Cyprinodon variegatus (sheepshead minnow): 107102511
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Entry
107102511 CDS
T06110
Symbol
lamb1
Name
(RefSeq) laminin subunit beta-1
KO
K05636
laminin, beta 1
Organism
cvg
Cyprinodon variegatus (sheepshead minnow)
Pathway
cvg04510
Focal adhesion
cvg04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
cvg00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
107102511 (lamb1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
107102511 (lamb1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
EGF_laminin
LAMININ_IV_B
Laminin_N
EGF_LMN_ATRN
LAMB1
F5_F8_type_C
EGF_Teneurin
Motif
Other DBs
NCBI-GeneID:
107102511
NCBI-ProteinID:
XP_015257330
Ensembl:
ENSCVAG00000009648
UniProt:
A0A3Q2DZ61
LinkDB
All DBs
Position
Unknown
AA seq
1800 aa
AA seq
DB search
MLQLQLSVLLALQVITCAQDGGESLVGSPVDVSLPELSDMCTEGSCYPATGDLLIGRAHQ
LSSTSTCGLKRPEPFCIVSHLQEEKKCFVCDSAAPYDDELANHNNSHRIENVVTTFGPNR
LKTWWQSENGLENVTIQLNLEAEFHFTHLIMTFRTFRPAAMVIERSADFGITWQVYRYFA
YDCETSFPSVSQGPMQKVDDVICDSRYSDIEPSTEGEVIYRVLDPAFRIEDPYSPRIQNL
LKITNLRVKFTKLHTLGDNLLDSRMEIKEKYYYAIYDMVVRGNCFCYGHASECAPVEGTG
QAIEGMVHGHCMCNHNTKGLNCEQCEDFYHDLPWRPAEGRNTNACKKCNCNQHSDLCHFD
MALFLASGNISGGVCDNCQHNTTGNNCEQCKPFYFQHPEKDLRDPNICQPCNCDPVGSLY
GGICDRMTDIQAGLIAGQCRCKINVEGERCERCKPAHYGLSNEPEGCKACTCSSLGTAPG
GNPCDSETGICFCKRLVTGRDCDQCVDEHWGLSNDRDGCRPCDCDLGGAVHNRCDQVSGQ
CVCRDHMFGRRCDQVESGFYFVALDHYIYEAEDAKFGPEVTVVPRPHPHDRSPTWTGVGL
VNVPEGAFLEFTVDNIPHSMEYDILIRYEPQLPDQWEEVLMAVIRPGPIRADSRCINTVP
DDDNQMISLHPSSRYVVLPRPVCFETGLTYTIRLSLPLYSAVSDVHSPYTLIDSIVLMPH
CKNLDIFTSSEGGDSSAWETFQKYRCLENSQSVVKTPMTDICRNFIFSISALLHQGAKEC
QCDPQGSLSTVCDPIGGQCQCRPNVVGRSCDRCAPATFQFGPNGCKDCACDPQGSQSPIC
DQLSGQCVCVIGAYGRQCDRCLPGHWGFPSCRPCSCNGHTETCDADTGRCTACRDHTTGH
SCDRCLDGYYGDPVLGSGDHCRPCLCPDGPNSLRQFAGSCYRSDTSEQVVCVCNPGYKGA
RCDQCSPGYYGNPDETGGQCLPCQCNNNIDMLDPESCDARTGECLRCLYHSEGPACQNCK
LGYYGNALVQDCRKCVCNTLGTNQSSCPSSSDCHCDRSSGQCNCLPNVIGQHCDRCAADT
WNMASGAGCQSCDCDPKHSLGTSCNEISGQCSCHPGFGGRTCNECRELFWGDPELQCRAC
DCDPRGILEPQCNKVSGHCVCLEGVAGPRCDVCARGFHGTFPDCQRCHQCFSEWDDIIGQ
LTNQTHRMVNKVNAIKASGISGPYRKSIESMERSAADVRAILDQNPASQPLTEVQTLLEQ
ASDLMSALSQAMNDTEETLGLVGEQESGMKTKLDSVMSDAQKLEQTVQELLGQVEFIKNS
DIRGATDTVTKYFLQSQEAEARANASTIEAGSPIETSAALRQLTEDKLNQSREEFLERHS
EHARKLDNLAGEMETLDLSVISYKTCGSPSSGQESCWSSSCGGLGCVDPDGQARCGGEGC
DGAVTAANSILLKTQETEKEIISAMAEVEKLSKMVSEVKMQADGAKLSAQNVLMKTNRTK
HKVDQSNEELRSLIRQIKDFLTQDAADLESIELVASEVLAMQMPTTPAQLQNLTDEIRHR
VGELGNVEAILQQSTDDIQRAETLLDQARQASKQATDVKDSAERVKQALEEAQRAHTAAS
SAIQQAASDIQTTTKLLSSVETETADAESKLYNATQRLQRLEQDVRLLTDKSANVTQKAK
LTDQEAAEIGRIAKDVKKELESEVKQKYSTVEQLIGQKAGGVADAKKRAESLQNEAKQLL
LQASDKLQLLKDLEKSYEDNQRTLETKAEQLVELEAAVKELLQEISQKATVYSTCVFLLF
NT seq
5403 nt
NT seq
+upstream
nt +downstream
nt
atgttgcagctgcagctatcggtgctgctcgccctgcaggtgatcacctgcgctcaggac
