Cyprinodon variegatus (sheepshead minnow): 107099869
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Entry
107099869 CDS
T06110
Symbol
col4a6
Name
(RefSeq) collagen alpha-6(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
cvg
Cyprinodon variegatus (sheepshead minnow)
Pathway
cvg04382
Cornified envelope formation
cvg04510
Focal adhesion
cvg04512
ECM-receptor interaction
cvg04518
Integrin signaling
cvg04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
cvg00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
107099869 (col4a6)
04518 Integrin signaling
107099869 (col4a6)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
107099869 (col4a6)
09142 Cell motility
04820 Cytoskeleton in muscle cells
107099869 (col4a6)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
107099869 (col4a6)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
cvg04147
]
107099869 (col4a6)
00536 Glycosaminoglycan binding proteins [BR:
cvg00536
]
107099869 (col4a6)
Exosome [BR:
cvg04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
107099869 (col4a6)
Glycosaminoglycan binding proteins [BR:
cvg00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
107099869 (col4a6)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
107099869
NCBI-ProteinID:
XP_015253630
Ensembl:
ENSCVAG00000018738
LinkDB
All DBs
Position
Unknown
AA seq
1707 aa
AA seq
DB search
MRSLIYLLVLGCVLTPTLGGGNSDEPCAGLDCSRGCKCIPEKGSRGRPGPLGEVGQPGPD
GPRGGIGPRGPKGEKGHVGIKGPSGAKGDKGPMGVPGFRGNDGVPGHPGQQGSRGLPGND
GCNGTRGDPGPPGYGSGLPGLPGFQGPTGPKGQKGDPVYISDDGSTGVPGPPGPRGPPGF
RGRDGPPGFPGPRGPNGYPGPPGPAGPQGPMGSRGDIYKGGKGEKGDVGLPGPSGSPGDG
SLSAEKVVTIYKGNKGDPGPKGRKGDPGRFGPPGPFGYPGEYGEKGIPGYPGPRGPSGFT
GPPGAPGQDGLPGDPGFPGQNGFPGIKGERGEVGLPGPAIFNNGFGPYVQGSPGDPGFPG
RPGVRGDQGFQGSVGPPGPPGPFRIGPPGSPGFPGNEGQKGEKGDPGVPKYGPEGFQGLP
GRPGRPGPPGPPGQINPGPNPDPCDIRPPVPTAVPSPRPQGPPGIPGPPGQIGFPGVKGS
KGFRGDPGNCECQGEDRGQPGLPGPQGPVGSPGFPGRKGAPGDPGSPGFNGREGPTGRPG
ERGFFGRKGEKGEPYYGGFGVKGEQGSPGLRGPTGETGKPGRDGRPGFPGPPGPPGDGGY
GTIGEKGFPGFAGPKGRPGAPGDPGRGYNGAPGIRGEPGEPGIPGFPGLPGLPGEKGENS
CGGVNDAGEGTGTSIPCTIYGEEGDPGPAGFPGQPGPKGGPGFPGSPGRPGFDGPKGEIG
DPGFGGRPGPQGFPGPRGDPGVPGTPGARVDGTRGRDGIPGRPGPKGPPGEVLGARPGNP
GQDGSPGIPGDKGLPGSPGVPGLPGFDGRPGVPGLKGERGVDGGPGYPGPPGPPGNQTYF
IPGPPGPVGRTGQMGPPGCPGYRGQKGIRGEPGFQGPAGMKGTPGPSGTNGFQGPRGPPG
PPGPGTIDGLPGIPGIKGERGSAGPTGFPGLPGRFGNPGFPGGKGFPGDPGRDGFPGNPG
LIGMRGDRGDTGDPGLPGPTPILRKGPRGDPGQPGSQGFTGPRGEKGLPGLPGRQGSPGR
PGFPVDSKGQPGQPGFPGQPGTPGFPGPKGEGGVMGFPGIPGQRGDDGPPGFPGNPGEFG
RAGPKGLPGETFGYPGAPGLKGQPGDPGFPGSRGNDGVPGDRGFPGSRGFDGLKGLPGDT
GRPGTTGPPGFPGLKGLDGLPGRRGIDGPPGLPGVPGTIGLQGLPGAPGLDGLNGLAGPK
GLPGNPGTVIGGGPGRPGDRGLKGERGVSFPGQPGLPGQKGQRGDTGPFGLPGFPGRPGP
PGRDAVPNVPGPVGDPGLPGLDGEYGFQGPPGPPGPPGPGTTQGDTGDSGLPGFPGPPGR
KGEPGYPGGPGFPGSPGPKGVQGETGRNGGPGQKGNRGEDGFFGTKGRPGSPGRPGRKGA
PGTLLPIDPVDRPIPGDPGYPGDIGGPGFTGEQGRDGAPGRPGPKGRPGPQGNLGRTGSP
