Cyprinodon variegatus (sheepshead minnow): 107102739
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Entry
107102739 CDS
T06110
Symbol
col28a1
Name
(RefSeq) collagen alpha-1(XXVIII) chain
KO
K23619
collagen type XXVIII alpha
Organism
cvg
Cyprinodon variegatus (sheepshead minnow)
Brite
KEGG Orthology (KO) [BR:
cvg00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
cvg01002
]
107102739 (col28a1)
Peptidases and inhibitors [BR:
cvg01002
]
Peptidase inhibitors
Family I2: Kunitz - BPTI family
107102739 (col28a1)
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
VWA
Kunitz_BPTI
VWA_2
VWA_3
PqqF-like_C_4
Motif
Other DBs
NCBI-GeneID:
107102739
NCBI-ProteinID:
XP_015257641
LinkDB
All DBs
Position
Unknown
AA seq
1102 aa
AA seq
DB search
MNVPELVKIFALSLVLSCPIRCQHRKRKSQRDDNQVIPYKPKGLICPVEIMFLVDSTENT
KSVLFEQQKEFIRSFSTKLVQLHAAGWRIRLRLAALQYSSNVSVEHNFRDWQDLDVFQSR
VGLMSYIGHGSYSAYAITNATNVFKQETSSNSLRVALLMTDGSDHPRSPSAVAAAAEAKQ
HNIRVFTILLSGPPKPSAMGTRLRSIASAPPQQHMFSLSDSQLHQKLLGEINTIVTSGCP
QPKDCMCEKGEKGRPGSPGKPGKPGTDGAPGPKGSQGEPGTNGRPGIEGLQGARGAPGDP
GPEGPAGPKGDGGLGGVPGPPGEPGSGFPGPKGDKGNQGRPGPAGPMGSGETGAQGPPGP
PGLQGPPGFPGEGLIGPQGERGYEGPKGSRGPPGLGRKGDKGSTGEPGLPGLAGAPGEGL
QGEKGDPGPIGPTGPRGPPGLLIVGPKGDQGFPGEPGLQGERGSGEAGPKGENGPDGAPG
IPGIPGEDGAVGPKGERGLPGPRGPDGDPGRGTPGEKGDRGERGSRGLSGPPGPVGPPGA
KGEPGSPGSTGQPGPPGQSSAGTKGDPGPVGPSGPVGEPGQGITGPKGSKGSIGAVGPQG
PKGDSLIGPQGLPGLPGLQGETGPEGKGQPGAKGERGLPGVPGPSGPSGTGLPGPKGSTG
KPGPPGMPGPPGEGQPGPKGEPGFQGPVGLRGFPGQSLLGEKGSQGSPGHKGRKGETGDF
GPPGSPGPMGRPGEKGEPGLTKDEVIQIIKEILGCGVMCRGSPLELVFVIESSWSVGPEH
FELVKDFVIAIIDQLPVSQGASRVGVVLYSRLNKVVVSLQQQPSKDEIKEAVRTMPYLGE
GTFTGSAVHRAKQLFQASRPHVGKVAVVLMAAQSDRRDFMEFKEAVSDSHEEGIELFVIA
VGNKTDLYGEFLTQIRTFASDPDEDHVYLLDDFQMLSGLENNLLKQICDQDASTAFLPKW
FFSSVETHLDYPEDRDSTFIPKDENIKLWLPDGTESPQAPQPTEVQRPLEKIDSELMLEP
SIRQTGEQGKQTPFSSPPPTLTPVSGQGCSQPLEPGPCRQYTVRWYYDPEANACAQFWFG
GCHGNANNFESEVNCRNACIYT
NT seq
3309 nt
NT seq
+upstream
nt +downstream
nt
atgaatgtgccggagcttgtaaagatattcgctctcagtcttgtgctgtcatgcccaatc
agatgccaacacagaaagaggaaaagccagagagatgacaaccaggtcatcccatataaa
cccaaaggcctgatctgcccggtggaaatcatgttcctggtggacagtacagagaacaca
aaatctgtgctgtttgagcaacagaaggagttcatccggagcttcagcaccaagctagtg
cagcttcacgcagcaggctggcgtattcgcctgcgcctggctgctttgcagtatagcagc
aacgtctccgtagagcacaacttcagagactggcaggacctggatgtcttccagagtagg
gttggcttgatgagttatattggccatggctcctactccgcctatgccatcaccaatgcc
accaatgtgtttaagcaagagacatcctccaacagcctccgggtggcgctgctgatgacg
gatggaagcgaccacccacgcagccccagcgccgtggcggcggctgcagaggccaaacag
cacaacatcagagtgttcaccatcctgctgtctggaccgcccaaaccaagcgccatggga
acaaggctgcgatccatcgccagcgcccccccacagcagcatatgttcagcctcagtgac
agccagctccaccaaaagctcctgggagaaataaatacgattgtgacctctgggtgcccg
