Cyprinodon variegatus (sheepshead minnow): 107103464
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Entry
107103464 CDS
T06110
Name
(RefSeq) tenascin-like
KO
K06252
tenascin
Organism
cvg
Cyprinodon variegatus (sheepshead minnow)
Pathway
cvg04510
Focal adhesion
cvg04512
ECM-receptor interaction
cvg04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
cvg00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
107103464
04518 Integrin signaling
107103464
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
107103464
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
cvg00536
]
107103464
Glycosaminoglycan binding proteins [BR:
cvg00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
107103464
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
fn3
EGF_TEN
Fibrinogen_C
EGF_Teneurin
EGF_2
EGF_Tenascin
FN3_DSCAM-DSCAML_C
DUF7949
Fn3_Dep-1_3rd
Pur_ac_phosph_N
Fn3_Dep-1_2nd
EGF
fn3_2
NDNF
hEGF
REJ
Motif
Other DBs
NCBI-GeneID:
107103464
NCBI-ProteinID:
XP_015258670
Ensembl:
ENSCVAG00000017632
LinkDB
All DBs
Position
Unknown
AA seq
1752 aa
AA seq
DB search
METKGFLFSCITAVVLLQLSSAGLVKKVIRHRRETLMPKKTQENLTLPHPEQPVVFNHVY
NINVPSTSLCSVDLDSPGSTGMKHKSGALDMQSTEHMEHTVDGDNQIVFTHRINIPKQAC
GCDNQLPDLKDILNRLEMLESELSSLREQCSSGAGCCAAQVTGEVSTKPFCNGRGNWSID
TCSCSCEPGWKGPNCSESECPNDCQDQGRCVDGRCECFEGFGGDDCGIELCLLDCGDYGH
CVEGSCLCEEGFIGEDCSQTNCLNNCLGRGRCVEDECVCDEPWTGFDCSELICPNDCYDR
GRCINGTCLCDEGFTGEDCGELSCPGNCNNRGICVSGKCVCQAGYTGEDCSKLTCPKDCN
ERGHCSNGKCICDPGFEGEDCSVLSCPDNCSNRGQCINGECICDIGYQGEDCSKLSCPNN
CQDQGRCVDGECVCEKGFAGEDCSIKTCPKDCLGRGECIDGKCVCFVGFTGKDCSELTCP
NDCLNRGQCVDGQCVCHQGFTGEDCSEKTCPKNCHDRGQCVDGQCVCHQGFTGEDCSEKT
CPKNCHDRGRCVDGICLCYEGFTGLDCSVLTCPGDCYNQGRCENGEDFFSSHREEVLVSQ
QHKWKKEDQQMSIFKPFLEAAPFPRLFTVSPPEDLSVIEVTPETVDLSWDNKMKVTEYLI
TYVPTAHGGLELEMRVPGDEKEATVRELEPGVEYLINVYAVLSNQRSVPVSARVATHLPE
PEGLKFKSVRETSVEVQWDPLDIPFDGWNLIFRNTKEEDGEILNPLGRPETSFEQSGLGP
GQEYEVKLEVVKNNKRGPPASKNIVTMIDAPSQVDVRDVTDTTALITWFQPVAHVDGISV
SVWPSFNPGDRNVVELPSAESQYHLAGLSPDTQYQVSLAAKRGEQSSEPVLDSFLTDLDA
PRDLQTVDITDESITVEWRNSRAEVDQYRIKYGPLSGGDHGELLFLPGPKDSTQAKITGL
KPGTEYGMGVTAVKDERESRPTTTNAVTALDAPKDLSVAEVTETTMTLEWKRPVAKLDSY
RLVYVSADGQRAEDTVAASSDSHTLRGLNPGMMYTISMTAERGRRNSVPATVSAPTAEEM
PAVTNVTVSDVSWESFLLSWSADDGAFQAFLIQLTDAETGAEWQNYTVPGDVRSLALSGL
SPSTWYSAGLYGVHQGALLDPVFADTITETEPEVQALQVSNVTADGFTLAWTAEEDAFDT
FVLMLTAAEDPSRPKELVLGGEERNVTLSDLMQDTEYNVEVFGLILGRRSKSVRERVRTD
LGSPKGIRFSGVTDTSATVHWLTPRARVDRYIVTYMPADGGVAKTLTVDGSMSHTVLPNL
TPGVTYEVIIVAVKQERESEPGSDSVTTALDKIRGLTAINITDTEALLLWQPAIATVDGY
VITYSADTVTPVMERVSGNVVEFEMSSLKPATLYTVKVYAVRDSAKSAATTTEFTTDVDA
PQDLAVTNIQTESAMLTWKPPRADITGYLLHFESAVGTIHEVVLGPTAVSYNMADLKAST
EYSVRMEALAGPKRSQVVSTIFTTTGVLYRHPRDCSQALLNGDTSSGVHTIYLGGDESQP
LQVYCDMSTDGGGWIVFLRRQSGRLEFYRNWKNYTAGFGDMNDEFWLGLSNLHKITSGGQ
YELRVDLRDKGEMAYAQYDKFSVSEPRTRYKVHVGGYSGTAGDSMTYHHGRPFSTYDHDN
