KEGG   Cyprinodon variegatus (sheepshead minnow): 107102963
Entry
107102963         CDS       T06110                                 
Symbol
katnb1
Name
(RefSeq) katanin p80 WD40 repeat-containing subunit B1
  KO
K18643  katanin p80 WD40 repeat-containing subunit B1
Organism
cvg  Cyprinodon variegatus (sheepshead minnow)
Brite
KEGG Orthology (KO) [BR:cvg00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04812 Cytoskeleton proteins [BR:cvg04812]
    107102963 (katnb1)
Cytoskeleton proteins [BR:cvg04812]
 Eukaryotic cytoskeleton proteins
  Microtubules
   Tubulin-binding proteins
    Microtubule severing proteins
     107102963 (katnb1)
SSDB
Motif
Pfam: Beta-prop_IFT122_1st Beta-prop_THOC3 WD40 Katanin_con80 Beta-prop_WDR5 Beta-prop_WDR3_1st WD40_Prp19 Beta-prop_WDR3_2nd WD40_WDHD1_1st Beta-prop_WDR36-Utp21_2nd WD40_CDC20-Fz EIF3I Beta-prop_EML_2 Beta-prop_TEP1_2nd WDR55 WD40_Gbeta Beta-prop_WDR90_POC16_2nd Beta-prop_CAF1B_HIR1 ANAPC4_WD40 Beta-prop_TEP1_C DSE1_N PAC11 WD40_MABP1-WDR62_2nd Beta-prop_WDR75_1st Beta-prop_WDR36-Utp21_1st Beta-prop_EML WD40_MABP1-WDR62_1st NBCH_WD40 Beta-prop_Aladin WD40_RFWD3 Beta-prop_DCAF4 Beta-prop_EIPR1 Beta-prop_WDR41 Beta-prop_IFT140_1st WDR90_beta-prop_4th Beta-prop_SPT8 Beta-prop_NOL10_N Beta-prop_SCAP ASA1 CFAP251_N Beta-prop_WDR19_1st Tricorn_2nd Cytochrom_D1 Beta-prop_IFT140_2nd RMC1_N Beta-prop_VPS8 Beta-prop_HPS5 PROPPIN Beta-prop_RIG_1st Ge1_WD40 WD_LRWD1 Beta-prop_WDR75_2nd DUF8275
Other DBs
NCBI-GeneID: 107102963
NCBI-ProteinID: XP_015257929
LinkDB
Position
Unknown
AA seq 600 aa
CFLSSVLRTLMGHKARVTGLGFHPLGNFMASSSMDTNIKLWDVRRKGYVFRYKGHTDAIR
SLVFSPDGKWLASASDDCTVKLWDLSQGKTITEFKAHSAAVNVVQFHPNEYLLASGSSDR
SIKLWDLEKFSMVGSLEGETAVVRCLAFSPDGSCLYSGASDSLRVFGWEPDRCFDVVPVG
WGKASDLAVIGQQLIGVSHQLSCISSHVVDLSRVKKSAAAVIQDIIQDNKPLQDPAQPRA
AALRRNYDSPATNCSSHRMKRSDNDRRSPDGERRSQSEDEAEQSSAEIHCAADYKEIFTP
KRAISRTPPRIPEPFPAPPDDDGVAAIGRQLKDLMPPSPDKQPVSERSNLSEVEQLLLLQ
APPLASSTPAQRVEPKINSSAKPCNPAPSSQLAPPPQAVQQQRMIPGIRNKPLGLNVADF
LPSTASHQGGALSDDDVLSQISKGHNTMSVILSSRHKNLQTVRSTWAREGVKNAMDAAVS
MNDLSITFFSSLWKLDLCTMILPQIDKLLQSKYESYMQTGSTSLKLIMKHFWTLISETLK
APPAVGVDITREERHQKCRECCRYLKNLGNLVKSRAGQVGRHGSSFKELQLLMAPLDDGL
NT seq 1803 nt   +upstreamnt  +downstreamnt
tgcttcctgtcctcagttctacgcaccctgatgggacacaaggccagggtgacgggtctg
ggcttccacccactggggaacttcatggcctccagctccatggacaccaacatcaagctg
tgggacgtccgcaggaagggatacgtgttccgctacaagggtcacacggacgccatcagg
agtttggtgttcagtccggatgggaagtggctggcctcggcgagcgacgactgcacagtg
aagctctgggatctttctcaggggaaaaccatcaccgagttcaaggcccactccgcagcc
gtcaacgtggtccagttccatcccaacgagtacctgctggcgtccggcagctccgacagg
agcatcaagctgtgggacctggagaagttctccatggtcggctctctggaaggagaaacg
gctgtggtcaggtgcctggcgttcagtccggacggttcctgtctctacagcggcgcgtcc
gactccctgcgggtcttcggctgggagcccgaccgctgcttcgatgtggttcctgttgga
tgggggaaggcgtccgacctcgccgtgatcggccagcagctgatcggcgtgtcccaccag
ctgtcctgcatatcgtcccacgtggtggacctgagcagggtgaagaaaagcgccgccgcc
gtgatccaggacatcatccaggataacaagccgctccaagatccggcgcaacccagagcg
gcagcgctgcggcggaactacgacagtcccgccaccaactgcagctcccacaggatgaag
cgctccgacaatgacaggcggagccccgacggagagaggcggagccagagcgaggacgag
gcagagcagtcgtcggcagagatccactgcgcggccgattacaaagagatcttcacgccg
aagcgcgccatctctcggaccccccccaggatcccggagccgtttccggctcctcctgat
gatgatggtgtggcggccatcgggcggcagctgaaggacctgatgccgccgtctccagac
aagcagccagtcagcgaacgcagcaacctcagtgaggtggagcaattgcttcttctacag
gctccgcccctcgccagctccactcctgctcagagggtcgaacccaaaatcaactccagt
gcaaagccttgtaaccccgccccttccagccagctggcccctccccctcaggcggtccag
cagcagaggatgatcccaggcatcaggaacaagccgctcggactgaacgtggccgatttc
ctgccgtccacagccagccaccagggcggcgctctgagcgacgacgacgttctgtcccag
atcagcaagggccacaacaccatgtctgtgatcctgagcagccgccacaagaacctgcag
acagtccgatccacgtgggcccgcgagggcgtcaagaacgccatggatgctgccgtctcc
atgaatgacctgtccatcacctttttcagctccttgtggaagctggacctgtgcaccatg
atcctccctcagatcgataagctgctgcagagtaaatatgagagctacatgcagaccggc
tccacgtccctgaagctcatcatgaagcacttctggacgctgatctcagagacgctgaag
gctccgcctgccgtcggagtcgacatcacgcgggaggagcgacaccagaagtgccgggag
tgctgccgctacctgaagaacctgggcaacctggtgaagagcagggcggggcaggtcggt
cgccatggcagcagcttcaaggagctgcagctgctgatggcgccgctggatgacggcctc
tga

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