Cyprinodon variegatus (sheepshead minnow): 107100050
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Entry
107100050 CDS
T06110
Symbol
pole
Name
(RefSeq) DNA polymerase epsilon catalytic subunit A
KO
K02324
DNA polymerase epsilon subunit 1 [EC:
2.7.7.7
]
Organism
cvg
Cyprinodon variegatus (sheepshead minnow)
Pathway
cvg03030
DNA replication
cvg03410
Base excision repair
cvg03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cvg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
107100050 (pole)
03410 Base excision repair
107100050 (pole)
03420 Nucleotide excision repair
107100050 (pole)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cvg03032
]
107100050 (pole)
03400 DNA repair and recombination proteins [BR:
cvg03400
]
107100050 (pole)
Enzymes [BR:
cvg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
107100050 (pole)
DNA replication proteins [BR:
cvg03032
]
Eukaryotic type
DNA Replication Elongation Factors
DNA polymerase epsilon complex
107100050 (pole)
DNA repair and recombination proteins [BR:
cvg03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
DNA polymerase epsilon complex
107100050 (pole)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF1744
POL2_thumb
DNA_pol_B_exo1
zf_DPOE_2
zf-DPOE
DNA_pol_B
DNA_pol_B_exo2
RNase_H_2
GARP
zf-RRPl_C4
APP_N
Motif
Other DBs
NCBI-GeneID:
107100050
NCBI-ProteinID:
XP_015253890
Ensembl:
ENSCVAG00000011835
LinkDB
All DBs
Position
Unknown
AA seq
2292 aa
AA seq
DB search
MVLQNSGRYRADRGQPGADQDNQDDGSSMSALKRLERSQFTDDMDARFGFDRIKEPGEKT
GWLINMHPTEILDEDKRMISAVDYYFIQEDGSRFKVALPFKPYFYVATKKNCEREVISYL
SKKFQGKVAKLEIVPKEDLDLPNHLVGLKRNYIKLSFNTVDDLIKVKREISPAVRKNRER
EQSNDAYTSMLSSALAGGSVTSADDDGTLKSIADQLDNIVDMREYDVPYHVRVSIDLKIH
VAHWYNVRYRGSTFPPEIVRRDDLVERPDPVVLAFDIETTKLPLKFPDAETDQIMMISYM
IDGQGFLITNREIVSENIEDFEFTPKPEYEGPFTVFNEDDEAALIQRWFDHVQETKPNIF
VTYNGDFFDWPFVETRAALHGLSMHREIGFQKDSQGEYKSTQAIHMDCLRWVKRDSYLPV
GSHNLKAAAKAKLGYDPVELDPEEMCRMATEEPQTLATYSVSDAVATYYLYMKYVHPFIF
ALCTIIPMEPDEVLRKGSGTLCEALLMVQAFHANIVFPNKQEQIFNKLTDDGHVLDSETY
VGGHVEALESGVFRSDIPCRFKMNPAAFDFLLQRVERTMRHAIEEEEKIPLEQVTNFNEV
CDEIKKKLTSLKDVPNRIECPLIYHLDVGAMYPNIILTNRLQPSAMVDEATCAACDFNKP
GATCQRRMAWQWRGEIMPASRSEFHRIQQQLESEKFPPLFPNGPPRAFHALNREEQAKHE
KKRLADYCKRAYKKVHVTRLEERVTTICQRENSFYVDTVRAFRDRRYEFKGLHKVWKKKL
SAAQDNGDAAEVKRCKNMEILYESLQLAHKCILNSFYGYVMRKGARWYSMEMAGIVCFTG
ANIITQARELIEQIGRPLELDTDGIWCVLPNTFPENFVVKTSNEKKPKVTISYPGAMLNI
LVKEGFTNDQYHELVDPTSLTYNVRAENSIFFEVDGPYLAMILPASKEEGKKLKKRYAVF
NEDASLAELKGFEVKRRGELQLIKIFQSSVFEAFLKGTTLEEVYASVAKVADYWLDVLYS
KAANMPDAELFELISENRSMSRKLEDYGEQKSTSISTAKRLAEFLGDQMVKDAGLSCRYV
ISRKPEGSPVTERAIPLAIFQAEPSVKKHFLRKWLKMPSLHDLDIRSILDWSYYIERLGS
AIQKIITIPAALQQVKNPVPRVRHPDWLHKKLLEKNDIYKQKKISELFTSEGKRQIAHQP
LEAGQTVDMEDFGMPPKPLQPAILISTKRKRVSQGEDSQVESQDVELTQSWREILGPPPP
