Cyprinodon variegatus (sheepshead minnow): 107100576
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Entry
107100576 CDS
T06110
Name
(RefSeq) probable ATP-dependent RNA helicase DDX5
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
cvg
Cyprinodon variegatus (sheepshead minnow)
Pathway
cvg03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cvg00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107100576
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cvg03041
]
107100576
03009 Ribosome biogenesis [BR:
cvg03009
]
107100576
Enzymes [BR:
cvg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
107100576
Spliceosome [BR:
cvg03041
]
Complex A
U1 snRNP components
U1 related factors
107100576
Complex B
107100576
Ribosome biogenesis [BR:
cvg03009
]
Eukaryotic type
Pre-60S particles
Helicases
107100576
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
107100576
NCBI-ProteinID:
XP_015254602
Ensembl:
ENSCVAG00000015378
LinkDB
All DBs
Position
Unknown
AA seq
562 aa
AA seq
DB search
MPGFSDRDRGRDRGYGGGPPRFGGGGGNRGGPPQGKFGNPGERLRKRHWNLDELPKFQKN
FYQEHPDVTHRPLQEVEQYRRSKEVTVKGRDCPKPIIKFHEAAFPNYVMDVIVKQNFTEP
TPIQSQGWPVALSGKDMVGIAQTGSGKTIAYLLPAIVHIQHQPFLEHGDGPICLVLAPTR
ELAQQVQQVAAEYGRASRLKTTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKT
NLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRVSCSSGFDRVLNAILLITFFFLCVSDY
RWPAMGIHGDKSQQERDWVLNEFRFGKAPILIATDVASRGLDVEDVKFVINYDYPNSSED
YIHRIGRTARSQKTGTAYTFFTPNNMKQASDLISVLREANQAINPKLIQMAEDRGGRGRG
GRGGYRDDRRDRYSGGGRSNFGGGGYRDNDRGFGNGPKTAFGGSKAQNSGNYGGGNSNPG
GNYGNNYNNTNGQGNFSAPPNQGGFGNQNFQGPPQFGGMQRPAQNGVNHAPFPFNSQPPP
QNQQAPPPPPMVPYPMPPPFPQ
NT seq
1689 nt
NT seq
+upstream
nt +downstream
nt
atgcctggcttttcagacagagaccggggcagagatagagggtatggtggtggacctcct
cgttttggtggcggcggaggcaacaggggaggacctcctcagggaaagtttggaaaccct
ggagaaagactgaggaagagacactggaacctggacgagcttccaaagtttcaaaagaac
ttctaccaggagcatccagatgtcacacacagacctctgcaagaggtcgaacagtatcgt
agaagcaaagaagttacggtcaaaggcagagattgccccaaaccaattattaaattccac
gaagctgcgtttccaaactacgtcatggatgttattgttaagcagaacttcactgaaccg
actccaatccagtcccaggggtggcctgttgctttgagtggtaaagacatggttggcatc
gctcaaactggctctgggaaaaccatcgcataccttctgccagcaattgttcacatccaa
catcagccatttttggagcatggggatggacctatttgcttggtgctggcaccgacccgt
gagctggctcagcaggtgcaacaagttgctgctgaatacggcagggcttctcgtctcaag
actacttgcatctacggtggagcaccaaaaggaccacagataagggaccttgagagggga
gtggagatttgcatcgctaccccaggccgtctcatcgacttcctggagtgtggaaaaacg
aacttgcgtcgttgcacctaccttgtgcttgatgaagcagaccgcatgctggacatgggc
tttgaacctcagatccgcaaaatagtggatcaaattcgggttagttgctcctctggattt
gatagagtactgaatgcaattcttttaataacatttttttttttgtgcgtgtctgattat
aggtggccagcaatgggaatccacggtgacaagagccagcaggagagggactgggtcctt
aatgagttcagattcggcaaagctccgattcttatcgctacagacgtggcctcccgtggg
ttagatgtggaggatgtgaaatttgtcatcaattatgactaccctaactcctccgaggac
tatatccaccgcattggccgcacggcccgcagtcaaaaaacgggcaccgcctacaccttc
ttcacccccaacaacatgaaacaggccagtgacctgatctctgtgctgcgcgaggccaac
caggccatcaatcccaagctgatccagatggcagaagacagaggaggtcgtggaaggggg
ggaagaggtggttacagggatgatcgtcgcgataggtattcagggggcggcagaagtaat
tttggcggtggcggctacagggacaacgatagagggttcggcaacgggcccaaaactgcc
ttcggggggagcaaagcccaaaatagcgggaattacggaggcggcaatagcaatcccggt
ggtaactatggcaacaattacaacaacactaacggacagggtaatttcagcgctccacca
aaccaaggtggctttggcaaccagaacttccaaggcccgcctcagtttggcggcatgcaa
aggcccgctcagaacggcgtgaaccacgcgcctttccccttcaactctcagcctccacca
cagaaccaacaggccccgcccccaccgcccatggtgccctaccccatgccgccaccattc
cctcagtaa
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