Cyprinodon variegatus (sheepshead minnow): 107102088
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Entry
107102088 CDS
T06110
Symbol
col9a1
Name
(RefSeq) collagen alpha-1(IX) chain
KO
K08131
collagen type IX alpha
Organism
cvg
Cyprinodon variegatus (sheepshead minnow)
Pathway
cvg04510
Focal adhesion
cvg04512
ECM-receptor interaction
cvg04518
Integrin signaling
cvg04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
cvg00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
107102088 (col9a1)
04518 Integrin signaling
107102088 (col9a1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
107102088 (col9a1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
107102088 (col9a1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
cvg00535
]
107102088 (col9a1)
Proteoglycans [BR:
cvg00535
]
Extracellular matrix (ECM) proteoglycans
Others
107102088 (col9a1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
107102088
NCBI-ProteinID:
XP_015256740
Ensembl:
ENSCVAG00000003352
LinkDB
All DBs
Position
Unknown
AA seq
678 aa
AA seq
DB search
MAGTPGIRGPILVVILQLVLLCSSQINRGPPGPPGPPGVPGIDGIAGERGVDGEDGFPGP
DGDAGKPGSLGLPGIPGKAGLTGPVGDPGPDGPLGQKGEPGNPGPRGATGVGPDGPPGPP
GPGGLLGELGKVGPPGAMGVRGPQGPRGPQGPRGATGMLGSSDLCPNSCPPGTPGHPGPP
GMKGHKGVKGESGEPGKQGHKGEEGDQGGPGDVGSQGPTGPQGVRGAMGMMGPKGEMGSR
GPDGEPGPQGVAGGAGDRGQRGVMGEPGTKGEIGGQGPRGITGLPGPKGEAGLPGVDGRE
GIPGLPGAKGNIGKPGVPGEVGLQGLPGLPGTPGPKGLSGPKGDAGKPGFPGTLGSAGKQ
GERGEQGEVGPVGPIGEPGDAGEPGPVGPAGKPGKRGPKGDPGLPGLPGPPGLPGVKGER
GERGEQGPKGEQGAQGDEGDPGERGEVGDAGEPGPKGEAGISGEPGNRGPEGPRGQPGID
GPPGSPGPRGMQGNRGPRGVRGSQGPAGKEPTDQHIRQVCMRVMQEQLAQLAASLRRPES
GAAGLPGKPGPPGPPGPPGNSGFPGQAGARGLPGLKGPLGPMGNKGPKGDMGDRGSRGPT
VRGAKGQPGPPGLPGEPGKPGYGQDGQDGQRGPPGVPGQPGVPGPPGPAGQNGYCDPSAC
NLQAGLQQSLDVKGPAGN
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
atggctggaaccccaggcattagagggcctattcttgtggtgatcctgcaacttgtgctc
ctttgttcctcccaaataaatcgaggaccccctggcccacctggacccccaggagtccca
ggaatagatggcattgctggggaacgtggcgtagatggcgaggacggctttcctggccct
gatggggatgctggtaaacccggttctttaggattacctggaattcctggaaaagctggt
ttgactggccctgttggggatcctgggcctgatggtcccctaggacagaaaggtgaacct
gggaatcctggacctcgtggagctactggtgtggggcctgatggaccccctggaccacca
gggcctggtgggcttctgggtgaattgggaaaagtaggacctcctggtgcaatgggtgtg
agagggccacaggggccccgtggaccacaagggcccagaggtgcaactggaatgcttggc
tcctctgacctgtgtccaaactcgtgtccacctggtactcctgggcatcctggcccacct
ggtatgaagggtcacaaaggtgtgaaaggggagtcaggggagcctggaaaacagggacac
aagggggaggaaggagaccagggaggaccaggagatgttgggtcccagggtccgacagga
ccccagggagtacgtggagccatgggaatgatgggccccaagggagagatgggatctcga
ggtccagatggagagccaggtccacagggagtagcagggggagcaggggacagaggtcag
agaggagtaatgggtgagcctgggacaaaaggtgaaatagggggtcaaggaccacgaggg
ataacaggactcccaggtcccaaaggagaagctggattacctggtgttgacggacgtgag
ggtattcctgggttgccgggtgcaaagggaaacattggcaagccaggcgttcctggagag
gttggacttcaggggcttcctggtttacctggaacaccgggaccaaaaggcttgagtggc
cccaagggtgatgccgggaaacctggttttcctgggaccttgggatcggctggaaaacaa
ggtgaaaggggagaacaaggagaggtgggacctgtgggacccatcggtgagcctggagat
gctggagagcccggtcctgtaggcccagctggtaaaccaggcaaaagaggacccaaaggg
gatcctggtctccctggtctcccagggcctcccggccttccaggagttaagggagaaagg
ggtgaacgtggagaacaaggacccaaaggagaacaaggagctcaaggggatgagggagat
cctggagagagaggagaagttggtgatgctggagaacctggaccaaaaggagaggctggt
atttcaggtgaacctggcaataggggtcctgagggaccccgaggccagccgggtattgac
ggtccccctggctcaccgggaccacgaggaatgcagggaaacaggggtccacgtggggtc
agaggatctcagggacctgcgggtaaagagccaactgatcagcacatcaggcaagtctgc
atgcgagttatgcaagagcagctggctcagttagctgccagtttacggaggccggagtct
ggcgctgcaggtttgccaggaaaaccgggtcctccagggcctcctgggcccccaggaaac
agcggctttccaggacaagctggagcaagagggcttccaggactgaaagggccactgggg
ccaatgggaaataaaggtcctaaaggtgatatgggagacagagggtcaagaggacccact
gtacgaggagctaaaggccaaccaggacctcctgggcttccaggagagccaggaaaacct
ggctatggtcaggatggtcaggacgggcagaggggacctcctggcgttccaggacagcct
ggtgtgcctggtcctcctggtccagctggccagaatggctattgcgacccgtcagcctgc
aatctccaggcaggactccagcagtctctggatgtgaagggacctgcagggaactaa
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