Cyprinodon variegatus (sheepshead minnow): 107103975
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Entry
107103975 CDS
T06110
Symbol
caprin1
Name
(RefSeq) caprin-1 isoform X1
KO
K18743
caprin-1
Organism
cvg
Cyprinodon variegatus (sheepshead minnow)
Brite
KEGG Orthology (KO) [BR:
cvg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cvg03019
]
107103975 (caprin1)
Messenger RNA biogenesis [BR:
cvg03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Other mRNA localization factors
107103975 (caprin1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Caprin-1_C
Caprin-1_dimer
PEX14-like_2nd
Motif
Other DBs
NCBI-GeneID:
107103975
NCBI-ProteinID:
XP_015259337
Ensembl:
ENSCVAG00000021994
LinkDB
All DBs
Position
Unknown
AA seq
687 aa
AA seq
DB search
MPSAMNANRTVQSASPEMGSAPGSMGGCGQSEVLKQVLCVIDKKVRNMEKKKSKLDDYKV
RKNKGEGLNQDQLEALSKYQEVTNNLEFARELHKTFITLGQDLQKVVKKTARREQLQREE
AEQRRLKTVLELQFVLDRLGDEAVRQDLKQGLGGSPLLTDEDLATFDEFYKLVGPDRDQN
VRLADQYEEASVHLWDLLEGKDKAVVGTTYKALKETLDQVLLSGYFDRIPSHQNGVCEEE
EEEEPAAVAAAAAAPVTESSEAEEQTVDPETEVIEEFTEAITVETTEFINRQFIPDSSYS
GSEKEQGDEWTREPEAVSALQQQQQQPVQPTAPPVALETHPMNLTSPVPPTDPLVRKQVV
QDLMAQMQGTYNFMQDSMLEFDGQPIDPAIVSAQPMKPPQTMDVPQMICSPVHPESRPTQ
PTSVPVQPEPSQVPIVSPTPPPLYQTSHTPDPRPSTEPIDPIQTSMSLSSEQPPPSTALP
PASQTQVFQPVSKPPHSSGINVNAAPFQSMQTVFNLNAPVPPANETEALNQANQYQNSYN
PAFSGQSQHSVEQTEIQAEQLQTVVGAFHTQDQTGGHQQPPQQGPGFGRQSYYNSRGMSR
GGPRNARGLINGYRGSSNGFRGGYDNYRPPFANAPNAGYGQPQFNTSRDYSNGNYQRIKD
GYQQNYKRGAGQGPRGVSRSSTQAMRT
NT seq
2064 nt
NT seq
+upstream
nt +downstream
nt
atgccctcagcaatgaatgcaaacaggacagtgcaatcagccagcccagagatgggatcc
gctccagggtcaatgggcggctgtgggcagtctgaggtattgaagcaagtgttgtgcgtc
atcgacaagaaggtccgcaacatggagaagaagaagagcaaattggacgactataaagtc
aggaagaacaagggggagggtctcaaccaggaccagctggaggctctctccaaataccaa
gaagtcacgaataatttggaatttgcccgagagctgcacaagacatttattacactggga
caagatctccagaaggtagtgaagaagacggctcggcgggagcagctgcagcgagaggag
gcggagcagaggaggctgaagaccgtccttgagttgcagtttgtcctggatcggttgggt
gacgaggccgtacggcaggacctgaagcagggattgggtggctcaccgcttctgacggac
gaagaccttgctacttttgatgagttctataagttggtgggaccagatcgtgatcagaac
gtgaggttggctgatcaatatgaggaagcatctgtgcacctttgggacctgcttgaaggg
aaggacaaggctgtagttggaacaacatacaaggcactgaaagagacattggaccaggtt
ctgctgagtgggtactttgaccggattccatctcaccaaaatggagtgtgcgaggaagaa
gaggaggaagagccagcagctgtagcagcagcagcagcagcaccagtcactgaatcatca
gaggcagaagagcagacggttgacccagaaactgaagtcattgaggaatttacagaggcc
atcacagtggaaaccacagaattcataaacagacagttcattccagacagttcctacagc
ggcagtgaaaaagagcaaggggatgagtggaccagggaacccgaggctgttagtgccttg
caacagcagcaacaacaacccgtacagcctacagctccccctgttgctctggagacccat
cccatgaaccttacgtctcctgttcccccaaccgacccgctggtccgtaagcaagtggtg
caggacttgatggcacagatgcaggggacgtacaacttcatgcaggactccatgttggag
tttgatggacagcccattgatcccgccattgtgtcagcacagccgatgaaacctcctcag
accatggatgtaccccagatgatttgttctcccgttcaccctgaatcccgacctacgcaa
cccacctctgttcctgtacagcctgagccctcacaggtccccatcgtctcaccgacaccc
cctccattgtatcagacctctcatacaccagatcctcgaccctcaacagaacccatcgac
cccatccagacctccatgtcattgtcgtcagaacagcctcccccctccacagctctccct
cctgcctctcagacgcaggtctttcagcctgtttccaaacctcctcacagcagtggcatc
aatgtcaatgcagctccattccagtcaatgcaaacagtgtttaacctcaatgccccggtc
ccgccagctaatgagacggaggccctgaaccaggccaaccagtaccaaaacagctacaat
ccagctttcagcggccagtcgcagcattcggtggagcagacagagattcaggcggagcag
ctacagactgtcgtcggtgccttccacacccaagaccagactggcggccatcagcaaccc
cctcaacagggcccaggctttggcagacagtcctactacaatagcagaggcatgtctcgt
ggtggacccagaaatgccaggggtttgatcaatggctatagaggctcttccaatggattc
agaggtggttatgacaactatcgccctcccttcgccaacgctccgaacgctggatacgga
cagccccagttcaacacgtctcgggactactcaaatgggaattatcagaggatcaaggac
ggttaccaacaaaattacaagcgaggagctggccaaggacccagaggagtctcaaggagc
agcactcaagcaatgcgaacctga
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