Chromobacterium violaceum: CV_1003
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Entry
CV_1003 CDS
T00147
Symbol
rhlE4
Name
(GenBank) ATP-dependent RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
cvi
Chromobacterium violaceum
Pathway
cvi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cvi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CV_1003 (rhlE4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cvi03019
]
CV_1003 (rhlE4)
Enzymes [BR:
cvi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CV_1003 (rhlE4)
Messenger RNA biogenesis [BR:
cvi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CV_1003 (rhlE4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AAQ58677
LNCC_Brazil:
CV1003
UniProt:
Q7NZB9
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All DBs
Position
1042241..1043566
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AA seq
441 aa
AA seq
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MLFSELGLSPEILRAIDEQGYSQPTPIQEKAIPLVLSGRDLLAAAQTGTGKTAAFMLPIL
ERLKKFANTSVSPAMHPIRALVLSPTRELADQIGVNVQTYTKYLPLRATTVFGGVNMDPQ
TQELRRGVEILIATPGRLLDHIQQKTVQLNKVEVLVLDEGDRMLDMGFIQDIRKIMGMLP
KERQTLLFSATFAPEIKRLAADFMHAPQTVEVARQNATNDQVEQLVFQVDNFKKRQLLAH
LIRSREMSQVIVFCKTKISADQLARDLKRDGLDAEAIHGDKTQGARLETLAGFKEGKLRV
LVATDVAARGLDISELPYVVNFELPTSPEDYVHRIGRTGRAGAKGIAISLMCPDESRQHE
AIEKLTKQTLTPQSVDGFWPSWLPRPKPAREPSSASPSMPALSAGKSEGLKQARPGRRSR
KAKREIPALLLPPRYKVEIIR
NT seq
1326 nt
NT seq
+upstream
nt +downstream
nt
atgttgttttccgaactcggcttgtcgccggaaatcctgcgcgccatcgacgagcagggc
tatagccagccgacgccgatccaggagaaggcgattccgctggtgttgtccggtcgcgac
ctgctggccgccgcccagaccggcaccggcaagaccgccgccttcatgctgccgatactg
gagcggctgaagaagttcgccaataccagcgtgtcgccggcgatgcatccgatccgcgcg
ctggtgctgtcgccgacccgcgagctggccgaccagatcggcgtcaacgtgcagacttac
accaagtacctgccgctgcgcgccaccaccgtcttcggcggcgtcaacatggacccgcag
acccaggagttgcgccgcggcgtggaaatcctgatcgcgacgccgggccgcctgctggac
cacatccagcagaaaacggtgcagctgaacaaggtggaagtgctggtgctggacgaaggc
gaccgcatgctggacatgggcttcatccaggatatccgcaagatcatgggcatgctgccc
aaggagcgccagacgctgctgttctcggccaccttcgcgccggagatcaagcgcctggcg
gccgacttcatgcatgcgccgcagaccgtcgaggtcgcccgccagaacgccaccaacgac
caggtcgagcaactggtgttccaggtggacaacttcaagaagcgccagctgctggcccat
ttgatccgctcgcgcgagatgagccaggtgatcgtgttctgcaagaccaagatcagcgcc
gaccagctggcgcgcgatttgaagcgcgatggcctggacgccgaggccatccacggcgac
aagacccagggcgcgcggctggagacgctggctggcttcaaggaaggcaagctgcgcgtg
ctggtggccaccgacgtcgccgcgcgcggcctggacatttccgagctgccttatgtggtg
aacttcgagctgcccacctctccggaagactatgtgcaccgcatcggccgaaccggccgc
gccggcgccaagggcatcgcgatctcgctgatgtgcccggacgagtccaggcagcacgag
gcgatcgaaaagctgaccaagcagacgctgacgccgcagagcgtcgacggtttctggccg
tcctggctgccgcgtcccaagccggcgcgcgagccctcgtccgcgtcgccgtccatgccg
gccctgtcggccggcaagagcgaaggactgaaacaggcccgccctggccgccgcagccgc
aaggccaagcgcgaaattccggcgctgctgctgccgccgcgctacaaggtggaaatcatc
cgctga
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