MGKTREERLVWLRYHKKKWELQLRQRKEKKKRRKLLDGESQPVGGVIRGGPTTGLGSFLR
RTARSILDMPWQIVQIAETNHPGLYKLWAVIGNDLHCMKLNIPRVFYVNQKVPKQDDGGV
AYRKVNRMLPRSNIVYYLYEYSVPEDMYQKHINEINADLSAPDIEGVYETQVPLLFRALV
QLGCVCMVNKHVVRDLAGRETDSFDLAHLEMRSLAQFSYLEPGSVRHIYLYHHSQGQKAL
FGLFIPSQRKASIFVLDTVRSNQMPNLSNLYTAERVALLEKTTEELLPPEKHAFEVRAEN
DIKAISRALQRILLNYKDERRGPTLIAVQSNWELRRLAAGMPVLQEFPVVPVHVVDEISY
NVLDWQRLGARRMIRHYLNLDSCLSQAFDMARYYHLPVGNLPQDVSIFGSDLFLARHLRK
HNHLLWLSPTSRPDLGGKEADDSRLVMENDERGSVEINSQGCYSTACVELDLQSLAVNTI
LQSQHVNDMEGGASLGVSFDVIQQASLEDMMSGNQGASALASYDETALCSNTFRILKSMV
VGWVREITQYHNVYADNQVMHFYRWLRSPSSLLYDPALHRTLHNMMKKVFLQLVAEFKRL
GSTVVYGNFNRIILCTKKRRIDDAVAYVEYITNSIHTKEIFHSLSISFSRCWEFLLWMDP
ANYGGVKGKLPSSILYGEEGAKQKTHKQGDEDEGSEDEDEDAVEEDDGDAETDEVEELIE
SNWNIMHYLPQTASCQKYFLMIISAYIAAVYHSMKEELRRNAPGATPIKRRGGSQASQQA
AGDLSALPGMISFSQEYVASELTQNIFTITQKIQKKVTGTRNVTQTSEMFPVLPGSHLLL
NNPALEFVKYVCQVLSLDANIVNQVNKLKRDLLRLVDVGEFSEQAQFRDPCNSYILPEVI
CHHCNFCRDLDLCKDPSVAQDGSVLPQWFCSNCQMQYETDSIEMALVEALQKKLMSYTLQ
DLVCTKCKGVKEANMPLYCTCAGDFNLTFSAKSFSEQIAVFRNIASHYNMRFLEETIEWL
LVMSPQFSQNRN
NT seq
6879 nt
NT seq
+upstream
nt +downstream
nt
atggttttgcagaacagcggacgatacagagcggacaggggccaacctggagcagaccaa
gacaaccaggatgatggatcttccatgtcggcgctcaagcggctggagcgcagccagttt
accgatgacatggacgcccgcttcggctttgacaggatcaaggaacccggggagaaaacc
ggctggctgatcaacatgcaccccacggagatcctggatgaagacaaaaggatgatcagt
gctgtggactattattttatccaggaggacgggagcagattcaaggtggctctacccttc
aagccttacttctacgtagcaactaaaaagaactgcgagcgagaggttatctcctattta
tccaagaagttccaaggaaaggtggcaaagcttgaaattgttccaaaggaggacttggac
ttgccgaaccatctagttggactgaagagaaactacatcaagctctcgttcaacaccgtg
gacgacctcatcaaagtcaagcgtgagatttctcctgcagtacgcaagaatagagagagg
gaacagtccaacgacgcctacacgtccatgttgtccagcgctctagcaggaggcagtgtg
acctcggctgacgatgacgggacgctcaagagtatcgctgaccagctggataatatagtg
gacatgagagagtatgatgtgccgtatcatgtccgcgtgtccatcgacctcaagattcat
gtggctcactggtacaacgtccgatacagaggcagcacctttccaccagagatagtgcga
agagacgatctagtggaacgcccggacccggttgttttggcttttgatatcgaaaccacc
aaacttcctctgaaattcccagacgcggagacagaccagatcatgatgatctcctacatg
attgacggacagggctttctaatcacaaacagggagatcgtctccgagaacatcgaggac
tttgagttcacccccaaaccggaatatgaagggcctttcacagtttttaacgaggatgac
gaggcggctcttatccagaggtggttcgatcacgttcaggaaactaagccaaacatcttc
gtaacctacaacggagacttctttgactggccttttgttgagacgcgtgcagcacttcat
ggactgagcatgcaccgggaaattggttttcagaaggatagccagggagagtataaatcc
actcaagccatccacatggactgcctcaggtgggtaaagagggacagctacctgcctgta
gggagtcacaatctgaaggcagcagccaaggctaaactaggctacgacccagtggagctg
gacccagaggagatgtgccgtatggcgactgaagagccgcagaccttagcaacctactct
gtgtcagatgccgtggccacatattacctttacatgaaatatgttcaccccttcatcttc
gccctgtgtaccatcatccccatggagcccgatgaggtgctgcgtaaaggttctggtacc
ctgtgtgaagccttgctcatggtgcaggccttccacgccaacatcgtgttccccaacaag
