Cyprinodon variegatus (sheepshead minnow): 107102963
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Entry
107102963 CDS
T06110
Symbol
katnb1
Name
(RefSeq) katanin p80 WD40 repeat-containing subunit B1
KO
K18643
katanin p80 WD40 repeat-containing subunit B1
Organism
cvg
Cyprinodon variegatus (sheepshead minnow)
Brite
KEGG Orthology (KO) [BR:
cvg00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
cvg04812
]
107102963 (katnb1)
Cytoskeleton proteins [BR:
cvg04812
]
Eukaryotic cytoskeleton proteins
Microtubules
Tubulin-binding proteins
Microtubule severing proteins
107102963 (katnb1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40
Katanin_con80
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
EIF3I
Beta-prop_EML_2
WDR55
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_CAF1B_HIR1
ANAPC4_WD40
Beta-prop_TEP1_C
WD40_MABP1-WDR62_2nd
Beta-prop_WDR75_1st
Beta-prop_EML
WD40_MABP1-WDR62_1st
NBCH_WD40
Beta-prop_IFT122_1st
Beta-prop_DCAF4
WD40_RFWD3
Beta-prop_EIPR1
Beta-prop_IFT140_1st
WDR90_beta-prop_4th
Beta-prop_SPT8
Beta-prop_SCAP
Beta-prop_Vps41
Beta-prop_WDR19_1st
Beta-prop_RIG_2nd
Cytochrom_D1
Beta-prop_IFT140_2nd
RMC1_N
Beta-prop_HPS5
PROPPIN
Beta-prop_RIG_1st
Ge1_WD40
WD_LRWD1
Beta-prop_WDR75_2nd
Motif
Other DBs
NCBI-GeneID:
107102963
NCBI-ProteinID:
XP_015257929
LinkDB
All DBs
Position
Unknown
AA seq
600 aa
AA seq
DB search
CFLSSVLRTLMGHKARVTGLGFHPLGNFMASSSMDTNIKLWDVRRKGYVFRYKGHTDAIR
SLVFSPDGKWLASASDDCTVKLWDLSQGKTITEFKAHSAAVNVVQFHPNEYLLASGSSDR
SIKLWDLEKFSMVGSLEGETAVVRCLAFSPDGSCLYSGASDSLRVFGWEPDRCFDVVPVG
WGKASDLAVIGQQLIGVSHQLSCISSHVVDLSRVKKSAAAVIQDIIQDNKPLQDPAQPRA
AALRRNYDSPATNCSSHRMKRSDNDRRSPDGERRSQSEDEAEQSSAEIHCAADYKEIFTP
KRAISRTPPRIPEPFPAPPDDDGVAAIGRQLKDLMPPSPDKQPVSERSNLSEVEQLLLLQ
APPLASSTPAQRVEPKINSSAKPCNPAPSSQLAPPPQAVQQQRMIPGIRNKPLGLNVADF
LPSTASHQGGALSDDDVLSQISKGHNTMSVILSSRHKNLQTVRSTWAREGVKNAMDAAVS
MNDLSITFFSSLWKLDLCTMILPQIDKLLQSKYESYMQTGSTSLKLIMKHFWTLISETLK
APPAVGVDITREERHQKCRECCRYLKNLGNLVKSRAGQVGRHGSSFKELQLLMAPLDDGL
NT seq
1803 nt
NT seq
+upstream
nt +downstream
nt
tgcttcctgtcctcagttctacgcaccctgatgggacacaaggccagggtgacgggtctg
ggcttccacccactggggaacttcatggcctccagctccatggacaccaacatcaagctg
tgggacgtccgcaggaagggatacgtgttccgctacaagggtcacacggacgccatcagg
agtttggtgttcagtccggatgggaagtggctggcctcggcgagcgacgactgcacagtg
aagctctgggatctttctcaggggaaaaccatcaccgagttcaaggcccactccgcagcc
gtcaacgtggtccagttccatcccaacgagtacctgctggcgtccggcagctccgacagg
agcatcaagctgtgggacctggagaagttctccatggtcggctctctggaaggagaaacg
gctgtggtcaggtgcctggcgttcagtccggacggttcctgtctctacagcggcgcgtcc
gactccctgcgggtcttcggctgggagcccgaccgctgcttcgatgtggttcctgttgga
tgggggaaggcgtccgacctcgccgtgatcggccagcagctgatcggcgtgtcccaccag
ctgtcctgcatatcgtcccacgtggtggacctgagcagggtgaagaaaagcgccgccgcc
gtgatccaggacatcatccaggataacaagccgctccaagatccggcgcaacccagagcg
gcagcgctgcggcggaactacgacagtcccgccaccaactgcagctcccacaggatgaag
cgctccgacaatgacaggcggagccccgacggagagaggcggagccagagcgaggacgag
gcagagcagtcgtcggcagagatccactgcgcggccgattacaaagagatcttcacgccg
aagcgcgccatctctcggaccccccccaggatcccggagccgtttccggctcctcctgat
gatgatggtgtggcggccatcgggcggcagctgaaggacctgatgccgccgtctccagac
aagcagccagtcagcgaacgcagcaacctcagtgaggtggagcaattgcttcttctacag
gctccgcccctcgccagctccactcctgctcagagggtcgaacccaaaatcaactccagt
gcaaagccttgtaaccccgccccttccagccagctggcccctccccctcaggcggtccag
cagcagaggatgatcccaggcatcaggaacaagccgctcggactgaacgtggccgatttc
ctgccgtccacagccagccaccagggcggcgctctgagcgacgacgacgttctgtcccag
atcagcaagggccacaacaccatgtctgtgatcctgagcagccgccacaagaacctgcag
acagtccgatccacgtgggcccgcgagggcgtcaagaacgccatggatgctgccgtctcc
atgaatgacctgtccatcacctttttcagctccttgtggaagctggacctgtgcaccatg
atcctccctcagatcgataagctgctgcagagtaaatatgagagctacatgcagaccggc
tccacgtccctgaagctcatcatgaagcacttctggacgctgatctcagagacgctgaag
gctccgcctgccgtcggagtcgacatcacgcgggaggagcgacaccagaagtgccgggag
tgctgccgctacctgaagaacctgggcaacctggtgaagagcagggcggggcaggtcggt
cgccatggcagcagcttcaaggagctgcagctgctgatggcgccgctggatgacggcctc
tga
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