Cyprinodon variegatus (sheepshead minnow): 107100886
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Entry
107100886 CDS
T06110
Symbol
copa
Name
(RefSeq) coatomer subunit alpha
KO
K05236
coatomer subunit alpha
Organism
cvg
Cyprinodon variegatus (sheepshead minnow)
Brite
KEGG Orthology (KO) [BR:
cvg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cvg04131
]
107100886 (copa)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
cvg04147
]
107100886 (copa)
Membrane trafficking [BR:
cvg04131
]
Endoplasmic reticulum (ER) - Golgi transport
Retrieval pathways
Coat protein complex I (COP-I)
107100886 (copa)
Exosome [BR:
cvg04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
107100886 (copa)
Exosomal proteins of bladder cancer cells
107100886 (copa)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
COPI_C
B-prop_COPA_B_2nd
Beta-prop_WDR5
Beta-prop_WDR3_1st
WD40
WD40_Prp19
Beta-prop_THOC3
WD40_WDHD1_1st
Beta-prop_WDR36-Utp21_2nd
Beta-prop_WDR3_2nd
WD40_CDC20-Fz
WDR55
TPR_COPA_B
Beta-prop_EML_2
Beta-prop_WDR36-Utp21_1st
EIF3I
WD40_Gbeta
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_EIPR1
Beta-prop_TEP1_C
Beta-prop_WDR75_1st
WD40_RFWD3
WD40_MABP1-WDR62_1st
ANAPC4_WD40
WD40_MABP1-WDR62_2nd
Beta-prop_SCAP
Beta-prop_WDR41
Beta-prop_Aladin
Beta-prop_SPT8
Beta-prop_DCAF4
Beta-prop_IFT140_1st
NBCH_WD40
Beta-prop_RIG_2nd
Motif
Other DBs
NCBI-GeneID:
107100886
NCBI-ProteinID:
XP_015255038
Ensembl:
ENSCVAG00000005287
UniProt:
A0A3Q2DRP1
LinkDB
All DBs
Position
Unknown
AA seq
1222 aa
AA seq
DB search
MLTKFETKSARVKGLSFHPKRPWVLASLHNGVIQLWDYRMCTLIDKFDEHDGPVRGIDFH
KQQPLFVSGGDDYKIKVWNYKLRRCLFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIW
NWQSRTCVCVLTGHNHYVMCAQFHPSEDLVVSASLDQTVRVWDISGLRKKNLSPGAVETD
VRGITGVDLFGGSDAVVKHVLEGHDRGVNWAAFHPSMPLIVSGADDRQVKIWRMNESKAW
ELDTCRGHYNNVSCAVFHPRQELILSNSEDKSIRVWDMSKRTGVQTFRRDHDRFWVLGAH
PNLNLFAAGHDSGMIVFKLERERPAYAVHGNMLYYVKDRFLRQLDFNSSKDTAVMQLRSG
SKFPVFSMSYNPAENAVLLCTRATNLENSTYDLYSIPKESDSQNPDAPEGKRSSGLTAVW
VARNRFAVLDRMHSLLIKNLKNEIVKKVQVPSCEEIFYAGTGSLLLRDADGVTLFDVQQK
RSLATVKIAKVKYVVWSSDTSHVALLAKHAIMICNRKLESLCNIHENIRVKSGAWDESGV
FIYTTSNHIKYALTSGDHGIIRTLDLPIYVTRVRGNSVYCLDRECRPRVLTIDPTEYRFK
LALINRKYDEVLHMVRNAKLVGQSIIAYLQKKGYPEVALHFVKDEKTRFSLALECGNIEV
ALEAAKALDDRSCWERLGEAALLQGHHQVVEMCYQRTKNFDKLTFLYLITGNLAKLRKMM
KIAEIRKDMSGHYQAALYLGDVSERVRILKNCGQKSLAYLTAATHGLDEEAEALKETFDP
EKETVPEVDPNAQLLQPPPPINPLDTNWPLLTVSKGFFEGAIAAKGKAGQMAADLDMEAA
GGEGWGDDAELAMDEDGFIDAQDGIGDEGLGKEEGGGWDIDEEVELPPELDVPLGAGGST
EDGFFVPPTKGMSPTQMWCNNSQLPVDHILAGSFETAMRLLHDQVGVVNFAPYKSLFMQT
LSRGRTSYLGLPSLPCLRGHPQRNWKDCGAKQGLPAVGLRLSDLISRLQQCYQLTTAGRF
EEAVERFRAILLSVPLLVVDNKQEIAEAQQLITICREYIVGLTMEVERKKLPKETLDQQK
RICEMAAYFTHCNLQPVHMVLVLRTALNLFFKLRNFKTAAGFARRLLELGPKPDVAQQTR
KILAACEKTLTDTHQLNYDPHNPFDLCAASFVPLYRGRPVEKCPLSGACYCPPYKGQICR
VTQVTEIGKDVIGLRVSPLQFR
NT seq
3669 nt
NT seq
+upstream
nt +downstream
nt
atgttaacaaaatttgaaacaaagtcagcccgtgtcaaaggtctcagcttccaccccaaa
aggccatgggttctggcaagtttgcacaacggtgtcatccagctgtgggactaccggatg
tgcacactgatcgacaaatttgatgagcacgatggtcccgtcagaggaattgatttccac
aagcagcagcctctctttgtctccggaggagatgactacaagattaaggtgtggaactac
aagctgagacgttgtctctttacccttttggggcacctggattacatcaggaccaccttc
tttcatcatgaatatccctggattctgagtgcctcagatgatcagaccatccgcatctgg
aactggcagtcaaggacctgtgtatgcgtcctgacgggacataatcactacgtgatgtgt
gcccagttccatccatctgaagacctggtggtgtctgccagtctggaccagaccgtgcga