caggagcagatctttaacaagctgacagacgatggtcacgtcctggattcagagacttat
gtgggcggccatgtggaggcgctggagtccggagttttccgcagtgacatcccctgtcgt
tttaaaatgaacccagccgcgttcgacttcctgcttcaaagagtggagaggacgatgcgt
cacgccatcgaagaggaggagaagattcctctggagcaggttaccaattttaacgaggta
tgcgatgaaatcaaaaagaagctgacttccttgaaggacgttccaaacaggatcgaatgc
cccctcatctaccatcttgatgtcggggcgatgtaccccaacatcattctgacaaaccgt
ctgcagccgtcagctatggtcgatgaggccacatgtgctgcctgtgactttaacaaaccc
ggggccacctgccagaggaggatggcgtggcagtggagaggagaaatcatgcctgcaagc
cgcagtgagttccaccgcatccagcagcagctagagtcggagaagttcccccctctgttc
cctaatggtcctcctcgggccttccacgctctgaacagggaggagcaggccaaacacgag
aagaaacgcctcgcagattattgtaagagggcctacaagaaggttcatgtgacgcgattg
gaggagcgagtcaccaccatctgccagagagaaaactccttctacgtcgacacagtcaga
gcattcagggatcgccgttatgaattcaaaggactccacaaagtgtggaagaagaagctg
tcggctgctcaggacaatggagatgctgctgaggtgaaacgctgtaaaaacatggagatc
ctgtatgagtctcttcagctggctcataaatgcatccttaactccttctatggctatgtc
atgagaaaaggagcgcgctggtactccatggagatggctggcatcgtctgcttcactgga
gcgaacatcataactcaggccagagagctcattgaacaaatagggagacccctggagttg
gacactgacgggatctggtgtgtcctccccaacaccttccctgagaactttgtggtaaaa
accagcaatgagaaaaagcccaaagtgacgatctcttacccgggggccatgctcaacatc
ctggtgaaagagggattcaccaatgaccagtaccacgagctggtggacccgacgtcacta
acttacaacgttcgggcagagaacagcatcttctttgaggtggacggaccttatctggca
atgattctgcctgcctccaaagaggaagggaagaagctgaagaagaggtatgctgtgttt
aatgaggacgcctccttggctgagctcaaaggttttgaggtgaagaggagaggtgagctc
cagctcattaagattttccagtcctctgtctttgaggcttttctcaaaggcaccactctg
gaggaggtctacgcttcagtggccaaagtggccgactactggctggacgtgctctatagc
aaggccgccaacatgccagatgctgagctgtttgagctgatctcagagaaccgctccatg
tccaggaagctggaggactacggcgagcagaagtccacgtccatcagcacggcaaagagg
ttggccgagttcctaggggaccagatggtgaaagacgcaggtctgagctgtcgttacgtc
atctccagaaaaccagagggttcccctgtcacagaaagggctattcctctggccatcttc
caggcagagcccagtgtgaagaaacatttccttcggaagtggttaaagatgcccagcctg
catgacttggacattcgctctatcctggattggagttattacattgagaggttgggtagt
gcaatccaaaaaatcatcactatccctgcagctctgcagcaggtgaagaacccagtccca
agagtgaggcatcccgactggcttcacaagaagctgctggagaaaaacgatatatacaag
caaaagaaaatcagcgaactgttcaccagtgagggcaagagacagattgcccaccagcct
cttgaagctgggcaaactgtagacatggaggactttgggatgccacctaaacccctgcag
ccagccatcctcatcagcaccaagaggaagcgggtttctcaaggagaggacagccaggtg
gagtcgcaggacgtggagctcacacagtcctggagagaaatcctgggacctccaccccct
atggggaaaacacgggaggagcgacttgtgtggctgcgttatcacaagaaaaaatgggag
ctgcagctgaggcagagaaaggagaagaagaagagaaggaagctgctggatggagaatcc
caacctgtggggggagtcattagaggtgggcccaccaccggactgggaagctttctgcgc
cgaacagcacgcagcatcctggacatgccatggcagattgttcagattgcagagaccaac
caccctggtctgtataagctgtgggctgtgattggaaacgaccttcactgcatgaaacta
aacatcccgcgcgttttctacgtcaaccagaaggtaccaaaacaggacgacggaggagtc
gcttacaggaaggtgaaccgcatgctgcctcgctccaacattgtgtactacctctatgag
tactctgtgccagaagacatgtatcagaagcacatcaatgagatcaatgctgacctctct
