Cyprinodon variegatus (sheepshead minnow): 107104340
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Entry
107104340 CDS
T06110
Symbol
smg7
Name
(RefSeq) protein SMG7 isoform X1
KO
K14409
protein SMG7
Organism
cvg
Cyprinodon variegatus (sheepshead minnow)
Pathway
cvg03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cvg00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
107104340 (smg7)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cvg03019
]
107104340 (smg7)
Messenger RNA biogenesis [BR:
cvg03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
107104340 (smg7)
mRNA cycle factors
Common to processing body (P body) and stress granule
107104340 (smg7)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
TPR_2
Motif
Other DBs
NCBI-GeneID:
107104340
NCBI-ProteinID:
XP_015259812
Ensembl:
ENSCVAG00000011842
LinkDB
All DBs
Position
Unknown
AA seq
1193 aa
AA seq
DB search
MNPCAQYLRQAEALKADMTDSKLGAAEVWTSRQALQDLYQKMLVTDLEYALDKKVEQDLW
NHAFKNQITTLQSQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRV
RSSQLGIISSKQSGGGGGGIITPQPSSCSYICQHCLVHLGDIARYRNQTSQAESYYRHAA
QLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKALESRDE
VRTKWSVSDFIKAFIKFHGHVYLSKSLDKLDPLREKLEEQFQRLILQKAFSSQQLVHITV
INLFELHHLRDLTADGGEPGCSGEQQLSWFQLLGLFVSFLGVMCSRVLLDKNRGEELMGE
CPLPAIKLSLDWLKLRSSIFQEAAVENRKYIWPWLVSILNSFQPREEDLSSSSSSSVLPL
PEEFELQGFLALRPALRCLDFTRGHQGILLDRDGLPLHARHQRLIALGKWMADNQPGLIR
CRVNEDGLLLFLTDIPEEAIPEPQEKEAPVLQESSNGEQSQNDGGTAGLKSVLSAGKTQS
SWSDSGERPVVTFKENIKPREQSQEPARNLPLKDLGKERRDLCKGNGTAAGTGAAIGKGE
PKRDGKRKSEMKKAGHEKTADVGKQVKAQTELRKTPVSEAKKTPPTQTQTTCSSQFIPIH
HPGAFPPLPSRPGFPPSAYVIPPPVAFPGLQVNPGFTFPAGVSVPAPFLQSAVHGGAGGQ
AGKQSHIPYSQQRPSGPGSAGQGPGPLNQVPSQAQQQQPSPQQALQQSVQLQVQALSQQQ
QSPTKPVQQGGMGKSPPHHPGLQQYIQDQTAPMWNQSQAALQKMSPLQMSMKQQQAFFLG
GQDPLKLYEQQLQPQISNMDKKMKFPDVKIQDFYWEPSYRMERTAEGLAMMGDRMKRPPP
GGMCVEQEVPTGPRGAPFEDKSSPFLPPDLLKTLADFEEDEELIFAKPPDFFQALAGPLS
SAPGPNIFLPNQSRMESSQEAVGQSSSLLPISGFPVQEFNHSSIFSQAYGKNLPPSSKPD
SPMMQQEPSLYSLFQGNPWSPSLPASSDHSTPASQSPHSSNPSSLPSSPPTHSHGAVPFS
NFGPIGTPDSRDRRVVDRWKAEKPGSGFGLDYLPAAASSSGPEPSWHQGGSTGSSWTNQE
SPMDESSSTVLLDSLKSIWSSSMMQPGPSALEQLLLQQKQKQQRGHGAMNPPH
NT seq
3582 nt
NT seq
+upstream
nt +downstream
nt
atgaacccctgcgcccagtatctgcgccaggcggaggccctgaaggctgacatgacagac
tccaagctgggggcagcagaggtgtggacgtcccgccaggcgctgcaggatctctaccag
aagatgctggtgacggacctggagtacgctctggacaagaaggtggagcaggacctgtgg
aaccacgcctttaagaaccagatcaccaccctgcagagccaggccaagaaccgggccaac
cccaaccggagcgaggtccaggccaacctgtcgctgttcctggaggccgccagcggcttc
tacactcagctgctccaggagctctgcaccgtcttcaacgtggacctgccctgccgcgtc
cggtcgtctcagctcggcatcatcagcagcaagcagagcggcggcggcggtggcggcatc
atcacgcctcagcccagctcctgctcctacatctgccagcactgcctggtccacctggga
gacatcgctcgctaccggaaccagaccagccaggcagagtcgtactacagacacgcagcc
cagctggttccatccaacggtcagccctacaaccagctggccatcctggcctcctccaaa
ggagaccacctcaccaccatcttctactactgccgcagcatcgccgtcaagttccccttc
cctgcagcctccaccaacctgcagaaggctttgtccaaggcgctggaaagccgcgatgag
