Cyprinodon variegatus (sheepshead minnow): 107100269
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Entry
107100269 CDS
T06110
Symbol
edc4
Name
(RefSeq) enhancer of mRNA-decapping protein 4 isoform X1
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
cvg
Cyprinodon variegatus (sheepshead minnow)
Pathway
cvg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cvg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107100269 (edc4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cvg03019
]
107100269 (edc4)
Messenger RNA biogenesis [BR:
cvg03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
107100269 (edc4)
mRNA degradation factors
5'-3' decay
Decapping complex
107100269 (edc4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40
WD40_WDHD1_1st
Beta-prop_EML_2
WD40_CDC20-Fz
Beta-prop_TEP1_2nd
WD40_Prp19
WDR55
DUF1722
Motif
Other DBs
NCBI-GeneID:
107100269
NCBI-ProteinID:
XP_015254178
Ensembl:
ENSCVAG00000006107
UniProt:
A0A3Q2DT21
LinkDB
All DBs
Position
Unknown
AA seq
1385 aa
AA seq
DB search
MASNSNIDIEGATQHLRDILKLDRSGSSADVQSSDDQRKLPFNGELNGLLGAGLLGSSMS
DSTRPISTDGSIQETQRICLTGDDGSTSIPITSNNVEIVASQDSGINSKARGSNKVKIQT
LAKYDWEQKYYYGRLIAVSNSFLAYAIRANNHAMVRVLSLNISERSLLKGFTGAVTDLAF
AHLDSSLLGCVDEAGNLMVWQLTLTESKILDQIIVHIQRPEDTPLNSHRRLIWCPFILDD
SEENQDDIGQILALLHEDRAEVWDLEVLRANNSSWPVDAAELRDGLITVKGHNQRLSEGA
LSPDGTVLATASHDGYIKFWQIYIEGGQDQPRCLHELRPHGGRPLSCLLFCDNHKRQDPE
VPFWRFLITGADQNQELKMWCTVSWTCLQTIRFSPDPFNSTVLPSLKASLDLSAEYLILT
DVQRKVLYVMQLRQDLEKGKANFTAVSEFLLTHPVLSFGVRDVTQSRLRHTEVLTAEEES
ESISTEGTQGPAESKSGIQIKLYCVHPKSLQGVQIWFQPNAALNTSGFLPHSDSQEGFAG
FSDHLTDQSSDKDSGSGSQTDLRKIPSLPAPSDFLSNSGPSSGPMPKLMTPDAFMTPSTS
VPASPGSSASSLTIVTATSSNSDSNRAIEDVTQSPSRGDNNNSNSSLGLSVSTSSPRAAS
AVLLPGLEGLQALASPSGPLALESPHVPDSPLLPPLASPTRARSPDVISSASTVMSQDMP
EIATQTLQHQRGHGLEALPLPALQTDSMASAACALHLLTSPRSANNNGLLPLELGGSEVS
PIGPIESESRMGNKPSLLENTLSQENSGGSGGSLDGSVSHTAWPAAPDITRETRNSLRDN
GLGDCSREESSERRLSSPYHPRSHHLTQNDSQDVGADQSDPDDEISSLASSSGNCGSRSS
HRIPVKDWKTSPRSSPKLKRRMKKDDSESSQPRHMDAGQFNAEAQDELLMLLRTQQRDLT
ELWSLVETMPGTIIAQVERVLMKHQEQEQRRLDRVLAESQNHQQQLQEQFTQQLSNTLSS
ALTNRMDKVLREELKKTVPQTISKSMEPVTGQLNNTIAAKLTAVEVTLKDNVIKVVKSKN
TTDAIGRAVSEAMQGPIQAAYKDAFQSTVLPVFERGFQSMFQQINESFKLGTQEYIQQLE
THLKSRKQREQDSRDPVIGQLQQMIDTFQNSTDQLAGNISAAVRTEVQHQMQMVVGNLQD
TILSQVQRIVKGEVNLAMKEQQAVVTSSIMQAMRSAAGTPVPTAHLDYQTQQANILQFLQ
QGQLNQAFQQALSATDLNLVLYVCETIDSQQVFGQTPCPLSQPVLLSLIQQLSSNLTTRS
ELKISYLEDAVMNLDHRDPLTKDHMSSVLSQVRPKLMAFLQQDPHGPLSKRARRLLMMLQ
GLVNH
NT seq
4158 nt
NT seq
+upstream
nt +downstream
nt
atggcgtccaattcgaacatagacatcgagggagcgacccagcacctccgagacatcttg
aaactcgaccgctcgggtagcagcgccgatgtacagtcaagtgatgatcagaggaaacta
ccgttcaacggagagctgaacggcttactgggagcaggactgctgggaagcagcatgtct
gactctaccagacccatctccacagacggcagcatccaggagactcagaggatctgccta
accggtgacgatgggagcaccagtatccccatcacctccaacaacgtggagatcgtggcg
agccaggactctggtatcaacagcaaggctcgcggcagcaacaaggttaaaattcagact
ctcgccaaatatgactgggagcaaaagtattattatggcagactcatagcggtctccaac
tccttccttgcatacgccatcagagccaacaaccatgcgatggttcgggtcctgagtttg
aacattagtgaacgctccttactgaagggattcaccggggccgtcacagacctggctttc
gcccaccttgactcctctcttttgggttgtgtggacgaggcggggaacctgatggtctgg
cagcttacgctcactgaaagcaaaatactggaccagataattgttcatattcaacggcca
gaagacactccactgaactcccacaggcgcctcatctggtgcccgttcatcttggatgac
agtgaggagaaccaggacgacatcggccagattttggctcttctacatgaagacagggct
gaagtttgggaccttgaagtattgagagctaataacagcagttggcctgtcgatgctgca
gaactgagagacggcctaatcacagtgaaaggacataaccagcgactcagtgaaggcgcc