DIAVTNCALSYKGAFWYKNCHRVNLMGRYGDNSHSKGVNWFHWKGHEHSIEFAEMKIRPS
NFRNLEGRRKRS
NT seq
5259 nt
NT seq
+upstream
nt +downstream
nt
atggaaaccaaaggtttcctcttcagctgcataactgcagtggtgctcctccagctctcc
agcgctggccttgtcaagaaggtcatccgccaccggagggagaccctgatgcctaaaaaa
acccaggagaacttgactcttccccatcctgagcagcctgtggtcttcaaccacgtctac
aacatcaacgtcccctccacctccttgtgctctgtggacctcgactcaccaggcagcacc
gggatgaaacacaagagcggcgctctggacatgcagagcactgagcacatggagcacacg
gtcgatggcgacaaccagatcgttttcactcaccgtatcaatatccccaaacaagcatgt
ggctgcgacaaccagctgccagacctcaaagacatcctgaacagactggagatgctggag
tcggagctgtctagtctgagggagcagtgcagcagtggagccggctgctgtgcagctcag
gttacaggagaggtgtcaacgaagccattttgtaacggacgtggaaactggagcattgac
acgtgcagctgctcctgtgaacctggatggaaaggacccaactgctccgagtctgagtgc
cccaatgattgccaggaccagggtcgctgtgtggatggtcgatgcgaatgcttcgagggc
ttcggtggggatgactgcgggatcgagctctgcctgctggactgtggcgattatggccac
tgtgttgaaggctcctgtctctgtgaggaaggcttcatcggcgaggactgttctcagacc
aactgccttaacaactgcctgggtcggggccgctgtgtggaggacgagtgcgtctgtgat
gaaccgtggacaggttttgactgctctgagctcatctgtcctaacgactgctatgaccgc
ggacgctgcatcaacggcacttgcctttgtgatgagggcttcactggagaggactgcggg
gagctcagttgtcctggaaactgcaacaaccgtggaatatgcgtgagcggcaaatgtgtg
tgccaggctggctacactggagaggactgctcaaagcttacttgtcccaaagactgcaat
gagagaggccactgctccaatgggaagtgcatatgtgatcctggctttgaaggtgaagat
tgctcagtcctctcatgccctgacaactgcagcaacaggggccagtgcatcaatggggaa
tgcatttgtgacatagggtaccaaggagaagactgcagcaagctttcctgcccaaacaac
tgccaagaccagggccgctgtgttgatggggagtgcgtatgtgaaaagggctttgcaggt
gaagactgcagtatcaagacatgccccaaagactgccttggaagaggagagtgtattgat
ggaaagtgtgtctgttttgtgggcttcactggaaaagactgcagcgagctaacctgcccc
aatgactgcctgaaccgtggtcaatgtgtggatggtcagtgtgtttgccatcaaggtttt
actggtgaagactgcagcgagaagacttgccctaagaactgccatgacagaggtcaatgt
gtggatggtcagtgtgtttgccatcaaggttttactggtgaagactgcagcgagaagact
tgccctaagaactgccatgacagaggtcgttgtgtcgacggtatctgtttatgttatgaa
ggttttactgggctggactgctctgtcctcacctgtccaggagactgctataaccagggt
cgctgtgaaaacggagaagactttttctcctcccatcgtgaggaagttctggtgtcacag
cagcacaaatggaagaaagaagaccaacaaatgtccatctttaaaccgtttttagaggcc
gctccttttccccgtctcttcacagtctcgccacccgaggacctgtctgtgatcgaggtg
actccagaaacagtcgacctttcctgggacaacaagatgaaagtgacagagtacctaatc
acctacgtgcccacggcccacggaggtctggagctggagatgcgggtgcctggagacgag
aaggaggccaccgttcgagagcttgagcccggtgtggagtacctgatcaatgtctacgcc
gtactcagcaaccagaggagcgtccctgtcagcgcacgagtcgctactcatcttccagag
ccggagggtctgaagtttaagtctgtgagagaaacgtcagtggaagtgcagtgggatcca
ctggatatcccatttgatggctggaacctgatcttcaggaacacaaaagaggaggacggt
gagatcctgaaccccctcggccgcccagagaccagctttgagcagtccggtctgggtcca
ggtcaggagtacgaggtcaaactggaggtggtgaaaaacaacaagcgtggacctcctgct
tctaagaacatcgtcacgatgatcgatgctcctagtcaggtggatgtacgggatgtgacg
gacaccacggcgctcatcacctggttccagcctgtggcccatgtggatggcatcagcgtc
tccgtctggcccagctttaaccctggagatcggaatgtagtggagctaccgtctgctgag
