Cyprinodon variegatus (sheepshead minnow): 107102001
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Entry
107102001 CDS
T06110
Symbol
rb1cc1
Name
(RefSeq) RB1-inducible coiled-coil protein 1
KO
K17589
RB1-inducible coiled-coil protein 1
Organism
cvg
Cyprinodon variegatus (sheepshead minnow)
Pathway
cvg04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
cvg00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
107102001 (rb1cc1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
cvg01009
]
107102001 (rb1cc1)
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cvg04131
]
107102001 (rb1cc1)
03029 Mitochondrial biogenesis [BR:
cvg03029
]
107102001 (rb1cc1)
Protein phosphatases and associated proteins [BR:
cvg01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
107102001 (rb1cc1)
Membrane trafficking [BR:
cvg04131
]
Autophagy
Autophagosome formation proteins
ULK complex
107102001 (rb1cc1)
Mitochondrial biogenesis [BR:
cvg03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-independent mechanism factors
107102001 (rb1cc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ATG11
ATG17_like
TBK1_ULD
ubiquitin
Motif
Other DBs
NCBI-GeneID:
107102001
NCBI-ProteinID:
XP_015256611
Ensembl:
ENSCVAG00000006258
UniProt:
A0A3Q2FK00
LinkDB
All DBs
Position
Unknown
AA seq
1612 aa
AA seq
DB search
MKLYVFQVNNGSTLTFDTDLAVQTVLELKHAIYAKYKVAVQHQVLVVNGGECMAADRRVC
SYSAGTETNPIFLFNKEMILSDRDPTIPKTTFSIESEIQVKVEESLLMPAVFHTVASRTQ
LALEMFEVAKKLCSFCERLVHDEHLQHQGWAAIMANLEDCTLSYQKLLMKFNTAYTNYQQ
DLEEIKIKLSKLGTSVSVMARIPLLECLTRHSYRESIEKSSSTPEKDSDETEEEKSTDSV
LCATQALTSSKSSPPSFATGNAPCEPEGDQETNKMTESGGLTAALLDDNTPELPCQSSFN
VTLLDWINVQDRPNDVESVVRKCFDSINRLDPRIIQPFLADCRDTIAKLDNQNMKSIKGL
EDRLYALDQMIASCKKLVNEQKELAQGFLANQKRAENLKDTSVLPDLCLSHTNQLMIMLN
NHRKLLDIKKKCTTAKQELANNLQVRLKWCCYVMLHADQDGEKLQALLRLLTELIERVRV
VDALSTVPQMYCLAVVEVVRRKMFLQHYREWADALVKDGKRMYEAEKFKRESFGKLFRKS
FLRNRLFRGLDSWPPTSFCTRKPRRFDDELPDISLDDLQYLKSCCPVEVQPFLMIPAMCD
FEPLNRHVETLHKLVQAAQSVDEMSRTITDLLSEQRASCSQSTQRSTAQTPQAESRPGTT
TPVPSKTPLSLSLQGPGCQPLHVPVPAPLEDLSPDSIDAQTFDFETIGHPNMDPVLQQGS
LDLDSLAESPESDFMSAVNEFVIEENMTSPNPISDPTSPEMMVESLYSSVINAIDNKRMQ
DTTTLEKENSRIASLKNALEQYRCTAEESHSNLRRVKDDLLYLRSSVLKEQQDFGLALCS
MAAEVRSTVEQISQSHKIESNEQHKQELLLVRQQLEKQVQELTQENQVNQNIVRDVQRAM
LELEGLMERKEKELTQLESERERWIEKERNFADKIKNLEQLHCDQTEEIKTLSTSKDSLA
TQLENLHFEIERSQQKIRQELEAVSQCHLKELEDKLVQEHKKELDSLNKNNKEALEHLTE
ENSTKLTEAADHHASAIKDKDSQIKEMEARLTELAELRCRLEVELALKESETEEVRILFE
EAKMQQAEAVKNQVEAETKVLRDELTDLKRKLEAKNEEYEVDLAELRTLMRIEKDHCISE
LVDRHEEEALMLHGKISALQQHSQDLNKYHEQQQETLREELAALSEDKEKQFRSFQELEQ
ELRTVIKNLQAENDLLSKNLEQERRAAQKEEASNVVSMEAFKELEQQKEEMEKRLLEKNR
QLENELHEKKLSESEEGMPLHAEDRAGAAAPLSLDSALQERLQQERASLQSQIELLEKQK