gggggagagtcgctggttgggtcgccggttgacgtcagccttccggagcttagcgacatg
tgcactgaaggaagctgttacccagcaactggggatcttcttattggccgagctcaccag
ctgtcgtccacctctacctgtggtctgaagcgtccagaaccgttctgcattgtcagccac
ttgcaggaggagaagaagtgctttgtgtgtgattctgcagcaccatatgatgatgagctg
gccaaccacaacaacagccaccgcattgaaaacgttgtcaccacatttggtcccaacagg
ctgaagacctggtggcagtctgagaacggtctggagaatgtcaccatccagctgaatctt
gaagcagagtttcacttcactcatctcattatgaccttcaggacatttcgaccggctgcc
atggtcatcgaacgatcagcggactttgggataacctggcaggtttaccgttactttgcc
tatgactgcgagacgtcctttccgtctgtttcccagggtccaatgcagaaggttgatgat
gtcatctgtgactctcggtactcggatattgagccatccactgagggcgaggtgatttac
cgagtcctggatccagcatttcggattgaagacccatacagtccacgaatccagaactta
ttgaagatcaccaacttacgggtgaagtttaccaaactgcacaccctcggagacaacctg
ctggactccagaatggagatcaaagaaaagtattactatgccatctatgacatggtggtg
agaggaaactgtttctgttatggacatgcctctgaatgcgcccctgtggagggaacaggc
caagcgattgaaggcatggttcatggtcactgcatgtgtaaccacaacactaaaggactg
aactgtgaacagtgcgaggacttctaccatgaccttccctggagaccagcagagggacgc
aacacaaacgcctgcaagaagtgtaactgcaaccagcattcggacttgtgtcacttcgac
atggccttgttcttggcctctgggaacatcagcggaggagtttgtgacaactgtcagcac
aacacgaccggaaacaactgcgagcagtgcaaaccgttttatttccaacacccagagaag
gatctcagagaccccaacatctgccagccatgtaactgtgacccggtgggttccctttac
ggaggaatatgcgacaggatgacggatatacaggccggtctgatcgctggtcagtgccgc
tgtaaaatcaacgtggagggagaacgctgcgagcgctgcaaaccggcacattacgggctc
agcaacgaacctgaaggctgcaaagcctgtacctgcagctccctgggaaccgctcctgga
ggaaacccctgcgacagtgaaacaggaatctgtttctgtaagcgtctggtgacgggacga
gactgcgaccagtgtgtggatgaacactggggcctcagtaacgacagggacggctgcagg
ccgtgtgactgtgatctgggaggagccgtccacaaccggtgtgatcaggtgagcggccag
tgtgtctgcagagatcacatgtttggtcgccgctgcgatcaggtggagtctggattctac
ttcgttgctctggatcactacatctacgaagctgaagatgccaagtttggaccggaagtg
accgttgtacccagaccccaccctcatgaccgcagtcctacctggacaggtgttggccta
gtcaatgttcctgaaggggccttcctggagttcactgtagacaacatccctcattccatg
gagtatgacattctcatccgctatgagcctcagctgcctgatcaatgggaggaggttctg
atggcggtgataaggcctggaccaatcagagctgacagccgctgtatcaacacggtgcca
gacgatgacaaccaaatgatctcccttcaccccagctcacggtacgtggttctgccaagg
ccggtttgttttgaaactggactgacctacacgatccgactcagtctgccgctctactcg
gctgtcagtgacgtgcattctccgtacacgcttatcgactcgatcgtgctgatgcctcac
tgtaagaacctggacatattcacctcctctgagggaggggattctagcgcttgggaaaca
tttcagaagtatcggtgtctggaaaacagccagagtgtcgttaagaccccaatgaccgac
atctgtaggaacttcatcttcagcatctctgctctgttgcaccagggagctaaagaatgc
cagtgtgacccccagggctccctcagcacagtgtgtgatcccatcgggggccagtgtcag
tgccgacccaatgtggtgggcaggagctgtgacagatgtgctccggctactttccagttt
ggaccaaacggctgcaaagattgtgcgtgtgaccctcagggttcccagagtccaatctgc
gatcagctgagcggtcagtgtgtctgcgtcatcggggcatacggtcggcaatgcgatcgc
tgcctcccgggtcactggggcttcccgtcctgccgtccctgttcctgtaacggacacaca
gaaacctgtgatgccgacaccggccgctgcactgcctgcagggaccataccaccggacac
agctgcgacaggtgtctggatggttactatggtgatccagtgctgggatcaggtgaccac