agccagtaccacctggccgggctcagccccgacacgcagtaccaggtgtccttggcagct
aagaggggagagcagagcagcgaacccgtgcttgactccttcctcacagacctggatgct
cccagagacctacagacggtggatataacagacgagagcatcactgtagagtggcggaac
agcagggctgaagtggatcagtaccggatcaagtacggcccgttatctgggggtgatcac
ggagaactgctcttcctgccgggacccaaggactctacgcaggcaaagatcaccggcctg
aagccaggaacggagtacgggatgggcgtgacggcggtgaaagatgagcgggaaagtcgg
cccaccaccaccaacgcagtcacagccctggatgcccccaaagacctgtctgtagcagag
gtaacggagaccaccatgacgctggagtggaagcggccggtggccaaactggactcctac
aggctggtctacgtgtctgctgatggtcagagggctgaagacacggtggcagccagctct
gactctcacaccctgaggggcctgaaccctggcatgatgtacaccatcagcatgaccgca
gagcggggccgcaggaacagcgtccccgccaccgtctcagctcccacagcggaggagatg
ccagcggtgaccaacgtcacggtcagcgatgtgtcctgggagagtttcctcctgtcctgg
tcggctgatgacggggccttccaggcctttctgatccagctcactgacgctgagacgggc
gctgagtggcagaactacacagtgcccggcgacgtgcgcagcctcgcgctctcaggcctc
tcccccagcacctggtacagcgcggggctgtacggggtgcaccagggggcgctcttagac
ccggtgtttgcagacaccattacagagaccgaaccagaagtgcaggctctccaggtgtcc
aatgtgactgctgatggttttacgctggcctggacggcggaggaggacgccttcgacacc
tttgttctgatgcttactgcggccgaggaccccagccgaccaaaggagctggttctgggt
ggcgaggagagaaacgtcacactgagcgatctgatgcaggacaccgagtacaatgttgag
gtgtttgggctcattttgggaagacgctccaagtctgtaagagagcgggtgagaacagac
ctcggctctccaaagggcatccgcttctccggagtgaccgatacgtccgccaccgtccac
tggctgactcccagggcccgggtggaccgctacattgtcacctacatgcctgctgatgga
ggtgtggccaagaccctgacagtggatggctccatgtcacacaccgtcctgccaaacctg
acgcctggggtcacctatgaggtcatcatcgttgccgtcaagcaggagagagagagtgag
cctggatctgacagcgtcaccacagctctggataagatccgtggactgacagcaatcaac
atcacagacactgaggccctactgctgtggcaacccgccatcgccaccgtagatggttac
gtcatcacatacagcgcagacactgtgactccagtgatggagcgtgtgtcaggaaacgtt
gtggagtttgagatgagctccctgaagccagccacactctacacggtgaaggtctacgct
gtgagggactcagccaagagtgcagccactaccacggagttcaccacagatgttgacgct
ccacaggacctggcggtcaccaacatccaaacagagagcgccatgctcacctggaagccc
ccccgcgctgacatcactggctacctgctccactttgagtctgctgtcggcaccatccat
gaggtggttctaggtcctaccgccgtgtcctacaacatggccgacctcaaggcttccaca
gaatactccgttaggatggaggctctggctggtcccaagaggagccaagtggtctctacc
atcttcaccaccaccggcgtgctgtacagacaccccagggactgctcacaggccctactg
aatggcgacacctcatcaggtgttcacaccatctacctgggaggagatgagagccaaccc
ctgcaggtctactgtgacatgagcaccgatggaggcggctggattgtcttcctgcggcgt
cagagcggcaggctggagttttaccgtaactggaagaactacacggctggttttggtgac
atgaacgatgagttctggctcggtctgtccaacttgcacaagatcacatctggaggacag
tacgagctgcgggttgatctgagagacaaaggagagatggcctacgctcaatatgacaag
ttttctgtctctgagcctcggacgcgctacaaagtccatgtgggaggatatagtgggaca
gcaggggactctatgacctaccatcatggccgccctttctccacctatgaccacgacaac
gacatcgctgtgaccaactgcgctctgtcctataagggagcattctggtacaaaaactgt
catcgggtcaacctgatgggtcgctatggtgataacagccacagcaagggggtaaactgg
ttccactggaaaggccacgaacattccatcgagttcgccgagatgaagatccggccttca
aacttcaggaatctggagggaaggaggaaacgctcctaa
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