Cyprinodon variegatus (sheepshead minnow): 107105048
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Entry
107105048 CDS
T06110
Symbol
cpsf2
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 2
KO
K14402
cleavage and polyadenylation specificity factor subunit 2
Organism
cvg
Cyprinodon variegatus (sheepshead minnow)
Pathway
cvg03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cvg00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
107105048 (cpsf2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cvg03019
]
107105048 (cpsf2)
Messenger RNA biogenesis [BR:
cvg03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
107105048 (cpsf2)
U7-dependent histone pre-mRNA processing factors
107105048 (cpsf2)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Lactamase_B_6
CPSF100_C
Beta-Casp
RMMBL
Lactamase_B
Anti-Pycsar_Apyc1
Lactamase_B_2
Motif
Other DBs
NCBI-GeneID:
107105048
NCBI-ProteinID:
XP_015260655
Ensembl:
ENSCVAG00000000095
UniProt:
A0A3Q2CB75
LinkDB
All DBs
Position
Unknown
AA seq
787 aa
AA seq
DB search
MTSIIKLTAVSGVQEESALCYLLQVDEFRFLLDCGWDENFSMDIIDAMKRYVHQVDAVLL
SHPDPIHLGALPYAVGKLGLNCTIYATIPVYKMGQMFMYDLYQSRNNSEDFTLFTLDDVD
SAFDKIQQLKYSQIVNLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIVYAVDFNHKR
EIHLNGCTLESISRPSLLITDSFNAAYVQPRRKQRDEQLLTNVMETLRGNGNVLIAVDTA
GRVLELAQLLDQIWRTKDAGLGVYPLALLNNVSYNVVEFSKSQVEWMSDKLMRCFEDKRN
NPFQFRHLNLCHSLADLARVPSPKVVLCSQPDLESGFSRELFTMWCQNAKNSIILTYRTT
PGTLARYLIDNPGEKMLDLEVRKRVKLEGKELDDYLEKEKIKKEAAKKLEQAKEVDVDSS
DESDLEDDLDQPAVVKTKNHDLMMKGEGSRKGSFFKQAKKSYPMFPVHEERIKWDEYGEI
IRVEDFLVPELQATEEEKSKLESGLTNGDEPMDQDLSVVPTKCVSSVETFEIRAKVTYID
YEGRSDGDSIKKIINQMKPRQLVIVHGPPEASLDLAESCKAFSKDIKVYTPKLQETVDAT
SETHIYQVRLKDSLVSSLQFCKAKDTELAWIDGVLDMRVAKVDTGVMLEEGVKEEEEDSE
VPMDTAPELGIDHNATAVAAQRAMKNLFGEDEKEISEESDVIPTLEPLPPTEISGHQSVF
INEPRLSDFKQVLLREGIQAEFVGGVLVCNNVVAVRRTEPGRIGLEGCLCDDYYKIRELL
YQQYAVV
NT seq
2364 nt
NT seq
+upstream
nt +downstream
nt
atgacatctatcattaaactgaccgccgtatcgggggtccaggaggaatcggccctctgt
tatctgctgcaggtggatgaatttcgcttcctactggactgtggatgggacgagaatttc
tcaatggacattatagatgccatgaagcgatatgttcaccaagtcgatgcagtcctgctc
tcgcaccctgatcccattcaccttggagcccttccctacgctgtgggcaagcttggtctg
aactgcaccatctatgccaccattccagtctacaaaatgggtcagatgttcatgtatgat
ttatatcagtcaagaaacaacagtgaagacttcacactttttacccttgatgatgtggat
agtgcttttgataaaatccagcagttgaaatactcacagattgttaatctgaaaggaaag
gggcatggtctttcaattacccctctcccagctggacacatgattggaggtactatttgg
aaaatcgtcaaggacggggaggaggaaatcgtatacgctgtggacttcaatcacaagaga
gaaatccaccttaacggctgcacactggagagcattagtcgtccatctttacttattaca
gattcctttaatgctgcttatgtacagccacgccgcaaacaaagagacgagcaactgctt
accaacgtgatggagaccctgcgtggtaatggtaatgtccttattgctgtggatacggct
ggtcgcgtgttggagctggcgcagctcttagatcagatttggaggacaaaggatgctgga
ctgggagtttacccgctggctctgctcaacaatgtcagctacaacgtggtggagttctcc
aaatcccaggtggagtggatgagtgacaaactcatgaggtgttttgaggacaaaaggaac
aatcccttccagttccgacacttgaacctttgccacagcctggcagacctggcccgggta
cccagccctaaggtggtgctttgcagccaaccggacctcgagtcggggttctccagggag
ctcttcactatgtggtgccaaaatgccaaaaattccatcatcctcacctaccgcaccacc
cctggaaccctggcccgctatctcatcgacaatcctggagaaaagatgctggatttggag
gtcagaaaaagagtcaaactggaagggaaagagctggacgactatctggaaaaagaaaaa
attaagaaagaagcagcaaaaaaactggagcaagcaaaagaggtggatgtggactcgagt
gatgagagtgacctggaagatgatctggatcagccagctgtggtgaaaaccaaaaatcac
gacctgatgatgaagggcgaggggagccgcaaaggaagcttcttcaaacaggccaaaaag
tcctatcctatgttcccggtgcatgaggagcgaatcaagtgggacgaatatggagaaatc
attagggttgaagactttttggttcctgaactgcaagccacagaagaggagaagagcaag
ctggaatcagggctgacaaatggagacgaacccatggaccaggatctgtctgttgttccc
acaaaatgtgtctcaagtgttgagacctttgaaataagagcaaaagtgacgtacatagac
tacgaaggtcgctctgatggcgattccattaagaagattattaaccagatgaaacccaga
cagcttgtgatcgttcatgggccgcctgaagcaagtctggacctggctgagtcctgcaag
gctttcagcaaagatatcaaagtttacacacccaaactgcaggaaactgtggacgccacc
agcgagactcacatctaccaggtgcgcctgaaagactcgctggtgagctcgctgcagttc
tgcaaggccaaagacacggagctggcctggatcgatggggtgctggacatgcgcgtcgcg
aaggtggataccggcgtgatgctggaggagggtgtgaaagaggaggaggaagacagcgag
gtgccaatggataccgcccccgagcttggcatcgaccataacgccacggctgtggcagct
cagcgcgccatgaaaaacctgtttggagaggatgagaaggagatctcggaggagagcgat
gtcattcccacactggagccgctgccgccgactgagatttcagggcatcagtcggtgttc
atcaacgagcccaggttgtctgacttcaagcaggttttgctgagagaaggcatccaggct
gagtttgtgggaggagttctggtatgcaacaatgtggtggccgttcgcaggacggagcct
gggcgcatcggtctagaaggctgcctgtgtgatgactactataagatccgggagctgctt
tatcagcagtacgctgttgtatag
DBGET
integrated database retrieval system
