Cyprinodon variegatus (sheepshead minnow): 107100928
Help
Entry
107100928 CDS
T06110
Name
(RefSeq) laminin subunit alpha-1-like
KO
K05637
laminin, alpha 1/2
Organism
cvg
Cyprinodon variegatus (sheepshead minnow)
Pathway
cvg04510
Focal adhesion
cvg04512
ECM-receptor interaction
cvg04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
cvg00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
107100928
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
107100928
09142 Cell motility
04820 Cytoskeleton in muscle cells
107100928
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Laminin_G_1
Laminin_G_2
Laminin_II
Laminin_G_3
DUF745
Transcrip_act
Hepar_II_III
Abc1-like
Fib_alpha
DUF2344
Motif
Other DBs
NCBI-GeneID:
107100928
NCBI-ProteinID:
XP_015255096
LinkDB
All DBs
Position
Unknown
AA seq
1286 aa
AA seq
DB search
VGLQNLTSEVLSVDRLLEDSQDLLEDTLSLAADFSNRSAVELLASQLDQWRPQLRKHVEA
LVVGLKMTDALENVHRAERHACQLKRHADLLHRSMFNVSHNDTQTAHSEDDITQLVGSAH
QEASAGLNSALLALNMSVQSGRRLSEEGGATLNISSHVLEESRQLNITAEDLQISVSMVT
TRLRLVRDGVLNSSALLRQPISELQRLPIGSSRSTKQAEVQAGAANSSLQGAMQRLQRLR
QQLENSSSVVEKTNITVRETNSLMSRVQTAANEVQRHLEEAEHRTQHLMERVKPLSVLRE
TLSRNLSDIRELIDQARRQAASIKVAVQADRDCVRTYKPPIQSSNFNTLSLILKTSHQNN
LLFYLGSNITKDFLAVEMHHGKVSLLWDLGSGTGRLHFPQTFITNNRWTKINVTRFGARA
SLSVHQLDSESPPLPAVTSLSPGTSRVLDIDRNTVIHIGGMGANSQAPPVLHTSSFQGCL
GEASLNEENIGLWSYYRREGKCGGCFSSPQAEETSFYFDGSGYSVVQKSLRATSTSVVLL
FKTLSPGGLLLYLASNNTKDFLSLELVEGHVRLAFDLGSGALIMTSSRKYNTGIWYKVTL
QRNKRKGYLSIMAAGQPSVKEVLEAESPGTASDLNRYDLDPIYIGGFPSSRPIRRQVLSR
TYVGCIKNVEIARSNFDLLMDAYGVRKGCVLKAVRSVSLLSGGFVQISPSSLSKEAEILF
TFSSNNQSGVLLAGFGDDRPHRQHFLSLHLVSGKVVAELGELGGAARRVSLTKSDGESFC
DGREHSVIMTLNRKSLSLQVDDEHPKSVSLPGGLSRLSLSSVFIGGIPPEKEPRLPVGLQ
ALSQQFRGCIQHLVMGGALVDLSVAIRYEGVEFNSCLLEKSPLRLVDPEDPVVEPTPAPA
DALLAPPTHLSALTAEALTCASDQEPSFLPSAAQFGSSRHSHMTFIINPSTLRKSVSVRM
SVRSHVLDGLMLLLSDSKQMDFVALSLIGGKVRLSADLGKGPSSVESSAAVSDGRWHTLS
AEVSQRSVSVTVDTLRPASVSIKGNHLDVERTLFLGGFPNGVNSRRIGVSSGFSGCIQSV
SLNGATLDLSKPISQLDVTSCFTRDQRGSYFNGSGHAELMHDGYKVGADMSVSVEFRTSQ
SEGVFLGISSPKVDAVGLEMIDGQVVFNVNNGAGRVSVRSADRMLCDGQWHHLLARKTKH
TLTLMVDGRKYSTPNPYPQSTSAETNNPVYLGGYPAGVKQNCLTVRTRFRGCLRNLQLTK
PHLSNHLDLSTAHFLLGVTPNSCPAA
NT seq
3861 nt
NT seq
+upstream
nt +downstream
nt
gtgggtcttcagaacctgacttctgaggttctgtctgtggacagactgctggaggacagt
caggacctgctggaggacaccctgagtctggctgcagacttctcaaaccgcagcgcagtg
gagctgttggccagccagctggatcagtggcgccctcagctcaggaagcacgtggaagcc
ttggtggttggcctgaaaatgaccgacgctctggagaacgtccaccgcgcagaacgccac
gcctgccagctgaaacgccacgccgacctgctgcatagatccatgttcaacgtgtcccac
aacgacacccagacggctcattcagaagatgacatcactcagctagttggctccgcccac
caggaagcctcggcgggccttaactctgccttgcttgctctcaacatgagcgtccaatca
gggcgcaggctgtcggaagagggcggagccacgctgaacatctcatcccatgttttagaa
gaaagtcggcagctcaacattacagctgaagacctgcagatcagtgtttccatggtaacc
accagactgcgattggtcagagacggggtgcttaactccagtgctctgctccgccagcca
atcagtgagctgcagaggcttcctattggctcatccaggtccaccaagcaggcggaggtt
caggctggagcagcaaactccagcctgcagggggcgatgcagaggctgcagagactcagg
cagcagctggagaattcttcttctgtggtggagaagaccaacatcaccgtgagggagacc
aacagcctaatgagtcgggttcagactgcagctaacgaggtgcagcgccacctagaggag
gcggagcatcgcacacagcatctgatggaaagagtaaagcccctgagcgtgctaagagaa