GFLGPIGDPGSPGFPGLNGDQGRPGAVGLPGIPGGIGRSVSLGYTLVKHSQSSEVPMCPQ
GMDRLWEGYSLLYVEGQEKAHNQDLGQPGSCLPRFSTIPFLYCNPFETCYFSSRNDKSYW
LSTSAPIPMMPVAEQQIQPYISRCAVCEAPSQAVAVHSQDQSIPTCPRGWRSLWIGYSFL
MHTAAGGEGGGQSLMSPGSCLEDFRATPFIECNGAKGTCHYFANKYSFWLITVDPQREFG
SPPQQETLKGGQERLRVSRCQVCSKIL
NT seq
5124 nt
NT seq
+upstream
nt +downstream
nt
atgagatccctgatctatttgctggttctcggttgtgtgctgacacctacgctcggaggt
ggcaattctgatgagccatgtgcaggcctggactgcagcagagggtgtaagtgcatccca
gagaaaggcagcaggggtcgtcctgggcctcttggcgaagttggacagcctggaccagat
gggccacgtggaggcattgggcctcgggggcctaagggagagaagggccacgttgggata
aaagggccatctggggccaaaggagacaaaggaccaatgggagtgcctggatttcgagga
aatgatggagtgcctggtcaccctggtcagcagggcagcagaggattaccagggaacgac
ggttgtaatggaaccagaggagatcccggaccgcccggctatggcagtgggcttcccggg
ctccctggatttcaaggaccaactgggccaaagggtcagaaaggagaccccgtatatatc
tcagatgacggctctacgggtgtaccaggcccaccgggacccagggggccccctggtttt
agaggtcgtgatggtccacctggtttcccaggtccaagaggacctaacggttatcctgga
ccccctggtcctgctggcccccaagggcccatgggaagccgtggtgacatttataaagga
gggaaaggagaaaagggcgacgtgggtcttcccggacccagtggttctcccggtgacggc
tcgctaagcgctgaaaaagttgtcactatctacaaaggaaataagggtgatccaggacca
aagggacggaaaggagatcctggaaggtttggacctcctggaccttttggttatccaggt
gaatatggggaaaaaggcattcctggatacccaggaccaagaggtccttcggggtttact
ggacctcctggtgctcctggacaagacggattaccgggagatccaggtttcccaggacaa
aacggatttccaggaatcaagggagaaagaggtgaagtcggactcccgggacctgcaatt
tttaacaatggttttggaccttatgttcaaggatctccgggtgatccgggttttcccggt
cgcccaggtgtccgaggcgaccaggggtttcaaggatcggttggacctccaggccctcca
ggcccttttcgcattggtcctccaggatctcctggttttcctggtaacgaaggccaaaaa
ggagaaaagggtgacccaggcgtacctaaatacggccctgagggtttccaaggtctccct
ggacgtcctggacgccctggacctcctggtcctcctggacaaatcaacccaggcccaaac
ccggatccctgtgacatacgtcctccagtcccaaccgcagttccctcccccagaccccaa
ggtccccctggaataccaggaccacctggccaaataggattcccgggagtcaagggatct
aaaggctttagaggtgatcctggtaattgtgaatgtcaaggagaggacagaggtcaacct
gggttacctggacctcaaggacccgttgggagtcctggctttccaggacgtaaaggtgcg
cctggtgacccgggctctcccggtttcaacggacgtgaaggacctactggtcgtccaggt
gaaaggggattttttgggcgtaaaggagagaaaggagagccatactacggtggttttggt
gtaaagggagaacaaggctctcctggacttagaggacctacaggtgaaacaggaaaacct
ggcagagatggacgacctggcttccctggacccccaggacccccaggggatggtggttac
ggcacaataggagagaaaggtttccctggctttgctggacccaaaggccgccccggtgcc
cctggggatcctggccgtggctacaatggagcacctggcatccgaggcgaacctggagag
ccgggcataccagggtttccaggacttccaggtttacctggtgaaaaaggtgaaaacagc
tgtggaggggttaatgacgccggagagggaacgggcactagcataccttgtaccatatat
ggtgaagagggagaccctggtcctgctggttttcctggacaaccaggccccaaaggtggg
ccaggtttcccaggcagccctggacgtccagggtttgatggcccaaagggagagattgga
gaccccggctttggaggacgaccaggaccacaaggttttcccggacctagaggagatcct
ggagttccaggtactccaggagcacgtgttgatggtaccaggggtagagatggcattcca
ggacgtcctggacccaaaggcccacctggagaagttctgggagccagacctggaaatcca
ggacaggatggttcacctgggatacccggagacaagggtctgcctgggagtccaggggta
cccggactacccggttttgatgggagacctggtgtacctggcttgaagggagagcgtgga