gctccagacattgaaggtgtctatgaaacacaggtccccctgctgttccgtgcattggtg
cagctgggatgtgtttgcatggtgaacaaacatgtggtcagggatctggccggcagggag
accgactccttcgacctggcacatctggagatgaggtctctggcccagttcagctacctg
gaacctgggagtgttcgccacatatatttataccatcacagccaaggtcagaaggctctg
ttcggcctgtttatcccctctcagcgcaaagcaagcatcttcgtcctggacacggtgaga
agcaaccaaatgcccaacctgagtaatctctacacagctgagcgggttgctctcttggag
aagacaacagaggagcttctgcctccagaaaaacacgccttcgaggttcgagctgaaaat
gacatcaaggccatctctcgcgctcttcagcgcatcctgctgaactacaaggatgagcgg
cgagggcctactctcatcgctgtgcagtctaactgggagctgcggcgactggcagctggg
atgcctgtgcttcaggagttcccagtcgttccagtacatgtggtggacgagatcagctac
aatgtgctggactggcaacgcctcggtgcccgccgcatgatccgtcattacctcaacctg
gacagctgcctgtcgcaggctttcgacatggccagatattaccaccttcctgtggggaac
ctgcctcaggatgtgtccatctttggctcagatttgttcctagcgagacatttacggaaa
cacaaccacctgctgtggctttctcccacctcaagaccagaccttggaggaaaggaggct
gatgacagtcgcttggtcatggaaaacgacgagaggggttctgtggagataaactctcag
ggatgttactccacagcttgtgtggagttggacctgcagagtctggcagtaaacacaatc
ctccagtcgcaacatgtcaacgacatggagggtggagccagtctgggcgtcagttttgat
gtgatccagcaggcctcgttggaggacatgatgtcaggaaaccagggtgccagcgctttg
gctagctacgacgagacggcgctgtgctccaacaccttcaggatcttaaaaagcatggtg
gtgggatgggtgagggagatcacacagtaccacaacgtttatgcagacaaccaggtgatg
catttctaccgctggctgcgctctccgagttctctgctctatgacccggcgctgcatcgc
accctgcacaacatgatgaagaaggtgtttctgcagctagttgctgagttcaaacgtctc
gggtcaaccgtggtgtatgggaactttaacaggatcatcttgtgcacaaaaaaacgaagg
attgacgacgctgttgcctatgtggaatacatcaccaacagcatacatacgaaagaaatc
ttccactctctgtccatttccttttcacgatgctgggagttcctgttgtggatggaccca
gccaactacggtggtgtgaagggcaaactgccttccagcattttgtacggggaggaagga
gccaaacagaaaacacacaaacaaggagacgaagatgaaggcagtgaagatgaagatgag
gatgctgtggaagaagatgatggagatgcagagactgatgaggttgaagagctgatagag
agcaactggaatatcatgcattatctcccccaaacagcctcctgtcagaaatactttctc
atgattatatcagcctacatagctgcagtctaccacagcatgaaagaggagctaagacgc
aacgctcctggagcaacgcctatcaagagacgtggaggcagccaggcatcccagcaggca
gccggagacttgagtgcgcttcctggaatgatctccttctcccaggagtacgtggccagt
gagctgacccaaaacattttcactatcacccaaaagatccagaaaaaagttacgggaacc
agaaacgtaacccagacctcggagatgttccccgtcctgcccggttcacatctgctgctc
aacaatccagcgcttgagtttgtcaaatacgtctgtcaggtcctttcactagatgctaac
atcgtgaatcaggtaaacaagctaaagagagacctcctgcgactcgtggatgtgggagag
ttttctgagcaagcccagtttcgtgatccctgtaactcctatatactgccagaagtcatc
tgtcaccattgcaacttctgtcgggacctggatctctgcaaagacccatctgtggcacag
gatgggtctgttttgcctcagtggttctgctcaaactgccagatgcaatatgaaactgac
tctattgagatggcgctggtggaagctctgcagaagaaacttatgagctacactctgcaa
gacctggtgtgcaccaaatgcaaaggggtgaaagaagccaacatgcccctttactgcacg
tgtgctggagacttcaacctgactttttcagccaagagcttctccgagcagatcgcggtc
tttcgaaacatagcttcccactacaacatgagattcctggaggagaccattgaatggctg
cttgtgatgagccctcagttcagccagaacaggaactga
DBGET
integrated database retrieval system
