Cyprinodon variegatus (sheepshead minnow): 107100261
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Entry
107100261 CDS
T06110
Symbol
col10a1
Name
(RefSeq) collagen alpha-1(X) chain
KO
K19479
collagen type X alpha
Organism
cvg
Cyprinodon variegatus (sheepshead minnow)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C1q
BclA_C
Motif
Other DBs
NCBI-GeneID:
107100261
NCBI-ProteinID:
XP_015254166
Ensembl:
ENSCVAG00000006836
UniProt:
A0A3Q2CJU6
LinkDB
All DBs
Position
Unknown
AA seq
657 aa
AA seq
DB search
MMDLRVTSVLFVLLALAEGTPERYYASKVSKVPYPVKSHSVAGAQGPPGPPGEPGPMGPP
GPPGEMGVGHTGPRGPPGPPGAPGHSQAGKPGIPGAPGKPGSPGKPGDRGANGATGPMGP
RGAPGTPGTPGPAGLSATGKPGPAGLPGPMGHRGEPGLKGHPGIPGLPGPKGERGIGVPG
VQGPSGPTGPMGPSGMPGKPGIGKPGATGYPGEPGKSGNPGRDGAPGPMGMPGPKGHTGP
PGVGAPGKPGQNGTPGTPGPMGAKGPQGPAGQPGSPGMPGVGKTGEPGIPGSRGSPGTPG
TTGQKGEPGPTGFTGQPGAPGPIGPAGPQGSRGFMGEPGPVGPKGDIGMVGAPGPRGSKG
EQGAQGFTGKPGVPGAVGPPGIPGHNGAQGPKGSQGHAGSPGSPGANGLPGHKGHTGPPG
APGKSGEPGMPGAPGQVGPPGPSGPPGLKGHQGPPGPPGPAGLTSKGVSGPMGPPGPPGQ
KGHDGRPGPAGPPGPPGPPGEVVYHHEKSMPIKSHEVVMPHEVMKAPMSAFSAVLTMAYP
PAGTPIQFNQILYNGENHYDPHSGVFTCQVPGLYYFSFHMHVNGANALVALYKNEEPMVF
IYDEYNKGFLDQMAGSAVLMLHPGDRVFIQVPDEESNGIFAADNVHCGFSGFLIAST
NT seq
1974 nt
NT seq
+upstream
nt +downstream
nt
atgatggacctgcgagtaacatccgtccttttcgtcctcctggccttggccgagggaacc
cctgagaggtactatgcatcaaaagtgtccaaggtcccctatcccgtcaagagtcacagt
gttgcaggagctcaaggtcctccaggacccccaggtgaaccaggaccaatgggaccacct
ggacctcccggagaaatgggtgtgggacatacaggaccaagaggcccaccgggaccacct
ggagcccctggccactctcaggcaggcaaacctggtatcccaggtgctccaggaaaacca
ggaagccctggtaaacctggtgatagaggtgcaaatggtgcaactggaccaatgggacca
agaggtgcacccggtacacctggaacccctggacctgctgggctttcagctacgggaaaa
cctggaccagcagggcttccaggtccaatgggtcatagaggagagcccggtttgaagggt
catcctggtattcctggtcttccaggcccaaaaggagagagaggtattggtgttcctggg
gtgcagggtccatcaggtccaactgggccaatgggcccatctggtatgcctggcaagcct
ggaattggcaagcctggtgccactggctatcctggagaacctggtaagagtggaaatcca
ggaagagatggggctcctgggccaatgggtatgccaggtcctaagggtcacactggccca
ccaggtgtaggagcaccagggaaaccaggccagaatggtaccccaggtacacccgggcca
atgggggctaagggtccacagggacccgctggtcagccaggctctcctggaatgccaggt
gttggaaaaacaggtgagcctggaataccaggatccagaggatctccaggaaccccagga
accactggtcagaaaggagagccaggcccaactggatttaccggtcaacctggtgctcca
ggtccaataggtccagctggtcctcagggttcaagaggatttatgggtgagccaggccca
gtaggacccaaaggtgatattggtatggtaggcgcaccaggcccaagaggatccaagggt
gagcagggagcacaaggcttcactgggaaaccaggtgttccaggtgcagtaggtccccca
ggcattccaggtcacaatggagctcagggtcctaagggttcacaaggccatgctggctct
ccaggaagtccaggtgcaaatggtctccctggacataagggtcacacaggtcccccagga
gcaccaggtaaaagcggtgaacctggaatgccaggagctccagggcaagttggccctcct
ggtccatcaggtccccccggacttaagggccaccaaggtcccccaggtccacctggtcca
gcaggcctcacatctaagggagtttctggtcccatgggtcccccaggacccccaggacag
aaaggtcatgatggtcgccccggccctgctggccctcctggtccacctggtcccccagga
gaggtagtctaccaccatgaaaagagtatgcccatcaaatcccatgaggttgtgatgcct
catgaagtgatgaaggctcccatgtctgccttcagtgctgtgctgaccatggcctacccc
cctgctggaacccctattcagttcaaccagattctttacaatggagagaaccactatgac
ccccacagtggtgtgttcacctgtcaggttccaggcctttactactttagcttccacatg
cacgtcaatggtgccaatgctttggtggccctctacaagaacgaagagcctatggtcttc
atctatgatgaatacaacaagggcttcctggatcagatggcaggcagcgccgttcttatg
ctgcacccaggcgacagagtcttcatccaagtcccagacgaggagagcaatggtatcttt
gctgcagacaatgttcattgtgggttctctgggttcttaattgcctcaacgtga
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