Cyprinodon variegatus (sheepshead minnow): 107102679
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Entry
107102679 CDS
T06110
Symbol
smg5
Name
(RefSeq) protein SMG5
KO
K11125
protein SMG5
Organism
cvg
Cyprinodon variegatus (sheepshead minnow)
Pathway
cvg03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cvg00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
107102679 (smg5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cvg03019
]
107102679 (smg5)
03032 DNA replication proteins [BR:
cvg03032
]
107102679 (smg5)
Messenger RNA biogenesis [BR:
cvg03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
107102679 (smg5)
mRNA cycle factors
Common to processing body (P body) and stress granule
107102679 (smg5)
DNA replication proteins [BR:
cvg03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (animals)
107102679 (smg5)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
PIN_4
Motif
Other DBs
NCBI-GeneID:
107102679
NCBI-ProteinID:
XP_015257937
LinkDB
All DBs
Position
Unknown
AA seq
1067 aa
AA seq
DB search
MSGPGQDSEPEAKVLLIKRLYRAVVESVHKLDVIIGSKSSYREVFKPENISLRNKLRELC
VKLMFLHPVDYGRKAEELLWRKVYYEVIQVIKTNKKHIHSRSALECAYRTHLIAGVGFYQ
HLLLYIQSHYQLELQDCIDWTHVTDPLIVFTGMPFNQLGTLAGSKFYNVEATYYYLRCIQ
SDTPFEGAYGNLKRLFDKAAKMYHQVKKQEMKKLSPSRQRSKEASLRLTQRDGVGSDGLS
SLSGLPRRSGLMETELTSLCQSVLEDFNLVLFYLPAPTHGGAPPCPSEEEEEQPQHSDSS
YPVLPDNLIFKMVVTCLMVVHSLKRGGSKQYSASIAFTLALFSHLVNHVNIRLQAELEDG
ESQVPPLHTDAADDLEMRDLSIAEVDPSRERPLQNGSLEQEDEEDKDEDGGERAKVKKLS
SEEEDQRKTEEEKQRQKKKYTRLSRLRRRRCAHKGGPGEDESDLSEGFESEEDEEDDEGG
RVRADSMGGTAADEPLNPGSGTKEMRRDALGEEGGWESGSEEEEGGTAFDVETDSDMNSQ
ESRSDLEDIEESENAEGQAQQHEEEEEDQPKAKGEERDGETPPSSNGPLVQSDSSISSNL
QAMSSQLFQSKRCFRLAPTFSNKLLRPAPASSLGIPAPTETSAPPSQETPPPPGDLHCDL
NPGTANGTNDNDLGSDSEESQHSTQSAHSEKTLLEKLEILTNQGLMQIVKVFIDWLRTNT
DIILMCAQSSQSLWNRLSVLLNLLPDGSKMLEADLGLNAEVTEMLKECEQPGLVQALLLP
EDVALQHLPALGVAHRRLDFTRRNTSLTPLQECVVRVCCIRSFGHFLTNLQGNVLHFNPE
AGIFTSISQSEQDNLVQQAKAQFRMAEEEARRNRLMRDMAQLRLQLEVSQLEGSLQQPKA
QSSMSPYLVPDAAALCQHLNLIRQLAGSGCFIIIIPRTVIDGLDRLKKENPGARDGIRFL
ESEFRKGNRYIRCQKESGRTFERDKLKRQDMEAWHLYKMVDSCRQLTVSQSNGDEDTAGM
VTILTGHDVDELCSRSAAMKSATQAASSAGMELKNIAEFYRQWKEIG
NT seq
3204 nt
NT seq
+upstream
nt +downstream
nt
atgagcggaccgggtcaggacagcgagcctgaggcgaaagtcctgcttataaagcggctt
tacagggctgtggtggaatctgtgcacaagctggatgtcatcatcggcagcaagtcgtcg
tacagagaagtcttcaagccggagaacatcagcctccggaacaagctgagagagctgtgt
gtgaaattgatgttccttcatcccgtcgactacggccgcaaggctgaggagctgctctgg
aggaaggtttactatgaggtcatccaggttatcaagacaaacaagaagcacatccacagt
cggagcgccctagagtgtgcttacagaactcacctcatcgccggcgtgggtttctaccaa
catctgctgctctacatccaatcacattaccagctggagctgcaggactgcatcgattgg
acgcacgtcaccgatcctctcattgttttcacaggaatgccttttaaccaactgggaaca
ctggctgggagcaagttctacaatgttgaagcaacctactactacttacgatgcatccaa
