KEGG   Cyprinodon variegatus (sheepshead minnow): 107101235
Entry
107101235         CDS       T06110                                 
Symbol
polr2i
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB9
  KO
K03017  DNA-directed RNA polymerase II subunit RPB9
Organism
cvg  Cyprinodon variegatus (sheepshead minnow)
Pathway
cvg03020  RNA polymerase
cvg03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:cvg00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    107101235 (polr2i)
  09124 Replication and repair
   03420 Nucleotide excision repair
    107101235 (polr2i)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:cvg03021]
    107101235 (polr2i)
   03400 DNA repair and recombination proteins [BR:cvg03400]
    107101235 (polr2i)
Transcription machinery [BR:cvg03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     107101235 (polr2i)
DNA repair and recombination proteins [BR:cvg03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      107101235 (polr2i)
SSDB
Motif
Pfam: Zn_ribbon_RPB9 Zn_ribbon_TFIIS Ogr_Delta Zn_ribbon_recom Cas12f1-like_TNB Zn_Ribbon_TF Zn_ribbon_GRF_2 Zn_ribbon_NrdR GpA_ATPase Lar_restr_allev SR1P Zn_ribbon_Top1 HVO_0758 Zn_Ribbon_1 DZR
Other DBs
NCBI-GeneID: 107101235
NCBI-ProteinID: XP_015255551
Ensembl: ENSCVAG00000014797
UniProt: A0A3Q2D208
LinkDB
Position
Unknown
AA seq 126 aa
MDIDVGTHEPGFVGIRFCQECNNMLYPKEDKENRILLYACRNCDYQQEADSSCIYVNKIT
HEVDELTQIIADVAQDPTLPRTEDHPCPKCGHKEAVFFQSHSMKAEDAMRLYYVCTAPHC
GHRWTE
NT seq 381 nt   +upstreamnt  +downstreamnt
atggatatagacgttggaacacacgagccgggatttgttgggatacgattttgtcaggaa
tgtaacaacatgttgtatccaaaggaagacaaagagaaccgcatcctgctgtatgcgtgt
agaaactgtgactatcagcaggaggctgacagcagctgcatctatgtcaataagatcaca
cacgaagttgatgaattgactcaaatcatcgctgatgtagcccaagatcctacgttaccg
agaacagaggatcacccctgtccaaaatgtggtcacaaggaggcagtgttcttccagtct
cacagtatgaaggctgaggatgctatgcgtctgtattacgtctgcacggctcctcactgt
ggacaccggtggacagagtag

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