Cyprinodon variegatus (sheepshead minnow): 107100757
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Entry
107100757 CDS
T06110
Symbol
ercc2
Name
(RefSeq) TFIIH basal transcription factor complex helicase XPD subunit
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
cvg
Cyprinodon variegatus (sheepshead minnow)
Pathway
cvg03022
Basal transcription factors
cvg03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cvg00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
107100757 (ercc2)
09124 Replication and repair
03420 Nucleotide excision repair
107100757 (ercc2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cvg03021
]
107100757 (ercc2)
03036 Chromosome and associated proteins [BR:
cvg03036
]
107100757 (ercc2)
03400 DNA repair and recombination proteins [BR:
cvg03400
]
107100757 (ercc2)
Enzymes [BR:
cvg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
107100757 (ercc2)
Transcription machinery [BR:
cvg03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
107100757 (ercc2)
Chromosome and associated proteins [BR:
cvg03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
107100757 (ercc2)
DNA repair and recombination proteins [BR:
cvg03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
107100757 (ercc2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD_2
Helicase_C_2
HBB
ResIII
DEAD
SesA
SNF2-rel_dom
DUF8741
UxuA
Motif
Other DBs
NCBI-GeneID:
107100757
NCBI-ProteinID:
XP_015254870
Ensembl:
ENSCVAG00000008926
LinkDB
All DBs
Position
Unknown
AA seq
778 aa
AA seq
DB search
MRLNIDGLLVFFPYDYIYPEQYSYMLELKRTLDAKGHGVLEMPSGTGKTISLLSLIVAYQ
RAFPLEVTKLIYCSRTVPEIEKVVEELRKLMEFYAKETGEVNNFLALSLSSRKNLCIHPE
VSLLRFGKEVDGKCHSLTASYIRAQRHSNPNLPSCRFYEEFDAVGRQVPLPAGIYNLDDL
KDFGRRKGWCPYYLARYSILHANIVVYSYHYLLDPKIADLVSKELAKKSVVVFDEAHNID
NVCIDSMSVNITRRTLDRCQNNVDTLQNTIHKIKETDAAKLREEYRRLVEGLKEANVARE
TDIYLANPVLPDEILQGWHTYSPSIEVLLATALCCFTHVWSSSVKFLNQCLLCSCTSKLS
SLLLNNSPFFFLLCLSSLFTLMVFDADCASRFCAERLQSLLRTLEIADIADFSAVTLISN
FATLVSTYSQGFTIIIEPFEDRTPTIANPVLHFSCMDPSIAIKPVFQRFQSVIITSGTLS
PLDIYPRILDFRPVTMASFTMTLARTCLCPLIVGRGNDQVALSSKFETREDFAVIRNYGN
LLLEMSAIVPDGIVAFFTSYVYMENIVAAWYEQGILENIQRNKLIFIETQDAAETSMALE
KYQEACENGRGAILLSVARGKVSEGIDFVHHFGRAVIMFGVPYVYTQSRILKARLEYLRD
QFQIRENDFLTFDAMRHAAQCVGRAIRGKTDYGLMIFADKRYARADKRGKLPRWIQEHIN
DGSLNLTVDEAVQLSKHFLRQMAQPFRQEDQLGLSLLTLEQLESEEMLQKISQMAHQT
NT seq
2337 nt
NT seq
+upstream
nt +downstream
nt
atgaggctgaacatcgatggtctgctggtgttttttccctatgactacatctatcccgag
cagtactcctatatgctggagctaaagaggactttagatgcaaagggtcatggagtcttg
gagatgccatcaggaacagggaagaccatctctctgctgtccctcatcgttgcttaccag
agagccttccccttggaggtgaccaagttaatttactgctccagaacagttcctgagatc
gagaaagtggtggaggagctcaggaagctgatggagttttatgccaaagaaactggagaa
gtgaacaacttcctggctctttctttatcctccaggaaaaacctctgcatccacccagag
gttagcttgctacgttttgggaaggaggtggatggaaagtgccacagtctgacagcatca
tacattcgggcacaacgccacagcaatcccaacctgccttcctgccgcttctatgaggag
ttcgatgcagtcggtcgacaggttcctcttcctgccgggatctacaaccttgatgactta
aaggactttggcaggaggaaaggctggtgtccgtactatctggctcgctattcgattctt
catgccaacatcgtggtatacagctaccactacctgctggaccctaagatagctgaccta
gtgtccaaggagctggccaagaaatcagtggtggtttttgatgaggctcataatatcgac
aacgtgtgcatcgactccatgagcgtcaacattactcggcgaacgctggaccgctgccag
aacaacgtggacacgctccaaaacaccatacacaagattaaggagacagatgctgccaag
ctgagggaggagtacagacgattggtggagggtctgaaggaagccaatgttgccagggag
accgacatctatctggcaaacccagttttacctgacgagatcctgcaaggctggcatacg
tactcaccatctattgaggtattgttggctacagcactgtgctgcttcacccacgtctgg
tccagctctgtgaaattcctcaaccagtgcctcctgtgcagctgcacgtccaaactaagc
agcctcctcttgaataattcacctttttttttcttgctgtgtttgtcgtcgctctttact
ttaatggtttttgatgctgactgtgcctccaggttctgtgcagagaggctgcagtccctg
ctgcggactctggagatcgcagacatcgcagacttctccgccgttacgctcatctctaac
tttgcaactcttgtcagcacctacagccaaggttttacaatcatcattgagccttttgag
gacagaaccccaaccattgccaaccctgtgctgcactttagctgcatggacccgtctata
gccatcaaaccagtctttcagaggtttcagtcagtcatcatcacatcagggaccctctct
ccgttggacatctacccccgcatcctcgactttcggcctgttaccatggcgtctttcacc
atgacgctggcacggacctgcctctgccctctgattgtcggcagggggaacgaccaggtg
gctctgagctcaaagtttgagaccagggaggatttcgctgtgatccgtaactacggtaac
cttctcctggaaatgtctgccatcgttccggacgggatcgtggcgtttttcaccagctac
gtctacatggagaacatagtggcagcttggtatgagcagggaatcctggagaacatccag
aggaacaagctgatcttcatcgaaacacaagatgcagcagagaccagcatggctctggag
aagtaccaggaggcgtgtgagaacggcagaggagccatcctcctctccgtggccagagga
aaggtgtcagaagggatcgattttgtgcaccacttcggccgagcggtcatcatgtttgga
gtcccatatgtttacactcagagccgcatcctgaaggctcgtctggagtatctgcgagat
cagtttcagatcagagagaacgacttcctgacgtttgacgccatgcggcatgcagctcag
tgcgtgggcagagccatcagaggcaagacggactacggcctcatgatcttcgcagacaag
cgatacgcacgagcagacaaacgtgggaagcttcctcggtggattcaggagcacatcaac
gatgggagcctgaacctcacggtggacgaggccgtccagctctccaagcacttcctccgt
cagatggctcagcctttcagacaggaggaccagctgggtctctctctgttgactctggag
cagctggaatcagaggaaatgttgcagaaaatctcccagatggctcatcagacctga
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integrated database retrieval system