tgtcgtccatgtttgtgtcccgatggccccaacagtttgcgtcagtttgccggaagttgt
taccgtagcgacacttcggagcaggtcgtgtgcgtctgcaacccaggatacaaaggtgct
cgctgtgatcagtgttcacctggttactatggaaaccccgacgagacagggggccaatgt
ctcccatgccagtgcaacaacaacatcgacatgctggacccggagtcctgtgacgccaga
accggagagtgcctgagatgtctgtaccacagtgaaggccccgcctgccagaactgcaag
ctgggttactacggcaacgccttggtccaggattgccgaaagtgtgtttgtaacacactg
ggaaccaaccagtccagctgtccgtcctccagcgactgccactgcgatcgcagcagcggt
cagtgtaactgcttgcccaacgttatcggtcaacactgcgaccgctgcgccgcagatacc
tggaacatggccagcggcgccggctgtcagagctgcgactgcgaccccaaacactcatta
gggacatcctgtaacgagatcagcggtcagtgttcctgccatcctggttttggaggaagg
acgtgtaatgagtgcagagaactgttctggggggaccctgaacttcagtgtcgagcttgt
gactgcgaccctcgtgggatcctggagccacagtgtaacaaagtcagcggtcactgcgtc
tgcctggagggtgtggctggacctcgctgtgatgtctgcgcccgcggcttccatggaacc
ttccctgactgtcagcggtgtcaccagtgtttctcagagtgggacgacatcatcggccag
ctgaccaaccagacacaccgaatggtcaacaaggtcaacgccattaaagctagtggaatc
agcgggccgtacaggaagtctatagagagtatggagagaagcgctgctgatgtccgggcc
atcttggaccaaaacccggcttcccaacctctgactgaagtccagactctgctggagcag
gccagcgacctgatgtcagccttgagtcaggctatgaacgacacagaggagactctgggt
ctggttggggagcaggagtccggcatgaaaactaaactggactctgtgatgtcagacgct
cagaaactggaacaaacagtccaggagttactgggccaagtggagttcatcaagaactct
gatatcagaggagcaacagacaccgtcaccaagtacttcctgcagtctcaggaagccgag
gctcgagcaaatgcctcaaccatcgaagctggaagtccaattgaaacttctgctgctcta
cggcaactcacggaggacaagctgaaccagagcagggaggagtttctggaaaggcactct
gaacatgctcggaagctggacaacctagcaggagagatggagacattggacctttcagtg
atcagctacaagacctgtggcagcccatcctctggccaagagtcctgttggtcttcttcc
tgcggaggtctgggctgtgtagaccctgacggtcaggccaggtgtggaggagagggatgt
gatggtgcagtgacagcagccaacagcatcctattaaagacccaggagactgagaaggaa
atcatcagcgccatggcagaggtggagaagctttcaaagatggtgtccgaggtgaagatg
caggctgatggggcaaagctgagtgctcagaatgtcctgatgaagaccaacagaaccaaa
cacaaagttgaccagagcaacgaggagctgaggagcttaattagacaaatcaaagatttc
ctcacacaggatgctgctgacctggagagcattgaacttgtggcaagtgaagttctggcc
atgcagatgccgaccacaccagctcagctacagaaccttacggatgagatccggcacagg
gtgggggagctgggaaacgtagaggcaatcttacagcagagcactgacgacatccagaga
gcagagactctgctggaccaggctcgccaagcaagtaagcaggcgacagatgtgaaggac
tctgcagagagagtgaaacaagctctggaagaagcccagagagctcacaccgctgccagc
agcgccatccagcaggccgcctccgacattcagactacaaccaagcttctctcctctgta
gagacggagacagcggacgctgagtccaagctgtacaacgccacccagagactgcagagg
ctggagcaagatgtgaggctgctcactgataaatcagcaaatgtcactcagaaagccaaa
ctgaccgatcaagaagctgcagagatcggaaggattgcaaaggatgtcaaaaaggagctg
gagtcggaagtgaagcaaaagtacagcacagtggagcagctgataggccagaaagcaggg
ggtgtggctgatgctaagaagagggcagagtcactacagaatgaagccaaacagttgctg
ctacaggccagtgacaagctgcagctgctgaaagatttggaaaagtcatatgaagacaat
cagcgaactcttgagacgaaagctgaacagttggttgagctggaagcagccgtaaaggaa
ctgctgcaggaaatcagccaaaaagccaccgtctacagcacctgtgtgtttttattattc
tga
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