Cyprinodon variegatus (sheepshead minnow): 107103012
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Entry
107103012 CDS
T06110
Symbol
tarbp1
Name
(RefSeq) probable methyltransferase TARBP1
KO
K15333
tRNA guanosine-2'-O-methyltransferase [EC:
2.1.1.34
]
Organism
cvg
Cyprinodon variegatus (sheepshead minnow)
Brite
KEGG Orthology (KO) [BR:
cvg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
cvg03016
]
107103012 (tarbp1)
03036 Chromosome and associated proteins [BR:
cvg03036
]
107103012 (tarbp1)
Enzymes [BR:
cvg01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.34 tRNA (guanosine18-2'-O)-methyltransferase
107103012 (tarbp1)
Transfer RNA biogenesis [BR:
cvg03016
]
Eukaryotic type
tRNA modification factors
Methyltransferases
107103012 (tarbp1)
Chromosome and associated proteins [BR:
cvg03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
107103012 (tarbp1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SpoU_methylase
TARBP1
Motif
Other DBs
NCBI-GeneID:
107103012
NCBI-ProteinID:
XP_015258001
LinkDB
All DBs
Position
Unknown
AA seq
1303 aa
AA seq
DB search
EALFNWAPDKSGLLREFWEDYTLVMETLEENQVHVVRPVLNRIDTLIQATANDSEGLGLF
HPSWLLCVYQRMFHSENKSLMREGVCHLLELQVLRQSAFAAAFSQFVVGPFMDVLSETSL
FCRSPGQSVGDCPELAGKLQVFLVNFFMSLPSEDRGCVLLQLIQQLGSKHWCAVPLLFIC
QALSKLPQSPLLRSSGLSALREVLRSTMITHQVLLRGAAQCFLLKSTLSLIDVSEVTRDD
VFSFLMHFRADESLCRGTTLWNELCIWLSEHDGNFKPRILDGDCVDGPAQKETIRLYVQQ
EVIVYLRVPASTGQAERLPDIREADKLARAILLCVDMERRELKKDARETLRSLLSPLLDT
LSRVYTNIYLPVHKSDKSLQLMLRLLQLSTRPRCQQQGLEEDDLMLAIEQAVVEVVDPVQ
NFILRRLCGELQELFDVERADLYLCVLKQLAALSSSLPHGSKNIHQYASPKLIMYSLSVL
KKPTQQIPSVANQVSEAVSMASLAAVCDLLQQGGTNMSSETASALKSLNDYFYTFDTSTK
SQPSLGNINKRLMKPQLLDSTSDLVTQGLLQQDWGRIAASFLRDQWVCLNFLIRSVGIPK
VSETLRAALSCSVEALALLPSDLVLPVLNFMNMALPQLVDDEEDLCVQAVNLSWELVQGL
SNNAHDFWPALQGFISIAFQHELLKLNHQQAPALTAALKRIFTEVVELSQSKSGVLGVLV
QHCTQTWLPGEGGSSELADGIFSSVFNHLDIVTEACLYGPVFRRDQRLIQDVQIFVEQLG
ENCAANVAVASDNRDDQLPRTCVLTFLSRLDPCNQQHQRLIEELVVELLRKDSLISKAKV
RYYSNSLQHRIKNRAWQTLLLLLPKLTEEFVATLLNSVFEAGFCSNQPSVKYLIEWMMIL
ILVKYPHHLDRFWTCFSFDHEKTKTSICTFLSVLVHISVIIPHVEDKVDQLRKALDIILQ
SCFNHNFSVRLYALVALKRVWSLAESVTEGDAFRGLSSVVTACLNQAEAMQNSGNANKNW
LRIQGHFFFSAFHPIRDYSLETIFYTFPSLSELADDEWIPPWKFEKLSFACESLSTPLRN
PAPDLGRLQPGDWVQQDRSEQDKEERWAEVQKKITPWRLGVHEQEPELKLVPAQRAARLG
KQHGTLLVVASLIDKPTNLGGLCRTCEIFGASGLVLDSLHHLNDKHFQSLSVSSELWLPL
FEVKPVELTDFLQVKKSEGYCIVGVEQTANSQSLQDFKFPEKTLLLLGNEREGIPANLLQ
MLDVCVEIPQQGIIRSLNVHVSAALLIWEYTRQHLITGTNEAD
NT seq
3914 nt
NT seq
+upstream
nt +downstream
nt
aggaggcgttgtttaattgggcccctgacaagagtggactgctaagagagttctgggagg
attacacgctggtgatggagacgctggaggagaatcaggttcatgttgtccgcccagttt
taaacagaatagacactttaattcaagcaacagcgaatgatagtgaagggttaggcctgt
tccacccctcctggctgctgtgtgtttaccaacgcatgttccacagtgagaataaatcct
tgatgagagaaggagtgtgccatctgcttgagctacaggttctaaggcagtcagcatttg
ctgcggcattttctcagtttgtcgtcggtccctttatggatgttctctctgaaacatccc
ttttctgtaggtcacccgggcagagtgtaggagattgtccggagctggcgggtaaactcc
aagttttcctggtcaacttcttcatgagcctgccatcagaggacagaggttgtgttttgc
ttcagctgattcagcagctcggatcaaagcactggtgtgcagtaccactcctcttcatct
gccaggctttgtccaaactccctcagagtcctctgctgaggagcagcgggctctctgctc
ttcgggaggtacttcgctctactatgatcacccatcaggtcctgctgagaggagctgcac
agtgttttttactaaagagcaccctttctctaatagatgtgagtgaagttaccagagatg
atgtgttcagtttcctgatgcatttccgtgctgatgagtctttgtgcagagggacaacac
