Cyprinodon variegatus (sheepshead minnow): 107102748
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Entry
107102748 CDS
T06110
Symbol
ythdc2
Name
(RefSeq) probable ATP-dependent RNA helicase YTHDC2 isoform X1
KO
K20099
ATP-dependent RNA helicase YTHDC2 [EC:
5.6.2.6
]
Organism
cvg
Cyprinodon variegatus (sheepshead minnow)
Brite
KEGG Orthology (KO) [BR:
cvg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cvg03041
]
107102748 (ythdc2)
Enzymes [BR:
cvg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
107102748 (ythdc2)
Spliceosome [BR:
cvg03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
107102748 (ythdc2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
YTH
Helicase_C
OB_NTP_bind
R3H
HA2_C
HA2_N
DEAD
Ank_2
ATPase
AAA_19
Ank
nSTAND3
Ank_4
AAA_22
PhoH
Ank_5
AAA_7
Motif
Other DBs
NCBI-GeneID:
107102748
NCBI-ProteinID:
XP_015257648
Ensembl:
ENSCVAG00000021377
LinkDB
All DBs
Position
Unknown
AA seq
1389 aa
AA seq
DB search
MFKPTEAPKNQARRHNMSSKGSREPKAIHIDEEVKIAVKLALDRFCYSNEKELEFPSSFS
STERAFVHRLAQSLGYSSRSKGKGSSRFLTVRKKETSAKLQPSICLDLSSSSAYFIRSLL
QRFPPSKKERADLHPNAKSGNPLVTESNGSFDRTRASGRLNNGIPMVPKKRTPSVLDAFR
RSLPVTEHQDEIVQLIRDHRVVLVLGETGSGKTTQIPQFLLDDCSRYGKPCRIFCTQPRR
LATIAVAERVAAERGESVGQTVGYHIRLESRVSPKTLLTFCTSGVLLRTLMAGDGSLTTV
THVIVDEVHERDGLTDFLLTKLRDVLQKVPTLKLILSSAALDIDLFLQYFGSCPVIRLKG
KQFEVKQFFLEDILKQTGFSRQNASKYQEEMQRKETQQKRLNEWFEAAGSGAVGATLTHM
FPPGLLDAGGCGDREKESIQQSEKDPEQLKPWLLKEMDSCISSIFLHEDQDAFSQLFNLI
LHERVSVDYTHSETGSTPLMASAARGFLPEMQQLLSMGADINMRACNGWTALDFAEHFQQ
TDAVDLLKTSIPLRQAEDREESTLIHCSPTELNSEAQELLRQYHHSFDDQQVDLDLIMTL
LLNICTNTNEGAVLIFLPGYDEIVTLRDRIFSDDRMSTQSESYQVFTLHSDMQTLDQKRA
MKPTPSGVRKIILSTNIAETSITIDDVVFVIDSGKVKEKSFDTLSRVSMLKSVWICKASV
LQRKGRAGRCRPGICFHLFSRFHYKNMQEFQVPQLLRMPLQELCLQTKLLAPSSCPIADF
LSKAPQPPPTHSIQSAVQMLKTIDALDQNEDLTDLGFHLADLPVESHLGKMVLCGVVLKC
LDPILTIACSLAYRDPFTLPAESSQKRAALQSRMHFTASTFSDHMALLRAFQGWQKARSE
GWDRSFCEKNFLSQSTMDMILGMRTQLLGQLRAIGFVRARGDSDIRDVNLNSENWAVVKA
ALVAGMYPNIVHVNRKASLLCSHREKKVLCHPTSVLSKLQLKENSSRLTQSLPTDWLIYD
EMSRGHRVASVRCCSVVTAVTVAVFAGGTRPVTSTLHEPAGQKRNAADHLLNELSDSEPE
DLAQMKIDDWLVFQLERENAALLCDLRQKWQELFIKRIRCPSKPWSQQDEAVIQTLVSVL
GAEEHEAGLQQPAGVGQRPRPMSSEDGPRSSMRNSRTSPQAPAHSRNDRSKPLLFSDQMK
THSSDGVSKDRPPSSSTSSHSANPDGSDPMAPSSSGKPAPKPGLQRAMLSSVRYFIMKSN
SMRNVEISQEKGIWSTTPSNESKLSQAFLANSLVLLVFSVQGSGHFQGYARMTSVVSQDS
CQDWGLTGLGGLFSVEWIRKESLPFSRTQHILNPWNDNKRVQVSRDGQELEPQAGGQLLQ
LWEGTSGNH
NT seq
4170 nt
NT seq
+upstream
nt +downstream
nt
atgtttaagccgacggaggcccccaagaaccaggcccgccgtcacaacatgtcctccaag
ggctccagggagcccaaagccattcacatcgacgaggaagtcaagatagccgtgaagttg
gcgctggacaggttttgctacagcaatgaaaaagagctggagttcccgtcctccttctcc
agcactgagagggccttcgttcaccgactggcccagtccctgggctacagctccaggagc
aaagggaaagggtcgagtcgtttcctgaccgtcaggaagaaggagacgtccgccaagctt
cagcccagcatctgcctggacctgagctccagctccgcctacttcatccgcagcctgctg
cagaggtttcctcccagcaagaaggagcgagccgacctccatcccaacgccaagagtgga
aatcctttggttacagaatcaaacggcagcttcgaccgaaccagagccagcggccgcctg
aacaacggcatccccatggttcctaagaagaggacgccgtcggtgctggacgctttccgg
cgctcccttcctgtgaccgagcaccaggacgagatagtccagctgatccgggaccaccga
gtggttctggttttgggagaaactggctctggaaaaaccacgcagatcccacagtttctg
ttagacgactgcagccgctacgggaaaccctgcaggattttctgcactcagcccagacgc
ctggcgaccatcgccgtggcggagcgggtggccgcagagaggggggagagtgtgggtcag
actgtgggttatcacatcaggctggagagcagggtctctcccaagacactgctcactttt
tgcaccagtggagttctcctgaggacgctgatggccggagacggcagcctcacgactgtg