KEEIQNLKTSLIAEQQTNFNTVLTREKLKKEQIINDLTEKLRKVTQQQEKDKALIETLSE
DRASMMQEKKQLEEELNRLRNSALVSSAFFPSNSAQDLSEAGAAGRALPIAGACSPETPA
EMDRLAPVATFRDDEHVDSAVEASLVAADDTMMSEEKQRIMLLERTLHMKEEENKRLSQR
LMSQSMSSMSSRHSDKIAIRDFQVGDLVLIILDERHDNYVLFTVGPTLYFLHSESLTALD
LKPASGTSRRPWVLGKVMEKEYCQAKKAQNRFKVPLGTKFYRVKAVPWNRKV
NT seq
4839 nt
NT seq
+upstream
nt +downstream
nt
atgaagctgtatgtgttccaggtcaacaatggcagcacattaacatttgacaccgatctt
gctgtccagactgtactggagcttaaacatgccatctatgccaaatataaagtcgcagtt
cagcatcaggtccttgttgtcaatggaggggaatgtatggctgcagacagacgggtctgc
agttacagtgctggcactgaaaccaaccccatatttctgttcaacaaagagatgatctta
tctgaccgtgatccgacaatcccaaaaaccaccttctcaattgaaagtgagattcaggtt
aaggtggaagagtcattactgatgccagctgtttttcacaccgttgcctcacgaacacaa
cttgctctggaaatgttcgaagttgccaaaaaactttgctccttctgtgaacgtttggtt
catgatgagcatctccaacatcaaggctgggcagccatcatggctaatctggaggactgc
accctgtcctatcagaagttgctcatgaagttcaacactgcatacacaaattaccaacag
gacttagaagaaattaaaattaaactttcaaagttagggacctcggtttctgtaatggcc
aggatacctctgctggaatgtttgacgagacacagttacagagagagcatcgagaagtcc
agttcaactccagagaaagattcagatgagaccgaagaggaaaaatccacagactccgtc
ctctgtgctactcaagccctgacatcctctaaatcatcgccaccctcgtttgcaaccggg
aacgccccatgtgagccagagggagaccaggagactaacaaaatgactgagagcggtgga
ttgacagcagcacttttagacgataacactcctgaactcccctgccagtcttctttcaac
gtgacactattggactggatcaacgtgcaagacagacctaatgacgtggaatcggtggtg
aggaaatgctttgactccatcaacaggcttgaccctcggattatccagcctttcctggca
gattgccgggatacaattgcaaagctagataatcagaacatgaaatccatcaaagggctt
gaagacaggttgtatgctctagaccaaatgattgcaagctgtaagaagctggtgaatgag
caaaaagaacttgctcagggttttttggccaatcagaagcgagctgagaacctgaaagat
acatccgttttgcctgacttgtgtctgagtcacacaaaccagctgatgattatgctgaac
aaccacaggaagctgctagacattaagaagaagtgcaccacggccaaacaagagctggca
aacaaccttcaagtcagactcaaatggtgctgctacgtgatgctccacgcagatcaggac
ggggaaaagcttcaggctcttctgcgacttctgactgagttaatagagagagtgagggtg
gtggatgccctcagcactgtgccccagatgtactgcttggcggttgtggaagttgtcagg
aggaagatgtttctgcaacactacagagagtgggcggacgcccttgttaaggatgggaaa
cgaatgtatgaggcggaaaagttcaaaagagaatcctttggaaaactcttcaggaagtct
tttctccgaaatcgattgtttagaggacttgattcttggcctccaacttcgttttgtacg
cgtaaacccagaaggtttgatgatgaacttccagacatctcacttgatgacctgcagtac
ttgaaatcgtgttgtcctgttgaggtgcagcctttcctaatgattcctgccatgtgtgac
tttgagcccttaaatcgccatgtagaaacacttcataagctggtccaagccgcgcagagt
gtcgacgaaatgtctcgaactatcactgatctattgagtgaacaaagggcatcctgtagt
cagagcactcaaagatcaacggcacaaactccacaggctgagagcaggcctgggaccaca
actccagtgccctccaaaacacctctctcacttagccttcagggaccaggctgccagccc
ctccatgtacccgtgccagctcctttagaggatctctccccagacagcattgatgcacaa
acatttgattttgaaaccataggccatccaaacatggatcctgtcctgcagcagggatcc
ctggacttggattctcttgctgaaagccctgaatccgattttatgtctgctgtcaacgag
tttgtgatcgaagagaatatgacctcccctaatcccatcagtgaccccactagccctgaa