gttgatggcggaccgggttatccgggtcctcctggacctccaggaaaccagacctatttc
attcctggtccacctggacctgtgggcaggacaggacaaatgggtcctccaggctgccca
ggttaccgtggtcaaaaggggataagaggagaaccaggattccaggggcctgctggaatg
aaaggaaccccaggaccttctggcactaatggatttcaagggccaagaggaccccccgga
ccaccaggacccggaaccatcgacggactcccaggaataccaggaataaagggtgaaaga
ggctcagctggaccaactggtttccctggactaccaggtcgttttggaaatcctggattt
cctggtgggaaaggatttccaggtgaccctgggagagatggattccctggtaatcctggt
ctgattggaatgagaggtgaccgaggagacactggcgaccctggtcttccaggtcctact
cctattttgagaaaaggtcctagaggtgaccccggacagcccggctctcagggcttcact
ggacccagaggtgaaaagggtcttcctggtctgcctggtcgtcaaggctcacctggtcgc
cctggcttccctgtggatagcaaaggccaacccggacagccggggttccctgggcagccc
ggcacacctggcttccctggaccaaagggagaagggggagtaatgggattccccggcata
cctggacagagaggtgatgatggcccgcctggatttcctgggaatcctggagaatttggt
cgagccggacctaaaggtctacccggagaaacatttggctatcctggagcaccaggactg
aaaggccagccaggggatccaggtttcccaggctctcgaggaaatgatggtgtccccggt
gacaggggctttccaggaagcagagggttcgatggactaaagggtcttcctggtgacaca
ggacggcctggaacaacaggcccacctggttttcctggattaaagggtctggatggactt
cctgggaggagagggatagacgggcccccgggtctacctggagttcctggtactatcggt
cttcaaggtttacccggagctcctgggctggatggacttaatggccttgctggtccaaag
ggcctccctggaaacccaggtacggttatagggggtggacctggcaggcccggtgataga
ggattgaaaggagagagaggtgtttccttccctggacaaccaggtcttcctggacaaaag
ggacagagaggagatacagggccctttgggctgccagggttccctggacgacctggacct
cctggtagggatgcagtgccaaatgttcctgggcctgtgggagaccccggacttcctgga
ttggatggagaatatggtttccaaggtccacctggtcctcctggacctccgggtccaggc
accactcagggagacacaggggactcaggactcccaggtttcccaggacctcctggcaga
aagggagagccagggtatcctggaggtcctggattccctggtagccctggtccgaaagga
gttcaaggtgaaacaggacggaacgggggtccaggtcagaaaggtaaccgcggcgaagac
ggtttctttggaaccaaagggcgtccaggatcacccgggcgacctggacgtaaaggtgct
cctgggaccttgttgccaattgatcctgtagacagaccaattcctggagaccctggatac
ccaggagacattggaggacctggatttactggagagcaggggcgggatggtgcccctgga
cgtccaggtccaaagggtcgtcccggcccccagggcaacctcggcaggactggatcaccc
ggctttcttgggccaatcggggatccaggctcccctggtttcccaggactcaatggagat
caaggtcgccctggcgccgttggtcttcccggtatccctggtggcatcgggcgcagtgtc
agccttggctacactctggtaaaacacagccagtcctccgaggttcccatgtgtccccaa
ggcatggacagactctgggaagggtacagcctgctgtatgtagagggccaggaaaaggca
cacaaccaagacctcggtcagccgggttcatgcctccccagattcagcaccatccccttc
ctctactgtaacccatttgaaacctgctacttttccagccgcaatgacaaatcctactgg
ctctctacttccgcgcccattcccatgatgcctgtggcagagcagcagattcagccatac
atcagcaggtgtgccgtgtgcgaggctccatctcaggcagtggcagtccacagccaggat
cagagcatccctacctgtccccgcggctggaggagtctttggatcggatactccttcctc
atgcacacagcggcgggaggtgagggcggcggccagtccctgatgtctcccggatcctgc
ctggaagacttccgagcgaccccgttcatcgagtgcaacggagccaagggcacctgccac
tacttcgccaacaagtacagcttctggttgatcacagtcgacccccagagggagtttggc
tcgccgccgcagcaggagaccctaaagggcggccaggaacgcctcagggtcagccgctgc
caggtgtgcagcaagatcttgtag
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integrated database retrieval system
