Cyprinodon variegatus (sheepshead minnow): 107105018
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Entry
107105018 CDS
T06110
Name
(RefSeq) probable ribonuclease ZC3H12C
KO
K18668
ribonuclease ZC3H12 [EC:3.1.-.-]
Organism
cvg
Cyprinodon variegatus (sheepshead minnow)
Brite
KEGG Orthology (KO) [BR:
cvg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cvg03019
]
107105018
Messenger RNA biogenesis [BR:
cvg03019
]
Eukaryotic type
mRNA degradation factors
Other degradation factors
RNases
107105018
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_Zc3h12a
Regnase_1_C
UBA_6
zf-CCCH_4
UBA_N4BP1_C
CpXC
UBA_N4BP1
zf-CCCH_2
Motif
Other DBs
NCBI-GeneID:
107105018
NCBI-ProteinID:
XP_015260618
Ensembl:
ENSCVAG00000002328
UniProt:
A0A3Q2DMQ5
LinkDB
All DBs
Position
Unknown
AA seq
934 aa
AA seq
DB search
MGQKDHVEAGTGHILDLGPDLEYLHVAGADRQAGGVDEPPAMDEQGESFTKKATLGSPPA
TTPEESGERDGEGRPTPVEDADGGEVTHTFSKNSHQPLCRTPCVDLGTEGPPESPSDLSG
EPEHESPEPPADPTASEPEPEPEPTPGGKDYQTKLEFALKLGYSEVTVRQVLSKLGPDTL
INDILGELVKLGTKSDGEQPAAALTSTSSSSSSSSCGCSDVPERSDSPLPSESLCDQDNL
RPIVVDGSNVAMSHGNKEVFSCQGIQLAVYWFLERGHQDITVFVPAWRKEQSRPDAPITD
QEILRRLEKEKILVFTPSRRVQGRRVVCYDDRFIVKLAYESDGIIVSNDNYRDLANEKPE
WKKFIDERLLMYSFVNDKFMPPDDPLGRHGPSLDNFLRKRPIMPEQKKQPCPYGKKCTYG
HKCKYYHPERGAQPQRAVADELRASAKGCVPSKNQGDAGLVKSHSVPAGTIEAKNGALKR
QSDPSIRALSYSDAEEKLLAKSRLESQKSNVGGSSSSSSSSVSCGGGLTMGGPPSAFSLL
QDQQSRSGGHLPAPAHDLYPHCESPDLSYYSVTRAYSGLSLSSRRSPDCRYPNDQDLRHG
SMGSAGSECGSESSVSCGSSDSYSDRSCPGCSADTLIEENLIFHNPPSHLYAHHVPPSNH
ELCSLHAADYPNIQHNHSSNPVHSYHLGSACGQSCVHEPPPSEVPPKRPLYPLPPHLQHQ
PLAARSSCPGDYQSLPQSNRQPPGSPVGRCLAPTRTESVSDSRLYEHLSASHHHHRPKAL
PSWETYYRQPSLPPPRYEPSAYQSLPDTHQTSWHPPGWPQEGYSQHHSSHPALHPSPTRY
RSHPPPSALSPHPPYPPHSSHLVFPPHPPPPYRSQHPESPVHGRYEDAREKVYINLCNIF
PSELVSRVMARSPHVTDPQQLAAAILAEKAQSGY
NT seq
2805 nt
NT seq
+upstream
nt +downstream
nt
atgggccagaaggaccatgtggaggcgggaacgggccacatcctggatctggggccggac
ctggagtatctccacgtagccggggccgaccggcaggctggcggcgtcgacgaaccccct
gctatggatgagcagggggagagcttcaccaaaaaggctacgcttggttctcctccggcg
acaacgccagaggagagcggcgagcgtgatggagaggggaggccgacgcctgtggaagat
gcagacggaggggaggtcacgcacaccttcagcaaaaacagccaccagccgctgtgccgc
acgccgtgtgtggatttggggacagaaggacctccggagtctccgtctgatctctcagga
gaacccgagcatgaatcgcccgaacccccagccgaccccacggcatcagaaccagaacca
gaaccagagcccacgccgggagggaaggactaccagaccaagctggagtttgccttaaaa
ctgggctactctgaggtgaccgtgcgtcaggtgctgtccaagctggggcccgacaccctc