gtccgaaccaagtggagcgtctctgatttcatcaaagccttcatcaagttccacggccac
gtctatctgagcaagagcctggataaactggaccccctgagggagaagctggaggagcag
tttcagaggctgatcctgcagaaagcctttagctcccagcagctggtccacatcaccgtc
atcaacctgttcgagctgcatcacctcagagacctgacggccgacggcggcgagcccggc
tgcagcggcgagcagcagctcagctggttccagctgctcggactcttcgtgtccttcctg
ggagtgatgtgcagccgggttctgctcgacaagaaccgaggggaggagctgatgggggag
tgtcctctgccggccatcaagctgtccttggattggctcaaactgcggagcagcatcttc
caggaagcggccgtggagaacaggaagtacatctggccgtggctggtgtccatcctcaac
agcttccagcccagagaggaagacctctcctcctcctcttcctcctcagtgctgccgctg
ccggaggagtttgagctgcagggtttcctggcgctgcgaccggctctcaggtgtttggac
ttcaccagaggtcaccagggcatccttctggatcgggacgggctgccgctgcacgctcgc
caccagcggctgatcgctctggggaaatggatggccgacaaccagccggggctgatccgg
tgccgagtcaacgaagacgggctcctcctcttcctcaccgacattccagaggaggccatc
ccggagcctcaggagaaggaggccccggtgctgcaggagtcgtccaacggtgagcagagc
cagaacgacggcggcactgcgggcctgaagtcggttctgtctgccgggaagacgcagagc
tcgtggtcggacagcggtgagcggcccgtcgtcaccttcaaggagaacatcaagcccaga
gagcagagccaggagcccgccaggaacctcccactgaaagacctcggcaaggagcgccgc
gacttatgcaagggcaacgggaccgccgccggcaccggcgccgccatcgggaaaggagag
cccaagagggacgggaagaggaagagcgagatgaagaaggccggccatgagaagacggct
gatgtaggcaaacaggtgaaggctcagacggagctgaggaagactccggtctctgaggcc
aagaagactccgcccacccagacccagaccacctgctcgtcccagttcatccccatccat
caccccggagcgttccccccgctgcccagcagacccggtttccccccctcggcctacgtc
atccccccccctgtggcgttcccaggcctgcaggtgaatccaggcttcaccttccccgcc
ggagtctcggtccccgctcctttcctccagtctgcggtccacggcggggcgggcggccag
gctgggaagcagtcccacattccctacagccagcagagaccgtcggggcccggctcggcg
ggccagggcccggggcccctcaaccaggtgccctcccaggctcagcagcagcagccgtcc
ccccagcaggccctgcagcagtcggtgcagctgcaggtccaggccctcagtcagcagcag
cagtcgcccaccaaaccggtgcagcagggggggatgggtaagagcccgccccaccacccg
ggcctgcagcagtacatccaggaccagacggcccccatgtggaaccagtcccaggcggcg
ctgcagaagatgtcccccctgcagatgtccatgaagcagcagcaggcgttcttcctgggg
ggccaggaccccctgaagctgtacgagcagcagctgcagcctcagatctccaacatggac
aagaagatgaagttccctgacgtgaagatccaggacttctactgggagccgtcgtaccgg
atggagcgcacggcggaggggctggccatgatgggggacaggatgaagaggccccctcct
ggtgggatgtgtgtggagcaggaggtccctacggggccccgaggagccccattcgaggac
aagagctcgcctttccttcctcctgacctgttaaaaactctagcagactttgaggaggac
gaggagctgatctttgctaagcctcctgatttcttccaggcgctggccggcccccttagc
tctgctcctggacccaatatctttctgccaaaccagagcaggatggagagcagccaggag
gcggtgggccagtcgtcgtctctgctgcccatcagcggcttcccagtgcaggagtttaac
cacagcagcatcttcagccaggcctacgggaagaacctgccgcccagctccaaacccgac
tctcccatgatgcaacaggagccctccctctactcgctgttccaggggaacccctggtcc
ccctccctccctgccagctcagaccactccaccccagccagccagtccccccactcctcc
aaccccagcagcctgccctcctcccctcccacccacagccacggagccgtgcccttctcc
aactttggccccattggaaccccagacagccgagaccggcgggtcgtggaccgctggaaa
gctgagaaaccaggaagtggctttggtctggactacctcccagctgcagcgtcctcctca
ggccctgagcccagttggcaccagggcggttccacagggagttcctggaccaatcaggag
tctccgatggacgagtcgtcctccactgtgctgcttgacagcctgaagtccatctggtcc
agctccatgatgcagccgggcccgtcggcgctggagcagctccttctgcagcagaagcag
aagcagcagagaggccacggcgccatgaacccgcctcactga
DBGET
integrated database retrieval system
