Cyprinodon variegatus (sheepshead minnow): 107104789
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Entry
107104789 CDS
T06110
Symbol
ddx56
Name
(RefSeq) probable ATP-dependent RNA helicase DDX56
KO
K14810
ATP-dependent RNA helicase DDX56/DBP9 [EC:
5.6.2.7
]
Organism
cvg
Cyprinodon variegatus (sheepshead minnow)
Brite
KEGG Orthology (KO) [BR:
cvg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
cvg03009
]
107104789 (ddx56)
Enzymes [BR:
cvg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
107104789 (ddx56)
Ribosome biogenesis [BR:
cvg03009
]
Eukaryotic type
Pre-60S particles
Helicases
107104789 (ddx56)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_RecD
Motif
Other DBs
NCBI-GeneID:
107104789
NCBI-ProteinID:
XP_015260363
Ensembl:
ENSCVAG00000006499
UniProt:
A0A3Q2CJ07
LinkDB
All DBs
Position
Unknown
AA seq
558 aa
AA seq
DB search
MAAERLQFHEMGLDDRLLKAVADLGWSQPTLIQEKAIPLALEGKDLLARARTGSGKTAAY
AIPIIQRILASKQSVRVQDVRALILVPTKELGQQVQSMIRQLTSCCSRDVRVADISGKAD
VSTQRPILMEKPDVVVGTPSRVLAHLKAQNLVLHSSLEMLVVDEADLVFSFGFESDLKNL
LCHLPKIYQSFLMSATFNEDVQALKELLLHNPVTLKLQGSQLPDSSQLQQYTIKCEEEDK
FLLIYTLLKLQLVQGKTLLFVGAVDRSYRLKLFLEQFAIPACVLNSELPVQSRCHLISQF
NQGFYDIIIASDEQTLVQPAVSSSGKEKKQKSSEKGAKAKDKEYGVSRGVDFQNVANVIN
FDFPTSVDSYIHRVGRTARADNPGTALSFVAHTELSALEEVEESLCGDKAESALKPYEFR
MEEIEGFRYRCRDAMRAVTKQAVREARLKEIKQELLNSEKLKTYFEDNPRDLQLLRHDKD
LHPAVIKPHMKNIPDYLIPETLRGVVNPLSSRRRKRRIKPAAEGVVKSSFKKNVPGRNPL
KSFRFTGSRNKKAKGAKS
NT seq
1677 nt
NT seq
+upstream
nt +downstream
nt
atggccgcggagaggcttcagtttcatgaaatgggattagacgaccgccttttaaaggcg
gtggccgatctgggttggtctcagcccacccttatccaggagaaggccattcctctggct
ctggaagggaaggaccttctggctcgagcacggaccggatctgggaagacggcggcgtac
gctatacccatcatacagcgcatcctggcatccaaacagagtgtccgtgtgcaggatgtt
cgagctctcatcctggtaccaaccaaagagctcggccagcaggttcagagcatgataaga
cagctgacgtcgtgctgttcaagagacgtccgtgtggccgacatctccggcaaagccgac
gtatcgacgcagagacccattctgatggagaagccagacgtggttgtggggacgccgtcc
cgcgttctcgcccacctcaaagcccagaacctggtcctccactcctccctggagatgctg
gtggtagacgaggccgacctcgtcttctccttcggcttcgagtcggatctgaagaacttg
ttgtgccatttgccaaagatctatcagtcgttcctcatgtcggccaccttcaacgaggac
gtccaggccttaaaggagctgctgcttcataacccggtgaccctgaagctccagggctct
cagctcccagacagcagccagctgcagcagtacaccatcaaatgtgaggaggaggacaag
tttctactgatttacacgctgctgaagctgcagctggttcaggggaaaacgctgctgttt
gtcggagccgtggaccggagctacaggctcaaactgttcctggaacagttcgccatcccc
gcctgcgtcctgaactccgagctgccggtccagtccaggtgccacctcatcagccagttt
aaccagggcttctatgacatcatcatcgcttcggatgagcagacgttggttcaacctgct
gtgtcgtcttcagggaaagaaaagaagcaaaagagctcagagaaaggagccaaggccaaa
gataaggagtacggcgtctccaggggggtggacttccaaaacgtggccaacgtcatcaac
tttgatttccccacatcggtggattcctacattcatcgagtcggaagaacggcgagagct
gacaacccgggcaccgccctgtccttcgtggctcacacagagctcagcgctctggaggag
gtggaggagtccctctgtggagataaagctgagtctgcgctcaaaccctacgagttcagg
atggaggagattgaaggcttcaggtacaggtgcagggatgcaatgcgagcggtgaccaag
caggctgtgagggaggccagactgaaggagatcaaacaggagctgctcaactccgagaaa
ctcaagacgtactttgaggacaaccccagagatctgcagctgctgagacacgacaaagac
cttcatcctgctgtcatcaagcctcacatgaaaaacatcccagactatctgattccagag
acgctgagaggcgtggtgaacccgctgtccagcaggagaagaaagaggaggataaaacca
gcagcagagggggtcgtgaaaagcagcttcaagaaaaacgtcccaggaaggaatccgctg
aagagtttccgattcacaggatcaagaaataagaaagccaaaggtgctaaatcgtag
DBGET
integrated database retrieval system