ctgtcccctgatggaaccgtgttagccacagctagccatgatggatacatcaagttctgg
cagatttacatagaaggtggacaggaccagccaaggtgtcttcatgaattacggcctcat
ggaggacgtccgctctcctgtcttctcttctgtgataaccacaagcggcaggatccagag
gttcctttctggaggtttttgataactggagccgaccagaaccaggagttaaagatgtgg
tgcaccgtctcctggacctgcctgcagaccattaggttttctccagatccatttaactcg
acggttttgccaagtctcaaggccagtttagatctttctgctgaatacttgatcctcact
gatgtgcaaagaaaggtcctttatgtgatgcagctgaggcaggacctggagaagggtaaa
gccaatttcactgctgtgtcggagttcctactcactcaccctgtgcttagctttggggta
cgagacgtcacccagagccgactgagacacactgaggtcctgacagccgaggaggagagc
gagagtatttcaacagagggcactcaaggtccagccgagtctaaatctgggatccaaatt
aaactctactgtgtccacccaaagagtttgcagggcgtccagatctggtttcagcccaat
gcagctctcaatacatcaggctttcttcctcattcggactcgcaagagggttttgcaggg
ttttcagaccatctcacagaccagagctccgataaggactctggaagtggctcacagacc
gaccttagaaagatcccctccctccctgctccttctgacttcctgtccaactcggggccc
agcagtgggccgatgcccaagctgatgactcctgatgccttcatgacaccaagcacttcg
gtacctgcgtctcctggtagtagtgccagcagcctgactattgttacagccaccagcagt
aactctgactcaaacagagctatagaggatgttactcagagtcccagcagaggagacaac
aacaacagcaacagtagtttggggctctctgtctccaccagcagcccaagagctgcttct
gcagtgctgctgcctggactagagggcctgcaggctctggcttcccccagtggccccctg
gctctcgagtcccctcatgtcccagattctcccctgctgcctcccttagcctcccccacc
agggcccgctctccagacgtcatctcttccgcttcaacggtgatgtcccaggacatgcca
gagatcgcgacacagaccctgcagcaccagcgcggtcacggcttagaggccttacctctt
cctgctctccagacggacagcatggcttctgctgcttgtgctctgcacctcctgacatct
cctcgttctgctaacaacaacggtttgttgcccctcgaactcggaggcagcgaagtgtcg
cccatcgggccaatagagtcagagtccagaatgggtaataaaccgtctcttctggagaac
acgctgtcgcaggagaactccgggggcagcggagggtcattagatggcagtgttagccat
acggcttggccggcagccccagacatcaccagggaaaccagaaacagcctcagggacaac
gggttgggagactgttcgagagaggagtccagtgagcgccgtttgagttctccctaccac
cctcgctcccaccacctcacacagaacgacagtcaggacgttggagccgatcagagcgat
cctgatgatgagatttctagtctggcttcatcctctgggaactgcggctctcgctcctcc
cacaggataccagtcaaagactggaagacctccccaagaagctcgcccaaactaaagagg
agaatgaagaaagatgacagtgaatcttctcagcccaggcacatggatgctggtcagttt
aatgcagaagctcaggatgagctgttgatgctgctgcgcacccagcagagagacttaact
gaactgtggtcactggtggagaccatgccgggtacaattattgctcaggtggagcgcgtc
ctgatgaagcaccaggagcaggaacagcgcagattggatcgagttctggcagagagtcag
aaccaccagcagcagcttcaggagcagttcacccagcagctgagcaacaccctcagctca
gcgctaacaaacagaatggacaaagtgcttcgagaggagctgaagaaaactgtcccacag
acaatttctaagagtatggaacctgtgacggggcagctgaacaatacgattgcagctaaa
ctgactgcagtggaggttaccctgaaagacaatgtcatcaaggtggtcaaatccaagaac
actacagacgccatcggtcgagctgtgtccgaggccatgcagggccccatccaggctgcc
tataaagacgccttccagagcaccgtgctgcctgtctttgaaagaggcttccagtccatg
tttcagcaaatcaatgaaagcttcaagctgggaacacaagaatacatccagcagctggag
actcacttgaaaagcagaaagcaaagggagcaggactcacgggaccctgtgatcggccag
cttcagcagatgatcgacaccttccagaactccaccgatcagctggccggcaacatatcg
gccgccgtccggaccgaggtccagcaccagatgcaaatggtggtgggaaacctgcaggat
actattctcagccaagtgcagcgaatcgtcaaaggggaggtgaacctggccatgaaggag
cagcaggcagtcgtcacctctagcatcatgcaggcgatgaggtcagcagcgggaacgcct
gtccccactgcgcacctggactaccagacgcagcaggcaaacatcctgcagttcctccag
cagggccagctcaatcaggcctttcagcaggctctgtcagcgactgatctgaatctggtt
ctgtacgtgtgtgagaccatcgactcacagcaggtgtttgggcagacgccctgccctctg
agccagcctgtgctgctctcactcatccagcagctttcctccaacctcaccacccgctct
gagctcaaaatcagctacctggaagacgcagtgatgaacttggaccacagagaccctctg
accaaagaccacatgtcctctgtgctgtcccaggtccgaccaaagctcatggccttcctg
cagcaggaccctcacggcccgctcagcaagagggcgcggcgcctgctgatgatgctgcag
ggactcgtcaaccactag
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integrated database retrieval system
