KEGG   Cyprinodon variegatus (sheepshead minnow): 107103054
Entry
107103054         CDS       T06110                                 
Name
(RefSeq) collagen alpha-1(II) chain-like
  KO
K19719  collagen type II alpha
Organism
cvg  Cyprinodon variegatus (sheepshead minnow)
Pathway
cvg04510  Focal adhesion
cvg04512  ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:cvg00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    107103054
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    107103054
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   00536 Glycosaminoglycan binding proteins [BR:cvg00536]
    107103054
Glycosaminoglycan binding proteins [BR:cvg00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   107103054
SSDB
Motif
Pfam: Collagen COLFI VWC
Other DBs
NCBI-GeneID: 107103054
NCBI-ProteinID: XP_015258059
LinkDB
Position
Unknown
AA seq 1454 aa
MLSFMDSRTLLLLVASHVFLLAVVRCQREDNQEEDFICSQDGQSYNDKDIWKPEPCRICV
CDKGMVLCDDIVCEELKDCPKPEIPFGECCPICAADQPSSFGAKGQKGEPGDITDVVGPR
GPAGPMFVLLSYLMMTGFIFPLQNFAAQMAGGFDEKAGGGAQMGVMQGPMGPMGPRGPPG
PTGAPGPQGFQGSPGEAGEPGQAGPMGPRGPSGPPGKPGDDGEPGKPGKPGDRGPTGPQG
ARGFPGTPGLPGIKGHRGYPGLDGAKGETGAVGAKGEAGAPGESGSPGPMGPRGLPGERG
RPGSTGAAGARGNDGLPGPAGPPGPVGPSGAPGFPGSPGAKGEAGPTGARGPEGAQGPRG
ESGTPGSPGPSGASGNPGTDGIPGSKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKG
TSGDPGIPGFKGEAGPKGEIGPVGPQGAPGPQGEEGKRGPRGEPGAAGPLGPPGERGAPG
NRGFPGQDGLAGPKGAPGERGPPGTSGAKGATGDPGRPGEPGLPGARGLTGRPGDAGPQG
KVGPSGAPGEDGRPGPPGPQGARGQPGVMGFPGPKGATGEPGKSGEKGLAGAPGLRGLPG
KDGETGAAGPPGPAGPAGERGEQGQPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAAG
ATGPRGERGFPGERGAAGAQGLQGPRGLPGTPGTDGPKGAIGPAGGPGAQGPPGLQGMPG
ERGAAGIPGPKGDRGDVGEKGPEGASGKDGARGLTGPIGPPGPAGPNGEKGESGPAGPSG
PAGVRGAPGDRGETGPPGPAGFAGAPGADGQPGIKGEQGEAGQKGDAGAPGPQGPSGAPG
PAGPTGVSGPKGARGAQGPPGATGFPGAAGRVGPPGPNGNPGPPGPAGSPGKDGPKGVRG
DGGPPGRQGDPGLRGPAGAPGEKGDAGEDGPPGPLGPSGPQGLAGQRGIVGLPGQRGERG
FPGLPGPSGEPGKQGASGGPGDRGPPGPVGPPGLTGPAGEPGREGNPGSDGPPGRDGSPG
IKGDRGNTGPAGAPGAPGAPGAPGPVGPTGKQGNRGESGAQGPSGPPGPAGARGMPGPQG
PRGDKGEGGEAGERGQKGHRGFTGLQGLPGPPGQPGDQGATGPAGPSGQRGPPGPVGPAG
KDGSNGLPGPIGPPGPRGRTGDSGPAGPPGNPGPPGPPGPPGPGIDMSAFAGLGQTEKSP
DPLRYMRADQAAGNLRQHDAEVDATLKSLNNQIENIRSPEGSKKNPARTCRDLKLCHPDW
KSGEYWIDPNQGCTVDAIKVFCNMETGESCVNPRPAKIPRKNWWSSKSKDSKHVWFGETM
NGGFHFSYGDDSLAPNTAAIQMTFLRLLSTEASQNITYHCKNSVAYLDASNSNLKKAVLL
QGSNDVEIRAEGNSRFTYSVMEDSCTRHTGQWGKTVIEYRSQKTSRLPIVDIAPMDIGGA
DQEFGVDIGAVCFL
NT seq 4365 nt   +upstreamnt  +downstreamnt
atgttgagctttatggattccaggactttactgcttcttgtagcatcccacgttttctta
ttagcagtggtgagatgtcagcgggaagataaccaagaggaggattttatctgtagtcaa
gatggacagagttataacgacaaggacatatggaaaccagagccttgtcgcatctgtgtg
tgtgacaagggaatggtcctatgtgatgatattgtctgcgaggagctaaaagactgcccc
aaacctgaaatcccattcggagagtgttgccccatctgcgctgctgaccagccttcatct
tttggagctaagggtcaaaaaggtgaacctggagacattactgatgttgtaggaccgaga
ggaccggctggcccaatgtttgttttattatcctacttgatgatgaccggctttattttt
cctctccagaactttgctgctcagatggcgggtggtttcgatgagaaggccggcggtgga
gcacagatgggtgtgatgcaaggaccaatgggccccatgggacccagaggaccacctggc
cccacaggagcacctggcccacagggtttccaaggcagcccaggagaggctggagagccc
ggccaagctggccccatgggtccccgtggcccctctggacctcctgggaaacctggagat
gatggggaaccagggaaaccagggaaaccaggagaccgtggacccactggacctcaagga
gctcgcggtttcccaggaactcctggtctgcccggcatcaagggacacagaggttatcct
ggtcttgatggtgcaaagggagagactggtgctgttggtgcaaagggtgaggccggtgcc
cccggtgagagtggctcacctggacccatgggaccacgtggcttgcctggggagagagga
cgtcccggatccaccggagctgctggtgcacgaggaaatgatggcttgcctggtcctgct
ggtcctccaggccctgttggtccatctggggctccgggcttccctggatctcctggtgca
