Cyprinodon variegatus (sheepshead minnow): 107104400
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Entry
107104400 CDS
T06110
Symbol
pms1
Name
(RefSeq) PMS1 protein homolog 1
KO
K10864
DNA mismatch repair protein PMS1
Organism
cvg
Cyprinodon variegatus (sheepshead minnow)
Brite
KEGG Orthology (KO) [BR:
cvg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cvg03400
]
107104400 (pms1)
DNA repair and recombination proteins [BR:
cvg03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
MutL homologs
107104400 (pms1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_mis_repair
HMG_box
HMG_box_2
HMG_WDHD1
Motif
Other DBs
NCBI-GeneID:
107104400
NCBI-ProteinID:
XP_015259880
Ensembl:
ENSCVAG00000010271
LinkDB
All DBs
Position
Unknown
AA seq
814 aa
AA seq
DB search
MAVRHFTSKICSHEDLERLESYGFRGEALGSICAVAEVSVTTKTQEDDISTQYTLDHTGR
VVSQRPSHLGQGTSVSVTKLFKNLPVRRQFYSSTKKCKEELKKVQDLLMAYALIKPELRL
MLVHNKAVLWQKARAADLRSALVATLGSGAVANLLPCHQEQPEMVLDGFLPKPGADLSST
SCSASEKTFIFINRRPVQQKEIMKLLRQHYCAQYAEDAARHRFPILLLSISVSPSSLDVN
LTPDKTQVLLDNKEAVLTALEALLVSLYGFRSSSAEQQLNHEAPPPPSARSEAKEDQNIR
VHEDAPTAEPKHGGGADPQAALQRQASSCSSSSSTADDWIINPPPSELCSVSSLCGDETA
AARPKPEQTGSEPEKPEEERETRKISAQDWSRGTALTDPVTGDPLRPVLVHRPSGPGSPG
PQEARSKKLINSVTEKGATLTAYDMISSRAMRAPPSPASLFEKEARSEVLRERPAASLQE
VSAAVQERWRNLREEDRKTYEEKAKKKHDLHEQRTKLASDGGPQGPTERAKAQSVKRKAP
PSNQQLLDELFSAQPQKKTKTPPPKPSRPLLCSMAALRLGLQRLSSQSSAPPRGLRLVNR
LGSQSCWAVMAGRRLLLFNPYRVEEALLFKRLQENHVLPAAVLQNPLRLTDGNLGGAEFE
TLCSMKKGAAELDGSVFFSDPRLLANGFRVRLPAGLPSAEKHLEVAAMADCVPFLGVEDL
REVLSAVLHRKASRPQDCRPLKVTNYLKAEAVRLARQLPSSLRRGDVEELVGRMERRLGG
TERTCIHGRRFFHHLVDVPSTDEEAEALLRPLEL
NT seq
2445 nt
NT seq
+upstream
nt +downstream
nt
atggccgtccgacatttcacctccaagatctgcagccatgaagacctggagcgtctggag
agctacggcttccggggcgaggcactgggctccatctgcgccgtggctgaggtttccgtc
accacgaagacccaggaggatgacatcagcactcagtacaccctggaccacactgggagg
gtggtctctcagaggccgtcccacctgggtcaaggaacgtcggtgagcgtgacgaagctc
tttaagaacctcccggtcagacggcagttctactcgtccactaagaagtgtaaggaggag
ctgaagaaggtccaggacctgctgatggcctacgccctcataaagcccgagctcaggctg
atgctggtgcataacaaggcggtgctttggcagaaggcccgggcggccgacctgaggagc
gccctggttgctacgctggggtccggcgccgtcgctaacctgctgccatgccaccaggaa
cagccagagatggttctggacggcttcctgcccaaaccgggggccgatctgtcctccacc
agctgctccgcctcagagaagaccttcatcttcatcaaccggcggcccgtccagcagaag
gagatcatgaagctgctccgtcagcattactgcgcccagtacgccgaggacgccgcccgc
caccgcttccccatcctgctgctcagcatctctgtctctccttcatctctggacgtcaac
ctgacgccggataaaacccaggtccttctggataacaaggaggcggttctgacggcgttg
gaggctctgctggtttctctctacgggttccgctccagttcggctgaacagcagctgaac
cacgaggctcctcctcctccgtcggctcgatcggaggcgaaggaggaccagaacatccgg
gttcatgaagacgctccgacagcagaacccaaacatggcggcggcgccgaccctcaggct
gctctgcagcgccaggcctccagctgcagctcctcatcctccacggcggatgattggatc
atcaacccgcctcccagcgagctctgctccgtttcctctctctgtggagatgaaaccgct
gcggctcggcccaaaccagagcagaccggttctgaaccggagaaaccagaggaggagcgt
gaaaccaggaagatttctgcccaggactggagccgggggacggctctgaccgacccggta
acaggagaccccctccgacccgtcctggtccaccggccctctgggcccggttcccccggc
ccgcaggaggccaggagtaaaaaactgatcaattccgtgacggagaaaggagcgacactg
acggcctacgacatgatcagcagccgcgccatgcgggcgccgccgtcccccgcctccctg
ttcgagaaggaggcccggtccgaggttctgagggagcggcccgccgccagcctgcaggag
gtcagcgccgccgttcaggagaggtggagaaacctgagggaagaggacaggaagacgtat
gaggagaaagcaaagaaaaaacacgacctccatgagcagaggaccaagctggcgtcagac
gggggcccccaggggccgactgagagggctaaagcgcagagcgtgaagcgcaaagcgccg
ccgtccaaccagcagctgctggacgagctgttctccgctcagccccagaagaagaccaag
actccgccccccaagccttcgcggcccctcctctgcagcatggcggccctccgcctgggg
ctccagcgcctgtcttctcagagctcggcgccgccgcggggcctccggctggtgaaccgc
ctgggctcccagagctgctgggccgtcatggcggggcggaggctcctgctgttcaacccg
tatcgagtagaagaagctttgctgtttaagaggctccaggagaaccacgtcctcccggcg
gcggtcctgcagaacccgctgcgcctcacagacgggaacctgggaggagcagagtttgag
acgctgtgcagcatgaagaaaggagcagcagagctggatggaagcgtcttcttctccgac
ccgcggctgctcgccaacggcttcagagtcagactcccagcaggcctcccgtcagcggag
aaacatctggaagtggcggccatggccgactgcgtgccttttctcggcgtggaggacctc
agggaggttctgagcgccgttcttcacaggaaggcttccagaccgcaggactgccgtccg
ctcaaagtcacaaactacctaaaagccgaggcggtccggctggcccgtcagctgccttcg
agtttacgccgcggtgacgtggaggagctggtcggacggatggagcggcggctgggcgga
accgaacggacctgcatccacgggcggcggttcttccatcacctggtcgacgttccgtct
acagacgaggaggcggaggctctgctcagacctctggaactctga
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