaccagggctggcagggtaccccgtgagccgcttccttcagaaggacctttcccagtcc
attgtgtactacagacaccttgggaacgaggtttttgatgactcatttgaggttgttctg
tctgatttccatgatccccctaacctttcagaacctcaggtggtcgtggttcacatagcc
tctgttccagaccaaccaccaaaggaggttcctggttccaggcggtgtcttgtggttaaa
gaaacagaaatagcccacatcacacggcaacagcttcactttgtcgacccagagtcgcca
gacagcgagctcacttacacagttacgactccacctttcttctctggtcactacagcggt
tcagatgcgggaaggttattcttggttgacagcatacccaaatttaccaaagattctaat
gcaccagtcctcagactcttcacacaacatgcagtgaactttatgaaagtagcctacatg
cctccaatcatggacatcggccctcaccctcagtatatccagtttattctgtctgtgacc
aaccatctgggaaaaacaatcactgggatctgctttaatatcactctaatgccagtggac
aatcagccaccaaaggttatcgccaaccttctgactgtagatgagggaggggagtccttg
ctgggcccagaacacttgcaggtgtcagatgttgactctctgccagaggcattgcgggtc
gagctccaaaggggaccagagcatggcgttctgcacgttggtggccatccactgacacca
ggccagaactttacactacaggacctgatcagtcggagggttaggtacaatcacgacagc
tcagaaactacagaagacaccattgagttgagagcaacagatggaactaattcagtcagt
ttcgctctgcctgtaaaggtcgtacctatcaacgatgagctcccggtgatggttactggt
ttgaacccagttctcagatgtccggaaggagaacaaatagtaatcacttcagagtacatc
tttgccactgatgtggacagcgataacagaagccttgccttcctgattgcccggcagccc
taccatggggtggttctgcgaaatggtgttattgtagatcgcttcatccaagcagacatt
actgcaggaatcattgcgtacagacacacagggctggagattggattaactcctcgacat
gacactatcacgtttgtcatctctgatggggaaaatgagacaccggctttgtgctgcggc
agggaaactcccaccagaggcagaggaaagactcctcagacacgggacagcttgcctgtc
tacgacctccatatcacagtgtttcctgttgacagtcagccaccctcactggaaacaggt
gagatctttaaggtggatgaaggtgggacggcccagataactgctgcccatttaagggcc
tctgacatggattcagtcctagaccagcttgttgttagtttgatctctcctccccagttt
ggctacatagaaaatgtcctccccagccctggctttgagaaaagcaacacaggcataagc
atagcttcttttctatacaaggacatcaccaagggttatattaactatgtacagtccaga
caccaggggattgaacccactgctgaccagttcatgctttgtgtctcggacggaaagcgc
aactctgctaacatccctttctacattataattaacccaacaaatgatgaaattcctgaa
tttatggtacaaaacatcacggtacaagaaggagaaatgaaacacctggacacatctgtg
tttcatgcgatggacctagacatccccaagaataccctgatcttctctgtggtcagacct
ccccagcatggaagcatcatccatcacagcaatggaaacccaatcatgaagagacaggag
cctgacctatggccttctgtggctgcctttactatgaaagatgtcaaaaagggtttggat
ctgatgtatctccatgatgacagtgaaaacatgatggacagttttatcgttcagttgact
gatggcaaacatcagctagagagacgggtgatggtggaagttctaccagtgaatgacgaa
gaacctcatcttatcaggaacaatgggcttgaggtgaaaccgggagaagctagggttata
tccagtgttacattatttgctgaggacaaagataccccctctacagaaatcatgtacatt
tttgagagcgttccaacacaaggaatactccaattacaggaaggccataattgggtgaca
cttacagctgggagaaggtgtacccaggacatggttgacatgaaccttttgcgttatata
cacactggccatcatgccactaaaacacaggacttctttgttttccacttgatggatgga
aagaatcagtcaccaccacagcacttccagatttctgtcagagatctggaaaaaggaaac
attgccatctttgtgaagccggtaaatgtcagccgaggagaccgtgtggttcttaccacc
gatgtgctgctggccacagatgacacagacaagccagaggagcttctgtacgttatcacc
agcccacctgctcacggacacatagagtacatcaaacatccaggggtgattatatccacc
ttcagccaaatggacatagcagcaaaccttgttgcttacgtccacgacaaccgaggagaa
aaggcaacagaaaagtttcagtttgttgtaagcaatggtaagactagtcgacacggaagc
ttagagctgcatgtggaaatggtggatcgtgttctgccatcgctgacgtccaacaaaggc
ctccaggtccctcagggttccaccatgatccttggcccagaatgtctctctctgtcggat
cctgacactccacctggagccctgaccttttctctccaccagcctccgcagtatgggact
cttcttttagctggtgttgcactgactgctggctcaaacttttcaatgaaacacatcaag
gagctggaggtgacgtacagacatgacgggggaccatctcagatcgaccggtttgccttc
acggcctctgacacgtccagacaaggttttctgttagatggaaagctgcaaacggagccg
gtgtttttcaccattcagatcaagcctttggataaatcttctccagaagtaatgaagcta
ctcccactttggaaagcagagcttttacccgatggcagatatgggattttcctgacatct
cgagagcttaaggcgcaggacagagacagcagagaagaagagctcatattttgcattgtt
cgttcaccttattttggctaccttgaaaacattaccacaggagtaacaaagcggacttgg
cagactgagatcgttgaggaccacattgaggaggcagatgaacatttcgaggtgctgctt
gtttctcctgaggctacggtcattggtagcatcagcaaggctaaacttacaatcagagac
cagggaaaaggagagtgcagaccaaagcaggaccaacaagctcctcttctgggaggaaaa
gagattcaacccgacgcgtatccccagcatgggtccatccgtttggagaaacttcccctc
ggtaaagaatcggttatatgggccagaggagacagcatctctacccaaggagaagatctc
ccgaggaagaaactcagagttgtcagcaatcccaaatctatttccccttcaacagtgttc
cacaatgggacagatgtagtttacacatatcatggaatcatgcaaatgcgagtagaggat
gatgcatcatctaggatgagcaggagggcaaacatccgagtggttagcaggggttcacag
ccacagcgacctggacttactactgacgccgactctccaagagagggaaggattcaagtt
aagaagggacaagctcgaggaaatctggttggtgccaggatgtgtcctcagggatggact
tttcaaggaggacgttgttttattctcagcactgagcacaagctgacatggaatgcagca
aacagggcctgcagagaaaggtttaaaggaaatcttgcaagcgttttgtctaaagctgac
atgaactggttgtgggacttcagtggaagaaagcctttctggataggtctgagcaacgga
aagggtggaggactgtgggagtgggcgggcggcgaacccgtcagctacacgaactggaaa
aaggcgcctccccgctccagaatgaaaggcaaccggaagtgtgtgctggtgtggagaaga
gccaagtggcaaatcagagattgcaagagcggcaaaggccatcgctttgtttgctcagtg
aaactctaa
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integrated database retrieval system
