Cyprinodon variegatus (sheepshead minnow): 107104618
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Entry
107104618 CDS
T06110
Name
(RefSeq) probable ATP-dependent RNA helicase DDX5 isoform X1
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
cvg
Cyprinodon variegatus (sheepshead minnow)
Pathway
cvg03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cvg00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107104618
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cvg03041
]
107104618
03009 Ribosome biogenesis [BR:
cvg03009
]
107104618
Enzymes [BR:
cvg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
107104618
Spliceosome [BR:
cvg03041
]
Complex A
U1 snRNP components
U1 related factors
107104618
Complex B
107104618
Ribosome biogenesis [BR:
cvg03009
]
Eukaryotic type
Pre-60S particles
Helicases
107104618
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_C_2
ERCC3_RAD25_C
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
107104618
NCBI-ProteinID:
XP_015260142
Ensembl:
ENSCVAG00000018093
LinkDB
All DBs
Position
Unknown
AA seq
623 aa
AA seq
DB search
MPGYSDRDRGRDRDRGYGGGPPRFGGSRSGGGGGGKFGNPGERLRKKHWNLDELPKFEKN
FYQQHPDVARRTLQEAEQYRRSKTITVKGRDCPNPITQFHEASFPSYVMEVINKQNWTEP
TPIQAQGWPLALSGMDMVGIAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTR
ELAQQVQQVAAEYGRASRLKSTCIYGGAPKGPQLRDLERGVEICIATPGRLIDFLEAGKT
NLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKEY
VQINIGALQLSANHNILQIVDVCNDGEKENKLIRLLEEIMSEKENKTIIFVETKRRCDDL
TRRMRRDGWPAMGIHGDKSQQERDWVLNEFKFGKAPILIATDVASRGLDVEDVKFVINFD
YPNNSEDYIHRIGRTARSQKTGTAYTFFTPNNMRQAADLVSVLREANQAINPKLLQMAEE
RGGRSRGGRGGDYRDDRRDRYSSGRRDFGGGRDRGYNNGPNKSYGTGSQNGGYGSNNGTS
NGYGGGNYNNNGQSNFSNNQTQTFVAQNNFQAQQFAPSNPVAQNGTSHPQFSFPQAQAPP
QVAPPQHPPPPLVPYPMPPQFPQ
NT seq
1872 nt
NT seq
+upstream
nt +downstream
nt
atgcctggatattcagacagagatcgcggcagagatagagacagaggctatggcggtggg
cctccccggttcggtgggagccggagtggtggcggtggaggaggaaagttcgggaatcca
ggggagcgattaaggaagaaacactggaacctggatgagcttccaaagtttgagaaaaac
ttttatcagcagcatcctgacgtcgcccgtagaacactgcaagaagcggagcaatacaga
aggtccaaaacgataacggtgaaagggagggactgccccaaccctataactcagttccat
gaggctagctttccctcttatgtgatggaggtcatcaacaaacagaactggactgaacca
acgcctatccaggctcagggatggcctttggctctcagtggcatggacatggtcggcatt
gctcagactggctctggaaagacactttcttatcttctgcctgcgattgtccacatcaat
catcagcctttcttggaacgtggggatggtccaatttgcttggtgttggcccccactcgt
gagctggcacagcaagtacagcaggtggcggctgaatacggcagagcttctcgtctgaaa
tccacctgcatctacggaggtgctccgaaagggcctcagctccgcgatttggagaggggt
gtagaaatttgcattgccactccagggaggctcattgacttccttgaggcaggaaagacg
aaccttcgccgatgcacttacttggtgctggatgaggcagacagaatgctggatatggga
tttgagcctcagatcaggaaaattgttgaccaaatcaggcccgacagacagactctcatg
tggagtgccacttggcctaaagaggttcgccagctggcagaagacttcctgaaggaatat
gttcaaatcaacatcggtgcactacagcttagtgctaatcataacatccttcagattgtg
gatgtttgcaatgatggagagaaagaaaacaagctgatccgtctgctcgaggagatcatg
agtgagaaggagaacaagacaatcatctttgtggagacaaagaggcggtgtgatgacctc
actcgtcgaatgagaagagatgggtggccagctatgggtatccatggtgacaaaagccag
caggaaagagactgggttcttaatgagttcaaatttggcaaagctcccatactcatcgcc
acagacgtcgcatccagaggcctagatgtggaagacgtgaaatttgtcatcaactttgac
taccctaacaactctgaggactatatccaccgcattggcagaacagctcgcagccaaaag
accggcacggcttataccttcttcactcctaacaacatgcggcaggcggcggacctcgtc
tccgtgctccgggaggccaaccaggccatcaacccaaagctcctccaaatggcagaagaa
agaggaggtcgttcaaggggcggcagaggtggtgactacagagacgaccgtcgggatagg
tattcctctggaaggcgtgattttggtggtggtagagatagaggttataacaatggacca
aataagagttacggcacaggttctcagaatggaggctatggcagcaataacggcaccagc
aatggttacggtgggggcaactacaataacaatggacagtcaaacttcagcaacaaccaa
actcaaacatttgtcgcccaaaacaacttccaggcccaacagtttgcccccagcaaccct
gtggctcagaacgggacgagccatcctcagttctcgttcccccaggcccaggctccccca
caggttgcccctccacagcatccccctccccctctggtgccgtaccccatgcctccacag
ttccctcagtag
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integrated database retrieval system