atgatggtagagtcgctgtactcctcagttattaacgccattgacaacaagcgaatgcag
gacaccactacgctggagaaggagaactcaaggattgctagcctgaaaaatgctcttgaa
cagtacagatgcactgcagaggagtcccactccaacctaagacgtgtaaaggatgacctc
ctttacttaagaagttcagtcttaaaagaacagcaggattttgggttggcactgtgcagc
atggccgcagaagtgcgcagcactgttgaacaaattagccagagtcacaaaatcgagtca
aacgagcagcataaacaggagcttctcctcgttcggcagcagctggagaagcaggttcag
gagctgacccaagaaaaccaagtaaatcagaatattgtgcgagatgtccaacgtgcgatg
ctggagctggagggccttatggagcgcaaagagaaagaacttacacagctggaaagcgag
agggagcgatggattgaaaaagagagaaactttgctgataagataaaaaatcttgaacag
ctccactgcgatcaaaccgaagaaatcaagacgctttcgacttcaaaagattctctggcg
actcagcttgaaaacctgcattttgagattgaacggagtcagcagaaaatcagacaggag
ttagaagctgtgtctcagtgccatttaaaagagttggaggataaactggtgcaggagcac
aaaaaagagctagatagcctgaataaaaataataaggaagcgctggaacatctcactgag
gaaaatagtacaaaattaaccgaggcagctgatcaccacgctagcgccattaaagacaag
gacagtcagatcaaagaaatggaagctcggctgacggagcttgcagaactccgttgtcga
ctagaggtagagctggccctcaaagagtctgagacagaggaggtgaggatcttattcgaa
gaagccaagatgcaacaggcagaagctgtaaaaaaccaagtggaggctgagaccaaagtg
cttagagatgagctgacagatctcaagaggaagcttgaagctaaaaacgaggagtatgaa
gtggacctagcagagctgaggactctgatgaggattgaaaaggaccactgcatctcagag
ctggtggacagacatgaggaagaggctcttatgttgcacggcaaaatctccgccctacag
cagcactcccaggatcttaataaatatcacgaacagcaacaggagacgcttagagaggag
cttgctgccctgagcgaagacaaagaaaagcagttcaggagtttccaggagcttgagcag
gagttgaggactgttatcaaaaatttgcaggcagaaaatgatctgctctctaaaaacctc
gaacaggaaagacgtgcagctcagaaggaggaagcctcgaatgttgtatcaatggaggcc
tttaaagagttagagcagcagaaggaggagatggagaagagacttctggaaaaaaatagg
caacttgagaatgagcttcatgagaagaagctttctgaaagtgaggaagggatgccgctg
catgctgaggaccgtgcaggtgctgcagcacctctgtctctagactcagccttacaggag
cgcctgcagcaggagagggcatccctgcagtcccagattgagctgttggagaagcaaaaa
aaggaagagattcagaacctgaaaacatcactaatcgcagagcagcagacaaacttcaac
accgttctaacaagagaaaagttgaagaaggagcagatcatcaacgacctcacagagaag
ttacgaaaagttacccagcagcaagaaaaggacaaagctctgatagagacgctgtctgag
gaccgagcaagtatgatgcaggagaaaaaacaactggaggaagagctcaaccgcctgcgc
aactctgcactggtctcttcagccttcttcccgtccaactctgcccaagacctctcagag
gctggagcagcaggaagagctctgcctattgcaggggcctgttcaccagagacgcctgca
gaaatggaccgactagcccctgtagcaacattcagagatgatgaacatgtcgattcagca
gtagaagcaagcttggtcgctgctgatgacaccatgatgtctgaagagaagcagcggata
atgttgcttgagaggactttgcacatgaaggaagaagaaaataagcgcctcagccaacga
ctgatgtctcaaagcatgtcctctatgtcgtctcgccattcagacaaaatcgccatcaga
gatttccaggtcggcgatttggttctaatcatccttgatgaaaggcatgacaactacgtg
ctcttcactgttggtcccaccctctactttctgcactcagaatctctcactgcgctggac
cttaaaccggcatcagggacctcaagacggccgtgggtacttggaaaggtgatggaaaag
gaatattgccaggcaaaaaaggcccaaaacaggttcaaggttcctttaggtaccaagttc
tacagagtgaaagccgttccatggaacagaaaagtctaa
DBGET
integrated database retrieval system