gtgtgggatatctccggtctcaggaagaagaatctgtctccgggcgccgtggagactgac
gtgcgcggcatcacaggcgttgacctgttcggtggctccgatgctgttgtgaagcacgtc
cttgagggacacgaccgtggggtcaactgggctgctttccaccccagcatgcccctcatc
gtgtctggagctgacgaccggcaggtcaagatctggagaatgaacgagtccaaggcatgg
gagctggatacatgccgcggccactacaacaacgtctcctgcgccgtcttccatccgcgt
caggagctcatcctttccaactctgaggacaagagcatccgggtgtgggacatgtccaag
cggaccggagttcaaacatttcggcgtgatcatgatcgcttctgggtcctgggggcccat
ccgaacctcaacctgtttgcagccggtcatgacagtggaatgatcgtatttaagctggag
cgtgagcgtccagcctacgccgtgcacggcaacatgctgtactatgtgaaggaccgattc
ctccgccagctggacttcaacagcagcaaggacactgctgtcatgcagctccgcagcggt
tctaagttcccagtattcagcatgtcttataacccagctgagaacgccgtcctgctctgt
acaagagcaaccaacctggagaacagcacatacgacctctactccattcccaaagaaagc
gactctcagaaccctgatgctccagagggaaaaagatcatcaggcctgactgcagtttgg
gtggcgaggaaccgatttgcagtcctggatcgcatgcactctcttctgatcaaaaacctg
aagaatgaaatagtgaagaaggtccaggtgccgagctgcgaggaaatcttctacgccggc
acaggatcgctgctgctgcgcgatgccgacggcgtcacgctgttcgacgtgcagcagaaa
cgctctctggccacggtcaaaatcgccaaggtcaagtatgtggtgtggagctccgacacc
agccatgtggctctgctggcgaaacatgcgatcatgatctgcaaccgtaagctggaaagt
ctctgcaacattcatgagaacatcagagtgaagagtggagcctgggatgaaagtggggtc
tttatttataccacatccaaccacatcaaatatgccctcacctcaggtgatcatggcatc
atccggaccctggacctgcccatctatgtgacccgagtcagaggcaacagtgtttactgc
ctggacagggagtgcaggccgcgggtgctcaccatcgaccccacagagtaccgcttcaag
ttggctctgatcaatcgtaaatacgacgaggtgctccacatggtgcgtaacgccaagttg
gtggggcagtccatcattgcctaccttcagaagaagggctaccctgaagtcgcgcttcac
tttgtgaaagatgagaaaacgcggttcagcctcgctctggaatgtggaaacattgaggtg
gcactggaggcagccaaggccctggatgatcgcagctgctgggagcgtctgggtgaggcg
gcgctgctgcagggacaccaccaggttgttgaaatgtgctaccagaggacaaagaacttt
gacaagctcaccttcctttacctgatcactggaaacttggctaagctgcgcaagatgatg
aagatcgctgagatcagaaaggacatgagtggtcactaccaggctgctctgtatctgggg
gacgtcagtgagagggtccgcatcctgaagaactgtggacagaagtctctggcttacctc
actgcagccacacatgggctggatgaagaggctgaggccctaaaggagacctttgaccca
gaaaaggagacggtgccagaggtcgaccccaatgcacagctgctgcagcctcctccaccc
atcaaccctctggacactaactggcccctgctcactgtatcgaagggcttctttgaggga
gccattgcagctaaaggtaaagcaggtcagatggctgcagatttggatatggaggctgct
ggtggtgaggggtggggagatgatgctgagctcgccatggatgaagatggcttcattgat
gcacaggatggtataggggatgaaggcttagggaaggaggaaggaggaggatgggatatt
gatgaagaagtggaacttcctccagagctggatgttcctctgggcgctggtggatcgaca
gaggacggcttctttgtgccgccaaccaagggcatgagtccaactcagatgtggtgcaac
aattcccagctgccagttgatcacatcctggctggatcctttgaaactgctatgaggctt
cttcatgaccaggttggagttgtgaactttgctccgtacaagtccctgttcatgcagacg
ctgtctagagggcggacctcttacctggggctgccgtctctgccgtgtctgcgcggccat
cctcagaggaactggaaggactgtggggcgaagcagggcctgcctgctgtggggctccgc
ctctccgacctgatttcccgccttcagcagtgctaccagctgactactgctggaaggttc
gaggaagcggttgaacgcttcagagccatcttgctttctgtccctctgctggtggttgat
aacaagcaggagatagcagaggctcagcagctcatcaccatatgcagagagtacattgtg
ggtctgactatggaggtggagaggaagaagttgcctaaagaaacgttggatcaacagaag
aggatttgtgagatggctgcttatttcacccactgtaacctgcagccagtccacatggtg
cttgtgctgcgcacagccctgaacctcttctttaagctccgcaacttcaaaacagctgca
ggatttgcacgccgtctcttggagctcggcccgaagccagatgttgcacagcagacccgc
aaaatattggcagcttgtgagaagaccctgacagacacccaccagctgaactacgacccc
cacaatccttttgatctgtgcgccgcctcctttgttcctctctaccgaggacgtcctgtg
gagaagtgcccactgtctggagcctgctactgccctccttataaaggccagatctgcagg
gttacacaggtgactgagattggcaaggatgtgattggtctgcgtgtgagcccactccag
tttcgttaa
DBGET
integrated database retrieval system
