Cyprinodon variegatus (sheepshead minnow): 107103486
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Entry
107103486 CDS
T06110
Symbol
atg16l1
Name
(RefSeq) autophagy-related protein 16-1 isoform X1
KO
K17890
autophagy-related protein 16-1
Organism
cvg
Cyprinodon variegatus (sheepshead minnow)
Pathway
cvg04136
Autophagy - other
cvg04140
Autophagy - animal
cvg04621
NOD-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
cvg00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
107103486 (atg16l1)
04136 Autophagy - other
107103486 (atg16l1)
09150 Organismal Systems
09151 Immune system
04621 NOD-like receptor signaling pathway
107103486 (atg16l1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cvg04131
]
107103486 (atg16l1)
03029 Mitochondrial biogenesis [BR:
cvg03029
]
107103486 (atg16l1)
Membrane trafficking [BR:
cvg04131
]
Autophagy
Autophagosome formation proteins
Atg12 conjugation proteins
107103486 (atg16l1)
Others
Specific organelles associated proteins
Auto phagosome
107103486 (atg16l1)
Mitochondrial biogenesis [BR:
cvg03029
]
Mitochondrial quality control factors
Mitophagy factors
Autophagy-related proteins
107103486 (atg16l1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40
ATG16
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_EML_2
WD40_CDC20-Fz
WDR55
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
WD40_MABP1-WDR62_2nd
Beta-prop_EML
WD40_MABP1-WDR62_1st
Beta-prop_WDR75_1st
Beta-prop_SCAP
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_C
WDR90_beta-prop_4th
ANAPC4_WD40
Beta-prop_IFT122_1st
Beta-prop_DCAF4
NBCH_WD40
Beta-prop_RIG_2nd
eIF2A
Beta-prop_EIPR1
WD40_RFWD3
Beta-prop_IFT140_1st
Beta-prop_NWD2_C
Beta-prop_HPS5
Beta-prop_SPT8
Beta-prop_DCAF12
DUF4200
HEF_HK
WH_CYT4
HALZ
Phage_GPO
DUF7310
Motif
Other DBs
NCBI-GeneID:
107103486
NCBI-ProteinID:
XP_015258695
Ensembl:
ENSCVAG00000017009
UniProt:
A0A3Q2FZT4
LinkDB
All DBs
Position
Unknown
AA seq
604 aa
AA seq
DB search
MAERRAECTWKRHILEQLKLRDRVQRHTFEEIVHQYNRLLEKSDLQTVLTERYQTDKYDV
QRGHEASSVDSSRSDTLQQEMAQMRIRHQEELTELHKKRGELAQTVIELNNLIQQKDREI
QNNEARMLECQQQITSLEGDCQELRNSLQELEQANQTLKDEYDALQITFSALEEKLRKTT
EDNQELVSRWMAEKALEANKLNAENEKDTRRRQAKLQKDLADAAKEPLPIEQDDDIDVLP
EEGGKGGDTSPNRPISRTPSRKTLQQPPGGLLDSISNMFGRRRSTNSFSTSPESTETPSG
VCAEVRVPSTALHVFEAHDGEVNTVRFSPGSRLLATGGMDRRVKLWEVVSGRCEAKGALT
GSNAGITSIEFDSAGSYLLAASNDFASRIWTVDDYRLRHTLTGHSGKVLSARFLLDNARI
VSGSYDRTLKLWDLRSKVCMKTVFAGSSCNDIVCTEQCVMSGHFDKKVRFWDIRAESIVR
EMELMGRVTSLDLNHDRSELLTCSRDDLLKIIDLRSNAVRQTFSAQGFKCGADWTRVTFS
PDGSYVAGGSADGALYIWNVLTGKLDRTLDRNHSTAVNCVSWSPSGTYVASVEKGSRAIL
WSDM
NT seq
1815 nt
NT seq
+upstream
nt +downstream
nt
atggcggagcggcgggccgaatgcacctggaagagacacattttggagcaactgaagctc
agagacagagttcagagacacactttcgaggagatcgtccaccagtacaatcgccttttg
gaaaaatctgacctgcagactgtcctcacagaaagataccagacggacaaatatgacgtc
cagagaggtcatgaggccagctccgtggactcatcccgcagcgacaccctgcagcaggag
atggctcagatgaggatccgccatcaggaggagctgacagagctgcacaagaaacgaggg
gagctcgctcagactgtgatagagctcaacaacctgatccagcagaaggaccgagagatc
cagaacaacgaggccaggatgttggagtgtcagcagcagatcaccagcttggagggagac
tgccaggagctgaggaacagcctgcaggaactggagcaggccaatcagacgctgaaggac
gagtacgatgccctgcagatcaccttctccgccctggaggagaaactgaggaagaccaca
gaggacaaccaggagctggtgtcccgttggatggcggagaaagcgctggaggccaacaag
ctcaatgctgagaacgagaaggacaccaggcgcagacaagccaaattgcagaaggatctg
gcagacgctgccaaggagccgctgcccatcgaacaggacgacgacattgatgtgctgcct
gaggaaggaggaaaaggaggggacacgtccccaaacagaccaatcagcagaacgcccagc
aggaagacgctccagcagcctcctgggggtctgctcgactccatctctaacatgtttggc
aggcgtaggtcgactaactctttcagcacgtctccagaaagcacagagacgccgtcggga
gtgtgtgcagaggtccgggtgccgtccacagcgctgcatgtctttgaagcccacgacgga
gaggtgaacaccgtcaggttcagccctggctctcgtctcctagcaacaggagggatggac
cgcagggtgaagctatgggaggtcgtctcaggtcgctgtgaggctaaaggagctctgacc
ggcagcaacgcaggaatcaccagcatcgagtttgacagtgctggctcctacctgctcgct
gcatccaatgactttgccagtcgaatctggaccgtggacgactacagactgaggcacacc
ttaacgggtcacagcgggaaggtgttgtcagctcgcttccttttggacaacgctcgcatc
gtgtctgggagctacgaccgcacgctcaaactgtgggaccttcgcagcaaagtctgcatg
aagacggtcttcgccggctccagctgtaatgacatcgtgtgcacggagcagtgtgtcatg
agtggccactttgacaagaaagtccgattttgggacatcagggcggagagcatcgtgcga
gagatggagctgatgggtcgggtcacgtctctggacctgaaccacgaccgcagcgagctg
ctgacctgttctagagacgacctgctgaagatcatcgacctgcgcagcaacgccgtacgg
cagacgttcagtgctcagggcttcaagtgtggagccgattggaccagagtcaccttcagc
cctgacggcagctatgtggccggagggtcagccgatggcgccctgtacatctggaacgtc
ctgacggggaaactagaccggactctggacagaaaccacagcaccgccgtcaactgcgtg
tcatggtcgccatcggggacgtacgtggccagcgtggagaagggcagcagagccatcctg
tggtcagacatgtga
DBGET
integrated database retrieval system