aagggtgaagctggtcctactggtgcacgtggtcccgagggagctcaaggaccccgtgga
gagtcgggcactcctggatcacctggaccctctggtgcctctggtaaccctggcactgat
ggtattcctggatctaaaggatcagcaggtgctccaggtattgcaggcgctcctggtttc
cccggacctcgtgggcctcctggacctcagggagcaactggacctcttgggccaaaagga
acatctggagatccaggtataccaggattcaagggggaggctggaccaaaaggagaaatt
ggaccagtaggccctcagggagcccctggcccacagggagaagaaggcaagagaggaccc
agaggtgagcctggtgctgctggacctctaggacctccaggagaaagaggtgcccctggt
aatcgtggtttccccggtcaggatggtctggctggtcccaagggagccccaggtgagcgt
ggaccaccagggaccagcggtgctaagggagccactggtgaccccggccgtcctggtgag
ccagggcttcctggtgcaaggggtttgactggtcgtcctggtgatgctggaccccagggt
aaagtcggaccttctggagctcctggtgaggatggacgtccaggaccccctggccctcag
ggagccagaggacagcctggtgttatgggatttcctggaccaaagggagcaactggtgaa
cctggaaaatctggtgagaaaggactggccggagctcctggtcttagaggtctgcctgga
aaggatggagaaacgggtgcagctggaccccctggccctgctggccctgctggggagaga
ggagagcaaggacagcccggtccctccggtttccagggtctccccggaccccctggccct
cctggtgaaggaggcaaacctggagaccagggcgttccaggagaggctggagctgctggt
gctactggacccagaggagagcgtggttttcctggagagagaggagctgctggtgcccag
ggtttgcagggtcccagaggcctacctggaactcctggaactgatggacccaagggagcc
attggacctgctggtggtccaggagctcagggaccacccggcctccagggaatgccagga
gagagaggtgctgcaggcattcctggacccaaaggagacagaggtgatgttggagagaaa
gggcctgaaggtgcttccggcaaagatggtgctagaggtcttactggtccaattggtcct
cctggtccagctggtccaaatggtgagaagggtgaatctggacctgctggaccatccggg
cctgctggtgttcgtggtgcacctggtgacaggggagagactggacctcctgggcctgct
gggtttgctggagctcctggggctgatggtcagcctggaattaagggagagcaaggagaa
gctggacagaaaggagatgctggtgcacctggaccacaaggaccatccggtgcccctgga
cccgcaggtcctactggagtttctggaccaaaaggtgctcgtggtgctcagggtccccct
ggtgccactggtttccctggagctgctgggcgagttggacctcctggccccaatggcaac
cctggacccccaggtcctgctggctctcctggtaaagatggaccaaaaggtgtgagagga
gatggtggacctccaggcagacagggtgatcctggactacggggacctgcaggagctcca
ggagagaagggagacgctggagaggatggaccccctggtccactgggtccctcaggtccg
cagggattggctggtcagcgtggtattgttggtctgcctgggcagagaggagaaagaggt
ttccctggtctccccggaccttctggggagcctggaaagcagggagcttctggtggtcct
ggagaccgtggaccccctggacccgtcggaccacctgggcttactggacctgctggagag
cctggcagagagggcaaccctggatctgatggacctcctggtagagatggttctcctgga
attaagggtgaccgtggcaacactggtcctgctggcgcacctggtgcaccaggtgctcct
ggtgctcctgggccagtcggtcctactgggaaacagggaaacagaggggagtctggtgct
caaggaccatctggacctccaggaccagctggtgccagaggaatgcctggaccgcaagga
ccacgtggcgataagggtgaaggtggagaggccggtgagcgaggacagaagggacacaga
ggtttcactggtctgcagggtcttcctggaccacctggtcagcctggagaccagggtgcc
actggacctgctgggccatctgggcaaagaggaccacctggacctgttggtcctgctgga
aaagatggttcaaatggcttaccaggacccatcggaccccctggacctcgtggtcgcact
ggagactcgggtcctgctggtccccctggaaaccccggaccccctggtcctcctggtccc
cctggtcctggcattgacatgtctgcctttgctggtctgggtcaaacagaaaagtcccca
gatcctctcaggtacatgagggctgaccaggccgcgggcaatctccgtcaacacgatgca
gaggtcgacgccactctcaagtctctcaacaaccagattgagaacattcgcagcccagag
gggtccaagaagaaccctgctcgcacctgcagagatctaaagctgtgccaccctgactgg
aagagcggtgagtattggattgatcccaatcagggctgcaccgttgatgcaatcaaggtc
ttctgcaatatggagactggggagtcctgtgtgaatcctaggcctgctaagatcccacgc
aagaactggtggtccagcaagagcaaagacagcaaacatgtctggttcggagagacaatg
aatggagggttccatttcagttatggtgatgacagcctggcccctaacaccgccgctatt
cagatgactttcctgaggttgctttccactgaggcttcccaaaacatcacttaccactgc
aagaacagcgtggcatacctggatgcctcaaatagcaacctgaagaaggccgtgctgctc
caaggctccaacgatgtggaaatcagagccgagggcaacagccgcttcacctacagcgtc
atggaggacagttgcacgagacacacaggacagtggggtaagacagtgattgaatacagg
tcgcagaagacctctcgtctgcctatcgtagacattgctcccatggatatcggtggagca
gaccaggagtttggagttgatatcggggcagtttgcttcttgtaa

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