Cyprinodon variegatus (sheepshead minnow): 107103540
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Entry
107103540 CDS
T06110
Name
(RefSeq) RNA-binding protein 39-like
KO
K13091
RNA-binding protein 23/39
Organism
cvg
Cyprinodon variegatus (sheepshead minnow)
Brite
KEGG Orthology (KO) [BR:
cvg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cvg03041
]
107103540
Spliceosome [BR:
cvg03041
]
Common components
Common spliceosomal components
General mRNP proteins
107103540
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
RBM39linker
RRM_occluded
RRM_5
RBD_DEAH11
RRM_7
Motif
Other DBs
NCBI-GeneID:
107103540
NCBI-ProteinID:
XP_015258760
LinkDB
All DBs
Position
Unknown
AA seq
505 aa
AA seq
DB search
MMADDLDIEAMLEAPYRKDDSKNQSPDGPEEHSKRKKRSQSRSKDRKRSRSREKKRSRSR
DRKRSRSRDRRRSRSRERRRSRSRERGGRYKDHHKHRRRSRSKSPIRKEKTPPRLPLDNL
TPEERDARTVFCMQLAARIRPRDLEEFFSAVGKVRDVRMISDRNSRRSKGIAYIEFVEAS
SVPLAIGLTGQRLLGVPIIVQASQAEKNRAAAAAAAANNLQKATFGPMRLYVGSLHFNIT
EEMLRGIFEPFGRIEHIQLIMDSETGRSKGYGFITFADAECAKKALEQLNGFELAGRPMK
LGHVSERTDISTASSFLDNDELDRSGVELGTTGRLQLMARLAEGTGMQIPPAAQQALQMS
GAIAIGALAAVSAAMNPTLNMNMNTPALNLPSQPLATHCFQLSNMFNPNSENAPGWELDI
QHDVIEECNKHGGVVHIYVDKNSSEGNVYVKCPSIPSAMAAVNALHGRYFGGKIITAAYV
PLPTYHNLFPESVTATQLLVPPPRR
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgatggcggatgacttggacatcgaggcgatgctggaggctccatacagaaaggatgac
agcaagaaccagagccctgatggaccggaggagcacagcaagaggaagaaacgtagccag
agtcgcagcaaagacaggaagcgcagccgcagtcgggaaaagaaaaggagccggagtcga
gatcgcaaacgcagccgtagccgagacagacgcaggagtcgcagccgggagcgcagacgc
agtcgcagccgagagcggggtgggcgctacaaagaccaccacaagcaccgcagacgatcg
aggagtaagagtccaatcaggaaggagaagacaccacccaggctgcctttagacaatctg
accccagaggagcgggatgctcgcaccgttttctgcatgcagcttgcagccaggatacgc
ccacgggacctggaagagttcttctctgctgttggaaaggtgcgggacgtaaggatgatc
tctgacaggaactctcgcaggtcaaagggcatcgcctacatcgagtttgtggaggccagt
tcagtgcctctggccattggcctgacggggcaaaggctgctgggtgttcccatcatcgta
caggcctcccaggcagagaaaaaccgagctgctgctgctgcagctgcagccaacaacctt
cagaaggcgacgtttggacccatgaggctctacgtcggctctctgcactttaacatcact
gaggagatgttgcgagggatctttgaaccatttgggcggatcgaacacatccagctgata
atggacagtgaaacggggagatctaaaggctacggcttcataacatttgcagacgcagag
tgtgctaagaaagctctggagcagctgaacggctttgagctggcaggacggcccatgaag
ttgggtcacgtgagcgagcggaccgacatatccacggcttcatcattcctggacaacgat
gagctggaccggtcaggagtggagctgggcacaacggggagactgcagctaatggcccgg
ctggctgaaggtacaggaatgcagatccctcctgctgctcagcaggctctacagatgagc
ggagcgattgctattggagctctggctgctgtgtcagctgccatgaatccaaccctcaac
atgaacatgaacactccagccctgaatcttccatctcaaccactcgctactcactgcttc
cagctgtccaacatgttcaaccccaacagtgagaacgctccaggctgggagctcgacatc
cagcatgacgtcatcgaagagtgcaacaaacacggaggggttgtccacatctacgtcgac
aagaactcatctgagggaaacgtttatgtgaagtgtccctccatcccgtctgccatggct
gctgttaacgccctgcatgggaggtactttggaggtaaaataatcacggcggcatatgta
cccctgcccacttaccacaacctgttcccagagtcggtcactgccacccagctgctggtt
ccacctccgagacggtga
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