accctgagcaggaatctgtcggacatcagggagctgatcgatcaggcccgaagacaggcg
gcatcgatcaaggtggcggtgcaggcagacagggactgtgttcggacctacaaaccacct
attcagtccagtaacttcaacactctgagtctgatcctgaagacgtcccatcaaaataac
ctgctcttctacctgggaagcaacatcacgaaggacttcctggcggtagagatgcatcat
gggaaggtttcgttgctgtgggacctgggctctggcacaggacggctgcacttccctcaa
acgttcatcacaaacaaccgatggaccaaaatcaacgttaccaggttcggagcacgcgcc
tctctctccgtccatcagctggactctgagtcgccccctctgccggcggtgacgtcgctt
tcaccgggaacatcccgggttttggacatcgacagaaacacggtgatccacatcggagga
atgggagccaacagtcaggctcctccagtgctgcacacatcttccttccaaggatgcctg
ggtgaagcttcgctgaatgaggagaacattggtctgtggagctactaccgccgggagggg
aagtgtggaggctgcttcagcagtccccaggcagaggagacgtctttctacttcgatggc
tctggatattctgtggtccagaagtctctgagagccacgtccacctccgtggtgctgctg
tttaaaactttgtctccaggtggactgctgctgtacctggcctccaacaacacgaaggac
ttcctgtctctagaactggttgaggggcatgtccgtctggcatttgacctgggctcaggt
gctcttatcatgacctccagcagaaagtacaacacaggaatttggtacaaggtcaccctg
cagaggaacaagcgcaaaggttacctttccatcatggcagccggccagccatcggtgaag
gaggtgttagaggcggagtctccaggaacggcctctgacctcaaccgctatgacctggac
ccgatctacataggaggattcccttcttccagacccatcaggcgacaggtgttatcccgg
acgtatgttggatgtattaaaaacgtggagattgctcgctccaactttgacctgctgatg
gacgcttatggagtccggaagggctgcgtcctaaaggcggtgcggagtgtctctctgttg
tctggaggcttcgttcagatcagcccttcgtcactcagtaaggaggcagagatcctcttc
accttctcctccaacaaccaatcaggagtcctcctggcaggcttcggtgacgaccgacct
caccggcagcacttcctgtccctgcacctggtctcaggtaaagtggtggcggagcttggc
gaactgggcggagccgcgcggagggtttcgctcacaaagtccgatggagaatcattctgc
gatggaagagagcactcagtgattatgactttgaacaggaagtctctgtccctgcaggtg
gacgatgaacacccgaagtctgtctctctgccgggaggattgtctcggctgtctttgtcc
tccgtcttcatcggtggaatccctcctgagaaggagccccgcctgccggtcggactgcaa
gctctgtcccagcagttcagaggctgtattcaacacctggtgatgggcggagcgcttgtt
gacctatcagtcgccatcaggtatgagggggtggagtttaacagctgcctgttggagaag
agccctttgaggttggtagatcccgaagaccctgttgtggaaccaacacctgcacctgca
gacgctcttttagccccgcccacacatctgagcgccctcactgctgaagcgttaacgtgt
gcgtcggaccaggaaccttccttcctgccttcagctgctcagttcggttcatccaggcac
agtcacatgaccttcattatcaaccccagcacacttagaaagagcgtatcggtgaggatg
tcggttcgaagccacgttctggatggcctgatgctgctcctctccgactccaagcagatg
gactttgttgccctcagtcttataggggggaaagtcaggctgtcagccgacttggggaaa
ggcccctcctccgtcgagtcgtctgccgctgtcagcgatggacggtggcacacgctgagc
gccgaggtgagccagaggtccgtctcagtgacggtggacactttacgtccagcatctgtc
tccatcaaagggaaccacctggatgtggaaaggacacttttcctcggaggttttcctaat
ggtgtgaacagcaggaggatcggggttagctccggtttctcaggttgcatccagtccgtc
agtctgaacggcgccacactggatttgtccaagcccatctcgcagcttgatgtcacttcc
tgcttcaccagggatcagagaggaagttacttcaatggcagcggacatgctgaactgatg
catgatgggtataaggttggtgccgatatgtcggtgtctgtggagttccggaccagccaa
tcagaaggagtctttttgggaatcagcagtccaaaagtggatgcggttggactggagatg
attgacggccaggtggtcttcaatgtgaacaacggcgcaggtcgggtgtcggtgcgctcc
gctgaccggatgctgtgtgacggacagtggcaccacctgctggccaggaagaccaagcac
accctgactctgatggtagatgggaggaaatacagcacccccaacccctacccacaatcc
acctctgctgagaccaacaacccagtgtacctggggggttatccagctggagtcaaacag
aactgcctgaccgtcaggaccaggttcagggggtgtctgaggaacctgcagctcaccaag
cctcacctgagcaaccacctggatctcagcaccgcccacttcctgctgggcgttactccc
aattcatgccccgctgcatag
DBGET
integrated database retrieval system