acccacgtgatcgtggatgaggtccacgaacgggacggcctgacagacttccttctcacc
aagctgcgggatgttctccagaaggttcccaccctgaagctgattctgtccagcgcagct
ctagatatagatctgttcctccagtacttcggctcctgtccggtgatccgcctcaaaggg
aagcagtttgaggtgaagcagttcttcctggaggacatcctgaagcagacgggcttcagc
aggcagaacgcttccaaataccaggaggagatgcagagaaaggagacgcagcagaaacgg
ttgaatgaatggtttgaggcagcagggagcggtgctgtgggtgcgactttgacccacatg
tttcctccgggcctccttgatgccggcggctgtggggacagagagaaggaatccatccag
cagagtgagaaggacccagagcagctgaagccatggctgctaaaggagatggactcctgc
atctccagcatcttcctgcatgaagaccaggatgctttcagccagctcttcaacctcatc
ctgcatgaacgggtcagcgtggactacacccacagtgagacgggctccacacctctgatg
gcttcagcagcgcgaggattccttccagagatgcagcagctgctctccatgggtgctgac
atcaacatgagggcatgtaacggatggacggcgttggactttgctgaacacttccagcag
acggatgctgtggatctgctgaagacctccatacctctgcggcaggcagaagaccgggag
gaatccactttgatccattgcagccccacggagctgaacagcgaggcacaagagctcctt
agacagtaccaccacagcttcgatgaccagcaggtggacctggacctcatcatgacgctg
cttctcaacatctgcaccaacaccaatgagggcgctgtcctcatatttcttcctggatac
gatgagattgtgacgttgagggaccgcatcttctctgacgataggatgtccacacagtct
gagagctaccaggtcttcacgcttcactcggacatgcagactctggaccaaaagagagcc
atgaagccgactccctccggcgtcaggaagataattctttctaccaacatcgctgaaacc
agcatcaccatcgatgacgtggtcttcgtcatcgattcagggaaagtcaaagagaagtcc
tttgatacgctgagtcgcgtctccatgttgaagtctgtctggatctgcaaagccagcgtc
ctgcagaggaaaggaagggcgggccgctgcagaccagggatctgcttccatctattcagt
cgattccactataagaacatgcaggagttccaggttccacagctgctccggatgccgctg
caggagctgtgtctgcagaccaagctgctggctccttcctcctgtccaatcgctgacttc
ctgtccaaagctcctcagcctcctcccacacattccatccagagcgcagtccagatgctg
aagaccatagacgccctggaccagaacgaagatctgactgacctgggcttccacctggcc
gacctacccgtggagtcccacctgggcaaaatggtgctgtgtggcgtcgtgctcaagtgc
ctggaccccattctcaccatcgcctgcagcctggcctaccgtgacccgttcacgcttcca
gctgaaagctcccagaagagagctgctctgcagagccgcatgcacttcaccgccagcacc
ttcagcgaccacatggcccttctcagagccttccagggatggcagaaggcccgcagcgag
ggctgggatagatccttttgtgagaagaacttcctgtcccagtctaccatggacatgatt
ctgggcatgaggacacagctgctgggacagctccgtgctattggttttgtgcgcgcccgc
ggagacagcgacatccgcgacgtcaatctgaactctgagaactgggcggtggtgaaggcg
gcgctggtggccggcatgtatcccaacatagttcacgtcaacaggaaggcctctctgttg
tgcagtcaccgagagaagaaggtcctttgccatccaacgtctgttctcagcaagctgcag
ctgaaggagaacagctccaggttaacccagagcctccccaccgactggctgatctacgac
gagatgagcagaggtcatcgtgtggccagtgtccgctgctgctccgtggtgaccgccgtt
accgtggccgtgttcgccggcgggaccagaccggtcacctccaccctccatgaacctgct
ggacagaaaaggaacgctgcagatcatctgctgaatgagctgagcgacagcgagccagag
gacctcgcccagatgaagatcgacgactggctggttttccagctggagagagagaacgct
gcgctgctgtgtgacctcagacagaagtggcaggagctgttcatcaagaggatccgctgt
cccagcaagccgtggtctcagcaggacgaggccgtcatccagacgctggtttctgtgctg
ggagccgaggagcacgaggccggcctgcagcagcctgcgggggtcggccagcggcccagg
cccatgtcatcagaggacggaccccggtcctccatgaggaactccaggaccagcccccag
gcccccgctcactccaggaacgacaggtccaaaccgctgctgttctctgaccaaatgaag
acccacagcagcgacggcgtctccaaagaccgccccccctcctccagcacttcctcccac
tcagcgaatccagacggctctgatccgatggccccttcatcctcaggaaagccggccccc
aagcctgggctccagagggccatgctttcatccgtgcgatacttcatcatgaagagcaac
agcatgaggaacgtagagatctctcaggagaaaggcatctggtccaccacaccaagcaac
gagagcaaactcagccaggccttcttggccaacagcctggtcctcctggtcttctcggtg
cagggatccggacacttccagggctacgctcgcatgacatccgtggtcagccaggacagc
tgtcaggactggggcctgacgggcctgggggggctgttcagcgtggagtggatccgtaag
gagagtctgcccttctcccgcacgcaacacatcctcaacccctggaacgacaacaagcga
gttcaggtcagcagggacggacaggagctggagccgcaggctggcggccagctgctccag
ctgtgggaggggacgtctgggaaccactag
DBGET
integrated database retrieval system
