Cyprinodon variegatus (sheepshead minnow): 107104086
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Entry
107104086 CDS
T06110
Name
(RefSeq) transient receptor potential cation channel subfamily V member 1-like
KO
K05222
transient receptor potential cation channel subfamily V member 1
Organism
cvg
Cyprinodon variegatus (sheepshead minnow)
Pathway
cvg04080
Neuroactive ligand-receptor interaction
Brite
KEGG Orthology (KO) [BR:
cvg00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04080 Neuroactive ligand-receptor interaction
107104086
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
cvg04040
]
107104086
Ion channels [BR:
cvg04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
107104086
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ank_2
Ank
Ion_trans
Ank_5
Ank_3
Ank_4
Motif
Other DBs
NCBI-GeneID:
107104086
NCBI-ProteinID:
XP_015259489
LinkDB
All DBs
Position
Unknown
AA seq
661 aa
AA seq
DB search
MYIPLPLPTKDALIEVYSTVLIRKLCIFYISDAATGKTALIKALLNLKNGRNDTILELLQ
IAKQTGDLETLINAAFTAPRYKGQTALHVAIERRHLTYVELLVKMGADPQAKANGTFFQW
GEKCGFYFGELPLSLAACTNQPKMVSFLMDNNHRKADPTDKDSQGNTVLHALVVIADDTT
ENVEMVANMYDQILLQYYKSNKVNLESFENNEGLTPLKLAAKLGKIGLLRHMLSREVMDK
ETRVLSRKFTRWIYGPVGSSLYDISSIDTDQNKSVLEMIIFESDNPNRPEMLQIEPLKSL
LQHKWTKFAWKLFLMNFLSYVTYLAIFTSVALSTKDKQPPFTITDYYCQAVIVLAAVRFL
YKSMTHFHRNPPKMRTLFINGFSDILFFLQAVGVLLSTVLSFCGCREYVKILVLSLVVAW
VSILYYAIGIKQLGIYNVMMQRIILGDLLHFLCIYSALLFGFSSAIVAISRDPSGTVKTN
ETLAPESNLKADAGCKMENYEDFRTTMIELFKFTIGMGDLEFTNTFEYIEVFYILLICYI
VLTYILMLNMLIALMGNTVERISEQSETIWSLQRAFAILDMERNLPRFLRSKIYSKGPEM
VLLNDQDVHRKCIMVNEINWTKWRTYLCLKLEEDPGNAKEIEVIQDPEDIQDPEDIQDPD
P
NT seq
1982 nt
NT seq
+upstream
nt +downstream
nt
atgtacattcccttaccccttccaaccaaagatgctctaattgaagtttacagcactgtt
ttgataagaaagctatgcattttttatatttcagatgcagcaacaggaaaaacggctctc
ataaaggccctactgaatctgaaaaatggcagaaatgacactattctggaactacttcag
attgcaaagcagactggtgatttagagactctaatcaatgcagcttttacagctcctcgt
tacaaaggtcaaactgcattacacgttgctattgaacggagacatctgacttatgttgaa
cttttggtcaagatgggtgcggatccgcaagccaaagccaatgggacattcttccagtgg
ggtgaaaaatgtggcttttattttggtgagctgcctctgtccctggctgcctgcaccaat
cagcccaaaatggtttcatttctcatggacaacaatcacaggaaagctgatcctactgac
aaagactcacaagggaacaccgtgttgcacgctctggtggtgatagcagatgacacaaca
gagaacgtagaaatggttgcaaatatgtatgaccaaatccttcttcagtactacaagagc
aacaaagtcaacttggaatcatttgagaacaatgaaggtctgacgccactgaaattggca
gccaaacttggtaaaattgggttgttgaggcacatgttgagtcgggaagtcatggacaaa
gagacaagggtcctttccaggaagtttactcgatggatctatggacctgttgggtcgtca
ctatatgacatcagttccattgacacggatcaaaacaagtctgtgctggagatgatcatc
tttgaaagcgataacccgaatcgccctgagatgctgcagattgaacctctaaagagtctc
cttcaacataagtggacaaaatttgcttggaagctgttcttgatgaacttcttgtcctat
gtcacgtacttggccattttcacctcagtggctttgtccactaaagataaacagccacct
tttaccatcactgattattattgtcaagcagtaatcgtccttgcagctgtgagatttctc
tacaaatcgatgacacattttcataggaaccctccaaaaatgagaactttattcattaat
ggcttcagtgacatcctgtttttcctacaggcagtcggtgtgttgctgtccaccgtcttg
tctttctgtggctgtcgggaatatgtcaaaatccttgttctgtctctggttgtggcctgg
gtgagcatcctctattatgccataggaatcaagcagctgggaatctacaatgtcatgatg
caaaggattatcctaggtgatctgctccatttcttatgcatttacagcgctctgctgttt
ggattttcctctgccattgttgcaattagcagagacccatctgggactgtgaaaacaaat
gagacacttgcaccagaaagcaacttgaaagcagatgcaggatgcaagatggagaattat
gaagatttcagaaccacaatgatagaactgttcaagttcactattggaatgggagatctg
gagttcaccaacacatttgagtacattgaggttttctacatcctgctcatctgctacatt
gttctgacttacatcttaatgctcaacatgctcattgctctaatgggcaacacggtggag
agaatctcggaacaaagcgaaaccatctggagcctgcagagggcatttgccattctggac
atggagaggaacttgccaaggtttctgaggagcaagatctattctaaaggacctgaaatg
gttttgctgaatgaccaggatgtccatcgtaaatgtatcatggtgaatgaaataaactgg
accaaatggaggacttatctttgtctgaagctggaggaagaccctggaaatgccaaggag
atcgaggtgatccaggatcctgaggacatccaggatcctgaggacatccaggatcctgat
cc
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