tcagatactccgtttgagggcgcctatggcaacctgaagcgcctgttcgacaaggcagcc
aagatgtaccaccaggtgaagaagcaggagatgaagaagctgtccccgtcccgccaaagg
tcgaaagaagccagtctccgcctcacccagagagatggagtgggctcagatggcctgtca
tcgctgtctggtctacctcggagatctggtttgatggagacggagctgacttctctctgc
cagtcggtgctggaggacttcaacctggtcctcttttatcttccggctccaacacacggg
ggcgccccgccctgtccaagcgaggaagaggaggagcagccgcagcacagcgacagctcc
tatcccgttctgcctgacaacctcatcttcaagatggtggttacatgcctgatggtggtt
cacagccttaagagaggaggatcaaagcagtacagcgcctcaatagctttcactctggcc
ctgttttcacacctcgtgaaccacgtgaacatccggctgcaggccgagctggaggacggg
gagagccaggtgcctccgcttcacaccgacgctgcagatgaccttgagatgagagatttg
tcaattgcagaggtggatccttccagggagaggcctctgcagaatggctctctagagcag
gaggatgaggaggacaaggatgaagacggcggtgagcgagccaaagttaaaaagctcagc
agtgaagaagaagaccagcggaagactgaggaggagaaacagaggcagaagaagaagtac
acccgcctgtctcggctgcgccgccgtcgctgcgcacacaaaggcggtccaggagaggac
gaaagcgatctgagcgaaggattcgagagcgaagaggacgaggaagatgatgaaggagga
agggtccgcgctgattcgatgggcggaacggcagcggacgagccgcttaaccccggatct
gggacgaaggagatgaggagggatgccctgggtgaggaaggcggctgggaaagcggctct
gaggaagaggaaggaggaacagcttttgatgtggagaccgactctgacatgaacagccaa
gagtcccgctcagacctggaagacatcgaggaaagcgaaaacgcagaaggtcaggcccag
cagcacgaggaggaagaggaagaccaacccaaggcaaagggagaagagagggatggggag
actcctcccagctccaacgggcccctggtgcaaagcgactccagcatcagcagcaacctg
caggccatgtcctcccaactcttccagtccaaacgctgcttccgcctggctccaacgttc
agcaacaagctcctgaggcctgctcccgcttcgtctttgggaattcctgcccccacggaa
acctctgctcctccctcccaggagacgccccctcctcctggagatttacactgcgacctg
aaccctggtactgccaacggaacaaacgacaatgacctcggctctgactcagaggaaagt
cagcacagcacccagtctgcacacagtgaaaaaaccctgttggagaagctggagattttg
accaatcagggcttaatgcagatcgtgaaggtcttcatcgattggctcaggacaaacaca
gatattatcctcatgtgtgcacagagttcccagagcttgtggaaccgtctgtctgttttg
ttaaacctccttccagatggcagcaagatgctcgaggctgatctggggttgaacgcagag
gtgacagaaatgttaaaggagtgcgaacagccgggattggtccaggctctgctgctgccg
gaagacgtggctctgcaacacctccccgctctcggtgtagctcaccgccgcctggacttt
actcgacgcaacacctccctcactcccctgcaggagtgtgtggtgcgagtctgttgcatc
cgcagttttggccacttcctgacaaatctccaaggcaacgtcctgcacttcaacccagag
gcgggcatcttcaccagcatcagccagtcggagcaggataatctggtgcagcaggccaag
gcccagttcaggatggctgaagaggaagctcgtaggaatcgtttaatgagagacatggcc
cagcttcgactccagttagaggtttcacagctagagggcagccttcagcagcctaaagct
cagtcctccatgtctccttatcttgttcctgatgccgccgccctctgccagcatctaaac
ctcatcagacagctggctggcagcggctgcttcatcatcatcatcccaagaacagtgatt
gacggattggaccggttaaaaaaggaaaatccgggtgcgagagacggcattcgctttctg
gagtcggagttccgcaaaggcaacaggtacatacgctgtcagaaggagtctggtcgcact
tttgaaagagacaaactcaaacggcaggacatggaagcttggcatctgtacaagatggtg
gacagctgccgccagctgacggtgtcccagagcaacggagacgaagacacggccggcatg
gtgaccatcctgacaggccatgatgtagacgagctctgctctcggtctgcagccatgaag
tcagcgactcaggccgcttcctccgcaggcatggagctgaagaacatcgcagagttttac
cgtcagtggaaggagatcggctga
DBGET
integrated database retrieval system