atcaacgacatactgggcgaactggtcaaactgggcaccaagtcggacggcgagcagcca
gcggcagccttgacctctacctcatcatcttcatcatcgtcgtcttgcggctgctccgat
gtgccggagaggtcggactcgccgttaccctcagaatctctctgcgaccaggacaacctg
cggccgatcgtggtggacggcagcaacgtggccatgagccacgggaacaaagaggtgttt
tcctgccagggcatccagctggctgtatactggttcctggagcgtggccatcaggacatc
accgtttttgtacctgcttggaggaaagagcagtcccgccccgacgctccgataacagac
caggagatcctgcggcggctggagaaggaaaagatcctggttttcaccccctcgcggcgc
gttcaaggtcggcgcgtggtctgttatgacgatcgcttcattgtcaagctggcttatgag
tcagacggcatcatcgtctccaatgacaactacagagacctggccaatgaaaagccagag
tggaagaaattcatagatgagcgactgctcatgtattccttcgtcaatgacaaattcatg
cctccagatgatcctcttggacgtcacggccccagcttagacaacttcctgaggaaaagg
cccatcatgcctgagcagaagaaacaaccctgtccatatggaaagaagtgcacatatggc
cacaagtgtaagtactaccatcccgagagaggagctcagcctcagcgcgccgtggccgac
gagctgcgggccagcgccaagggctgcgtcccctccaagaaccagggggatgctggattg
gtgaagagccacagcgtgccagctggcaccatcgaggcaaagaacggcgccctaaaaagg
cagtcggatcccagcatccgagctctgtcgtacagcgacgctgaggagaagctattggcc
aaaagtaggttggaaagtcagaagagcaacgtaggagggagcagcagcagctccagtagt
agcgttagctgcggcgggggtttaactatgggagggcccccgtctgcttttagccttctg
caggaccagcagtccagatcaggtgggcatcttcctgcccccgcccatgatctctacccg
cactgcgagtctccagacttaagctactactcagtaacacgggcctactctggcctgagc
ctctcctcccggcgaagcccggactgccgctaccccaacgatcaggacctacggcacggc
tccatgggctcagctggctccgaatgcgggagtgaaagcagcgtcagttgtggcagcagt
gactcctatagcgacagatcctgtcccggatgctccgccgatactttaatagaagaaaac
cttattttccataacccccccagtcacctctacgcccatcatgtgcccccctctaaccat
gagctgtgcagccttcatgctgcggattacccaaacatccaacacaaccactcctctaat
ccagttcattcctaccacctgggctctgcttgtggacagagctgcgttcatgagccgccg
ccatcagaggtaccccctaagcggcccctctacccgctgccccctcacctccaacaccag
cccctagctgctcgctccagctgccccggcgactaccagtctctgcctcagtccaaccgt
cagccccccggctcccccgtcggccgctgcctggcgcccacgcgaaccgaaagcgtatct
gactcccgcctgtacgaacatctctctgcgtctcaccatcaccatcgaccgaaagctctg
cccagctgggagacttactacagacaaccgtcgctgccgccgccgaggtacgagccgtcg
gcctatcagagtctccccgatacgcatcagacatcttggcacccacctggatggccccaa
gagggctacagccagcatcactcgtctcacccagctctgcacccgtcccccacacgctac
cgaagccaccccccaccatcggccctctctccgcacccgccttacccccctcacagctcc
catcttgtatttcccccacaccctccacctccatacaggtcacagcaccccgagtctcca
gtgcacggccgctatgaagacgccagggagaaggtgtacataaacctttgcaacatcttc
ccctcagaactggtaagccgggtaatggccaggagcccccacgtcacggacccccagcag
ctggctgccgccatcttggcagagaaagctcagagcggctactga
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