tatggaatgagttgtgcatctggttgtcggaacatgatggaaatttcaagcccagaattc
tggatggtgattgcgtcgatggcccagcacaaaaagaaacaataagactctatgttcaac
aagaagtaatcgtttatcttcgtgttccagcaagcacaggtcaggcagaaaggttacctg
acattagagaggctgataagttggccagggccattctgctctgtgtggacatggagagga
gggaactgaagaaagatgccagggaaactctgaggtcattgctgtctccactactggaca
ccctgagcagagtctacaccaatatctacctgcctgtccataagagcgacaagagtctgc
agcttatgttaagactgttgcagctcagcacaaggccacgttgtcagcagcaaggattgg
aagaggacgatttgatgttggccattgaacaagctgttgttgaagttgtggatccagtcc
agaattttatcctaaggaggctctgtggggagctacaggagctctttgacgttgaacggg
ctgatctgtatctctgtgtcctgaagcagctggctgcactgagcagctctctacctcatg
gctctaagaacattcatcagtatgcttcgcctaaactcatcatgtatagcctttcagtgt
taaaaaagccaacccagcagatcccctctgttgcaaaccaggtgtctgaggcggttagta
tggcatctttggctgctgtgtgtgatctgctgcagcagggagggactaacatgtcatcag
agactgcctctgccctaaagtccctcaatgattatttctacacttttgacacttctacaa
aatctcaaccatctcttggaaacattaataaacgtctgatgaaaccacagctgttagata
gtacaagtgaccttgtgactcaaggccttctgcagcaggactgggggcgcattgctgcca
gcttcctgcgggaccagtgggtttgtctaaacttcctgatcaggtctgtagggatcccca
aagtgtctgagaccctcagggctgctctgagctgcagcgttgaggctctggctctgctac
ccagtgaccttgtcctgcctgtgttgaactttatgaacatggcgctgccacagctggtgg
acgatgaggaggatctctgtgtgcaggctgtcaatctgagttgggagcttgtacaggggc
ttagcaacaatgctcatgacttctggccagccttacaaggcttcatttctatagccttcc
aacatgagctgctgaagctgaaccatcagcaggctccagctctgaccgcagcgctgaaaa
ggatttttacggaggtagtggagctgtctcagtcaaaaagtggagtacttggtgtcctag
ttcagcactgtactcagacatggctgcccggtgagggaggcagcagtgagctggctgatg
ggattttttctagcgtctttaaccacctggatatagtcactgaggcttgtctatatggac
cagtgttcaggagagatcaacgactcatccaagatgtccaaatattcgtggagcaacttg
gtgaaaattgtgcagctaatgttgcagttgctagtgataacagggacgatcagctacccc
gcacatgtgtgctgaccttcctcagccgcctggatccctgtaatcagcagcatcagagac
tcatagaggagttagtggtggagttactgagaaaggacagcctcatatccaaggctaaag
tccgttactatagcaactccctgcagcatcgcatcaaaaacagagcatggcaaacactgc
tactgctgcttcccaaactcacagaggaatttgttgccactctgttgaacagcgtgtttg
aagctggattttgtagcaaccagccttctgtgaagtacctgattgaatggatgatgattc
tcatccttgtcaagtatcctcatcatttggacagattctggacctgcttcagctttgacc
acgaaaagaccaagaccagcatttgcaccttcctgtctgtcctggtacacataagtgtca
ttattccacatgttgaggataaagtcgaccagctgcgtaaagcactggacatcatcctgc
agtcgtgtttcaaccacaactttagtgtgcgtctgtatgccttagtggccctgaagaggg
tgtggagccttgcagaaagcgtgacagagggtgatgccttcagaggactgtcgtctgtgg
tgacggcttgtctgaaccaggctgaggccatgcagaactctggaaatgccaacaagaact
ggctgaggattcaggggcacttcttcttcagtgcttttcatcccatccgggattatagtc
tggaaaccatcttctacacgtttcctagtctgtcagagttggctgatgatgagtggatcc
caccatggaagtttgaaaagctctcatttgcttgtgaaagtctatcaacgccgttgagga
atcctgctccagatttgggccggctccagcctggagattgggtccagcaagaccgaagcg
agcaggataaagaggagcgctgggctgaagtgcagaagaagatcacaccctggaggttgg
gggtccatgagcaggaacctgaactaaagctggttccagcacagagggcggctcggctcg
gcaagcagcacggcaccctgctggtggtggcctcactgatcgacaaacccaccaatctgg
gaggtctttgcaggacatgtgagatattcggggccagtggtctggttctggacagtctcc
accatctcaatgacaaacacttccagtccctgagcgtctcatccgagctttggcttcctt
tgtttgaggtgaagcctgtggagctcacagatttcctgcaggtaaagaagagcgaaggtt
actgtatcgtcggcgtggagcagacagccaatagtcagagcctgcaggactttaagttcc
ctgagaaaacgctgcttcttctgggcaatgaacgggaaggtattcctgccaatttgctcc
agatgttggacgtgtgcgtggagatccctcaacaggggatcatccgttccctcaacgtgc
acgttagtgccgcgctgttgatctgggagtacacacggcagcacctcatcactggaacaa
atgaagccgactga
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integrated database retrieval system