cagccaaaggattgcatgtgtgagaaaggagagaagggtcgccctggtagtccaggtaaa
ccagggaagcctgggacagacggcgctccaggaccaaaaggatctcagggagaacctgga
accaacggacgtccaggaatagaaggccttcagggagccagaggagcaccaggagacccg
ggtccagaaggaccagctgggcccaaaggtgatgggggactaggaggtgtacctggacct
ccaggagaaccaggttctggcttccctggtccaaagggtgacaaggggaaccaggggaga
ccaggtccagctggaccgatgggttctggtgagaccggagctcagggtccaccagggcct
ccaggattacaaggtcctcctgggtttccaggcgagggtctaattggaccccagggtgag
agggggtacgaggggcccaaaggcagccgtggacctcctggactcggacggaaaggcgat
aagggaagcacaggtgaacctgggctcccaggtttggccggggctccaggtgaagggctc
caaggagaaaagggggatcctggacccatcggccccacaggtcccagagggcctccagga
ctgctaatagttggaccaaagggtgatcaaggctttcctggagagccaggtcttcaagga
gaaaggggctcaggtgaagcaggtccaaagggtgagaacggacctgatggggctcctgga
atacctggaattcctggagaagatggagcagttggacccaagggggagaggggtttaccg
ggaccacgagggccagatggagatccgggcagaggcacacctggagaaaagggagatcgg
ggtgaacgaggctccaggggactctcaggccctccgggaccagtgggacctccaggagca
aagggtgaaccaggaagcccaggaagtaccggccaaccgggacctcctggacaaagctct
gctggaacaaagggagatcctggccctgtcggaccatccggaccagttggagaacctgga
cagggaataactggacctaaaggaagcaaaggaagcattggagctgttgggccacaggga
ccaaagggagactccttgattgggccacagggtctgccaggtttgccaggactgcaggga
gaaacgggacctgaaggaaaaggacaaccaggagcaaagggtgagagaggcttgccgggt
gtaccaggaccatcaggtccttctgggactggacttcctggaccaaagggctccacagga
aaacctggcccacctggcatgcctgggcctccaggagaaggacaaccaggaccaaaggga
gagcctggatttcaagggccagtggggttaagggggtttccagggcagagtctcctagga
gagaagggcagtcaaggatctcctgggcacaagggaagaaagggagaaacaggagacttt
ggaccacctggttcccctggacccatggggagacccggagaaaaaggagagccaggactt
acgaaagacgaggtcatccagatcataaaggaaatactgggatgtggagtcatgtgcaga
gggagtccactagaacttgtatttgtcattgaaagctcgtggagtgttggaccagaacat
tttgaactggttaaggactttgttattgccattattgaccagctaccagtcagccaggga
gctagccgtgttggggtcgtgctctacagccgtttgaacaaagtggttgttagtctgcag
cagcagcccagcaaagatgagattaaggaagctgtcagaaccatgccctacctgggtgag
ggcaccttcaccggtagcgctgtccatcgagccaagcagctgttccaagcctctcggcct
catgtggggaaggtggccgtggttttaatggctgctcagtcagatcgacgggatttcatg
gagtttaaagaagccgtctctgattcccatgaagaaggcattgagctgtttgttatagcc
gtgggaaacaagactgatctttatggagaattcctgactcagataagaacgtttgcctca
gaccctgatgaagaccatgtctacctcctggatgactttcagatgttatctggtctagag
aataatttactgaagcagatttgtgatcaagatgcatcaacagcgtttctaccaaaatgg
tttttctcctctgtggaaacccatctggattatccggaagacagggactcaacattcatc
ccaaaagatgaaaacataaagctttggcttccagatggaacagaatcccctcaagctcca
cagccaactgaggtacagaggcctctggagaagatcgattctgagctgatgctggagccc
tcaatcaggcagacaggcgaacaggggaagcaaacacctttcagttctcctccgcctaca
ctgacacctgtatcaggtcagggctgcagccagcctcttgaacccggtccatgtcgacag
tacacagtcaggtggtactacgacccagaggccaacgcctgcgcccagttttggtttgga
ggttgccacggcaatgcaaacaactttgagagtgaagtgaactgtaggaatgcctgcatc
tacacgtag
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